Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47372 * 2 1 4 4 C 1.50706 * 109.46800 * 119.99986 * 2 1 3 5 5 O 1.21278 * 120.00039 * 119.99841 * 4 2 1 6 6 N 1.34782 * 120.00003 * 299.99601 * 4 2 1 7 7 C 1.46497 * 120.00139 * 174.85834 * 6 4 2 8 8 C 1.52999 * 112.94067 * 291.62100 * 7 6 4 9 9 C 1.52993 * 109.47341 * 303.98713 * 8 7 6 10 10 O 1.42904 * 109.47292 * 175.62267 * 9 8 7 11 11 C 1.53941 * 113.74389 * 159.88918 * 7 6 4 12 12 N 1.47571 * 86.11881 * 222.04826 * 11 7 6 13 13 C 1.36941 * 134.49578 * 204.64169 * 12 11 7 14 14 H 1.07999 * 120.00397 * 179.97438 * 13 12 11 15 15 C 1.38811 * 119.99692 * 359.97438 * 13 12 11 16 16 N 1.31619 * 119.99998 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46955 * 90.00373 * 17 15 13 19 19 H 1.48501 * 109.47025 * 209.99860 * 17 15 13 20 20 H 1.48496 * 109.47333 * 329.99908 * 17 15 13 21 21 C 1.47581 * 91.01769 * 24.63905 * 12 11 7 22 22 C 1.53003 * 109.47139 * 239.99292 * 2 1 3 23 23 H 1.09001 * 109.82370 * 185.56921 * 22 2 1 24 24 C 1.54379 * 109.82560 * 64.58992 * 22 2 1 25 25 C 1.55303 * 102.25374 * 219.12967 * 24 22 2 26 26 C 1.54948 * 100.94013 * 34.13310 * 25 24 22 27 27 O 1.43229 * 109.83188 * 306.45857 * 22 2 1 28 28 H 1.08992 * 109.47286 * 60.00384 * 1 2 3 29 29 H 1.09000 * 109.47090 * 300.00026 * 1 2 3 30 30 H 1.09004 * 109.47408 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99578 * 354.85875 * 6 4 2 32 32 H 1.08996 * 109.47401 * 63.99421 * 8 7 6 33 33 H 1.09006 * 109.46723 * 183.98810 * 8 7 6 34 34 H 1.08994 * 109.47517 * 295.62801 * 9 8 7 35 35 H 1.09000 * 109.47130 * 55.62605 * 9 8 7 36 36 H 0.96700 * 114.00071 * 180.02562 * 10 9 8 37 37 H 1.09007 * 113.76654 * 336.34733 * 11 7 6 38 38 H 1.09002 * 113.77286 * 107.73847 * 11 7 6 39 39 H 0.97003 * 119.99897 * 180.02562 * 16 15 13 40 40 H 1.08998 * 113.77487 * 221.06235 * 21 12 11 41 41 H 1.09005 * 113.77016 * 89.65971 * 21 12 11 42 42 H 1.09000 * 110.85176 * 337.32051 * 24 22 2 43 43 H 1.09001 * 110.84829 * 100.93998 * 24 22 2 44 44 H 1.09004 * 111.12472 * 276.21857 * 25 24 22 45 45 H 1.08998 * 111.16710 * 152.06889 * 25 24 22 46 46 H 1.09005 * 110.30821 * 204.63752 * 26 25 24 47 47 H 1.09001 * 110.31020 * 82.47638 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4547 7 6 2.0994 -1.0023 3.6487 8 6 1.3576 -2.3335 3.7855 9 6 -0.1511 -2.0801 3.7743 10 8 -0.8442 -3.3296 3.7993 11 6 2.1085 -0.1599 4.9371 12 7 3.3689 -0.8547 5.2632 13 6 4.0350 -1.1392 6.4254 14 1 4.9704 -1.6782 6.3936 15 6 3.5081 -0.7348 7.6442 16 7 2.3679 -0.0783 7.6830 17 14 4.4164 -1.1234 9.2296 18 1 5.3521 -0.0152 9.5484 19 1 3.4377 -1.2784 10.3356 20 1 5.1814 -2.3855 9.0651 21 6 3.6232 -1.1199 3.8339 22 6 2.0400 -0.7214 -1.2492 23 1 3.1254 -0.8118 -1.2066 24 6 1.6270 0.0638 -2.5126 25 6 1.2539 -1.0746 -3.5009 26 6 0.6555 -2.1230 -2.5295 27 8 1.4471 -2.0224 -1.3351 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.2123 0.5798 2.5450 32 1 1.6230 -2.9846 2.9527 33 1 1.6389 -2.8113 4.7241 34 1 -0.4276 -1.4936 4.6504 35 1 -0.4210 -1.5331 2.8709 36 1 -1.8075 -3.2452 3.7935 37 1 2.2288 0.9093 4.7620 38 1 1.2901 -0.3910 5.6190 39 1 1.9999 0.2046 8.5347 40 1 4.0142 -2.1177 3.6349 41 1 4.1884 -0.3328 3.3348 42 1 0.7651 0.6995 -2.3098 43 1 2.4621 0.6510 -2.8946 44 1 2.1392 -1.4647 -4.0031 45 1 0.5104 -0.7399 -4.2242 46 1 0.7378 -3.1233 -2.9549 47 1 -0.3866 -1.8875 -2.3137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485416471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -80.483191 kcal Electronic energy + Delta-G solvation = -27804.455117 eV Core-core repulsion = 23989.078083 eV Total energy + Delta-G solvation = -3815.377034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42728 -39.35813 -37.60161 -36.32307 -33.87956 -33.33289 -32.14105 -31.66081 -30.20895 -28.38683 -27.00703 -24.99029 -24.91521 -23.35408 -22.29122 -21.71500 -21.02842 -19.47001 -18.53195 -17.18955 -17.00304 -16.73426 -16.66496 -16.02458 -15.39284 -15.03828 -14.74091 -14.66910 -14.35990 -14.05804 -13.85798 -13.56722 -13.33936 -13.25618 -12.47996 -12.34949 -12.18638 -11.98378 -11.86351 -11.66046 -11.63573 -11.49234 -11.22266 -11.17617 -11.00947 -10.90440 -10.88331 -10.71193 -10.65359 -10.12125 -9.80137 -9.61138 -9.53060 -9.46496 -9.03067 -8.85148 -8.47807 -6.88663 -5.77546 -3.08946 3.06866 3.40355 3.45314 3.47809 3.52108 3.79996 4.25637 4.46786 4.52466 4.54304 4.67710 4.82062 4.93236 4.97604 5.08128 5.21385 5.23727 5.27513 5.43395 5.47315 5.50196 5.51777 5.57223 5.59712 5.68678 5.75034 5.76536 5.79374 5.92331 5.93960 6.01465 6.15115 6.41842 6.56340 6.58779 6.73176 6.83358 6.91858 7.05392 7.16213 7.39185 7.52293 7.93855 7.95158 8.00340 8.71613 9.04961 9.70714 10.58175 11.40100 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.003409 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.494372 B = 8212.256845 C = 8710.563885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 H 0.100 0.900 4 C 0.517 3.483 5 O -0.521 6.521 6 N -0.719 5.719 7 C 0.125 3.875 8 C -0.093 4.093 9 C 0.083 3.917 10 O -0.575 6.575 11 C 0.167 3.833 12 N -0.606 5.606 13 C -0.217 4.217 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.923 5.923 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.131 3.869 22 C 0.102 3.898 23 H 0.087 0.913 24 C -0.155 4.155 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.355 6.355 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.371 0.629 37 H 0.029 0.971 38 H 0.080 0.920 39 H 0.253 0.747 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 3.148 -20.762 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 H 0.118 0.882 4 C 0.302 3.698 5 O -0.396 6.396 6 N -0.371 5.371 7 C 0.039 3.961 8 C -0.132 4.132 9 C 0.005 3.995 10 O -0.379 6.379 11 C 0.040 3.960 12 N -0.332 5.332 13 C -0.345 4.345 14 H 0.100 0.900 15 C -0.204 4.204 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.004 3.996 22 C 0.044 3.956 23 H 0.105 0.895 24 C -0.192 4.192 25 C -0.193 4.193 26 C -0.032 4.032 