Wall clock time and date at job start Fri Apr 10 2020 18:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47301 * 2 1 4 4 O 1.42901 * 109.47312 * 119.99812 * 2 1 3 5 5 C 1.53000 * 109.47196 * 239.99784 * 2 1 3 6 6 H 1.09001 * 109.47278 * 305.67954 * 5 2 1 7 7 N 1.46503 * 109.46953 * 65.67886 * 5 2 1 8 8 C 1.34770 * 120.00192 * 275.00159 * 7 5 2 9 9 O 1.21286 * 120.00142 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00382 * 180.02562 * 8 7 5 11 11 C 1.55237 * 110.46506 * 294.80711 * 10 8 7 12 12 C 1.54887 * 102.58796 * 203.39412 * 11 10 8 13 13 C 1.54262 * 104.31401 * 37.93009 * 12 11 10 14 14 C 1.53877 * 106.59879 * 336.32769 * 13 12 11 15 15 C 1.50699 * 109.47039 * 185.67849 * 5 2 1 16 16 O 1.21284 * 120.00264 * 277.37524 * 15 5 2 17 17 N 1.34774 * 119.99868 * 97.37826 * 15 5 2 18 18 C 1.46495 * 120.00209 * 353.63869 * 17 15 5 19 19 C 1.46505 * 119.99953 * 173.64053 * 17 15 5 20 20 C 1.50707 * 109.46961 * 89.99652 * 19 17 15 21 21 H 1.07999 * 119.99964 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99744 * 179.97438 * 20 19 17 23 23 N 1.31508 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99812 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47212 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46967 * 120.00553 * 24 22 20 27 27 H 1.48502 * 109.47333 * 240.00631 * 24 22 20 28 28 H 1.08991 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47039 * 300.00267 * 1 2 3 30 30 H 1.09002 * 109.46920 * 59.99948 * 1 2 3 31 31 H 0.96697 * 114.00570 * 186.43912 * 4 2 1 32 32 H 0.97002 * 119.99571 * 95.00123 * 7 5 2 33 33 H 1.09002 * 110.43418 * 57.45349 * 10 8 7 34 34 H 1.09004 * 110.90122 * 85.09872 * 11 10 8 35 35 H 1.09004 * 110.76480 * 321.62455 * 11 10 8 36 36 H 1.09002 * 110.48574 * 279.18404 * 12 11 10 37 37 H 1.09004 * 110.49072 * 156.67689 * 12 11 10 38 38 H 1.09005 * 110.03185 * 95.60912 * 13 12 11 39 39 H 1.09000 * 110.03629 * 216.99311 * 13 12 11 40 40 H 1.08994 * 110.03638 * 119.28395 * 14 13 12 41 41 H 1.09000 * 110.02784 * 240.66959 * 14 13 12 42 42 H 1.09002 * 109.47063 * 84.71052 * 18 17 15 43 43 H 1.09003 * 109.47448 * 204.70930 * 18 17 15 44 44 H 1.09002 * 109.46988 * 324.70846 * 18 17 15 45 45 H 1.09005 * 109.47200 * 209.99663 * 19 17 15 46 46 H 1.08995 * 109.47486 * 330.00094 * 19 17 15 47 47 H 0.97004 * 120.00163 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 1 1.5960 -1.7154 -1.3015 7 7 1.6664 0.0437 -2.4415 8 6 0.4505 -0.1260 -2.9975 9 8 -0.3343 -0.9125 -2.5111 10 6 0.0664 0.6604 -4.2243 11 6 -0.0105 2.1756 -3.8956 12 6 -0.9588 2.7121 -4.9964 13 6 -2.0158 1.6011 -5.1639 14 6 -1.3639 0.2966 -4.6729 15 6 3.5404 -0.8442 -1.1809 16 8 4.2412 0.0847 -1.5230 17 7 4.1035 -1.9864 -0.7396 18 6 3.2624 -3.0555 -0.1961 19 6 5.5570 -2.1587 -0.8035 20 6 6.1792 -1.6550 0.4733 21 1 5.5544 -1.2476 1.2544 22 6 7.5460 -1.7152 0.6446 23 7 8.3066 -2.2117 -0.3063 24 14 8.3172 -1.0914 2.2276 25 1 7.2526 -0.5862 3.1313 26 1 9.0461 -2.2005 2.8936 27 1 9.2657 0.0080 1.9164 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.9650 -0.6269 1.2841 32 1 2.2943 0.6724 -2.8307 33 1 0.7771 0.4789 -5.0306 34 1 0.9724 2.6406 -3.9721 35 1 -0.4384 2.3351 -2.9058 36 1 -0.4142 2.8642 -5.9282 37 1 -1.4296 3.6412 -4.6749 38 1 -2.8954 1.8287 -4.5617 39 1 -2.2961 1.5074 -6.2131 40 1 -1.9271 -0.1090 -3.8325 41 1 -1.3279 -0.4309 -5.4838 42 1 2.8874 -3.6732 -1.0122 43 1 3.8511 -3.6707 0.4843 44 1 2.4227 -2.6180 0.3440 45 1 5.7924 -3.2155 -0.9302 46 1 5.9531 -1.5946 -1.6479 47 1 9.2683 -2.2537 -0.1859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412480291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:14 Heat of formation + Delta-G solvation = -157.760969 kcal Electronic energy + Delta-G solvation = -27618.468380 eV Core-core repulsion = 23799.740331 eV Total energy + Delta-G solvation = -3818.728050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.92427 -40.59173 -38.46583 -37.83766 -36.81003 -35.55252 -34.71008 -32.24330 -30.54439 -29.95717 -29.54352 -28.21631 -27.22085 -24.87676 -23.39129 -22.31678 -21.33843 -20.95936 -20.11150 -19.07116 -18.77120 -18.43703 -17.75896 -17.46499 -17.03367 -16.66761 -16.34527 -16.00099 -15.84384 -15.30785 -14.97394 -14.66046 -14.35849 -14.28968 -14.23866 -13.90207 -13.74649 -13.53604 -13.23098 -13.15501 -13.00523 -12.90006 -12.77672 -12.58301 -12.40401 -12.21448 -12.17865 -12.03648 -11.95881 -11.69952 -11.65627 -11.46678 -11.25844 -10.83319 -10.77798 -10.64695 -10.10809 -9.52270 -8.22602 -6.36411 1.35132 1.39250 1.40969 1.52265 1.57701 1.86821 2.35110 2.43583 3.08355 3.14845 3.33916 3.51696 3.64040 3.66602 3.82410 3.90269 4.23261 4.25577 4.37404 4.43704 4.49116 4.55971 4.61198 4.61542 4.63596 4.81166 4.83201 4.88830 4.94158 4.96343 4.98335 5.12250 5.13237 5.18482 5.24642 5.26669 5.30908 5.42641 5.51324 5.51576 5.76199 6.02915 6.37484 6.42013 6.56011 6.72505 7.11770 7.14472 7.35638 8.85076 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.003295 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.579889 B = 8495.373394 C = 8806.070590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.104 3.896 3 H 0.061 0.939 4 O -0.562 6.562 5 C 0.110 3.890 6 H 0.111 0.889 7 N -0.706 5.706 8 C 0.522 3.478 9 O -0.558 6.558 10 C -0.111 4.111 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.111 4.111 15 C 0.494 3.506 16 O -0.573 6.573 17 N -0.595 5.595 18 C 0.068 3.932 19 C 0.259 3.741 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.966 3.034 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.283 1.283 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.382 0.618 32 H 0.413 0.587 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.025 0.975 46 H 0.002 0.998 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 6.970 -7.166 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.043 3.957 3 H 0.079 0.921 4 O -0.368 6.368 5 C 0.000 4.000 6 H 0.129 0.871 7 N -0.361 5.361 8 C 0.310 3.690 9 O -0.437 6.437 10 C -0.132 4.132 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.159 4.159 14 C -0.149 4.149 15 C 0.281 3.719 16 O -0.453 6.453 17 N -0.325 5.325 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.576 4.576 21 H 0.079 0.921 22 C -0.191 4.191 23 N -0.569 5.569 24 Si 0.791 3.209 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.209 1.209 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.231 0.769 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.020 0.980 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.574 6.668 -6.943 22.715 hybrid contribution 2.030 0.247 0.400 2.084 sum -18.544 6.916 -6.542 20.845 Atomic orbital electron populations 1.21723 0.90639 1.03234 1.02436 1.22126 0.96692 0.94515 0.82333 0.92084 1.86453 1.28400 1.77867 1.44075 1.21573 0.90611 0.99205 0.88594 0.87128 1.45782 1.17453 1.44282 1.28553 1.21115 0.80210 0.82279 0.85359 1.90684 1.50858 1.37785 1.64325 1.22321 1.00186 0.96342 0.94387 1.22595 1.01378 0.91385 0.99870 1.22349 0.96400 0.98330 0.98598 1.22140 0.98398 0.93583 1.01790 1.22065 0.93121 0.98524 1.01229 1.20881 0.90323 0.82534 0.78192 1.90667 1.64966 1.38797 1.50840 1.48144 1.08780 1.16057 1.59566 1.22102 0.95580 0.90385 0.99377 1.18870 0.75091 0.95901 0.96282 1.21703 0.92522 1.41175 1.02161 0.92117 1.25820 0.97690 0.95285 1.00260 1.70051 1.05526 1.46519 1.34799 0.85383 0.78383 0.78021 0.79129 1.18766 1.19946 1.20940 0.92048 0.91292 0.90782 0.76904 0.74990 0.86738 0.89821 0.91520 0.90386 0.90470 0.91601 0.90583 0.91611 0.91169 0.91800 0.90368 0.88889 0.95705 0.97957 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 8.18 71.98 0.59 -2.55 16 2 C 0.10 2.98 3.41 30.59 0.10 3.08 16 3 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 4 O -0.56 -17.16 11.04 -148.98 -1.65 -18.80 16 5 C 0.11 3.34 1.81 44.24 0.08 3.42 16 6 H 0.11 3.41 6.06 -2.39 -0.01 3.40 16 7 N -0.71 -18.46 5.01 -446.09 -2.23 -20.69 16 8 C 0.52 12.59 5.73 87.66 0.50 13.09 16 9 O -0.56 -16.27 12.56 -3.05 -0.04 -16.31 16 10 C -0.11 -1.93 3.26 -10.34 -0.03 -1.96 16 11 C -0.11 -1.62 6.34 32.01 0.20 -1.42 16 12 C -0.12 -1.33 6.82 31.67 0.22 -1.11 16 13 C -0.12 -1.49 6.80 31.32 0.21 -1.28 16 14 C -0.11 -1.85 6.19 31.32 0.19 -1.66 16 15 C 0.49 19.36 5.70 87.66 0.50 19.86 16 16 O -0.57 -26.70 15.93 -3.04 -0.05 -26.75 16 17 N -0.59 -24.30 2.77 -851.11 -2.35 -26.65 16 18 C 0.07 2.15 9.37 127.77 1.20 3.35 16 19 C 0.26 13.41 5.09 85.63 0.44 13.85 16 20 C -0.54 -29.46 9.39 25.60 0.24 -29.22 16 21 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 22 C 0.01 0.47 5.46 84.66 0.46 0.93 16 23 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 24 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 28 H 0.06 1.68 7.88 -2.39 -0.02 1.66 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 30 H 0.07 1.83 5.63 -2.39 -0.01 1.82 16 31 H 0.38 12.30 7.99 -74.06 -0.59 11.71 16 32 H 0.41 10.49 7.98 -92.71 -0.74 9.75 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 1.37 6.85 -2.39 -0.02 1.35 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16 44 H 0.09 2.68 4.91 -2.39 -0.01 2.67 16 45 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 46 H 0.00 0.14 7.52 -2.39 -0.02 0.12 16 47 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -67.78 371.51 0.54 -67.23 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.35 Total: 32.36 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 4.90 Total: 18.40 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.30 Total: -101.85 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -1.73 Total: -61.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.78 0.54 -67.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412480291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.528 kcal (2) G-P(sol) polarization free energy of solvation -67.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds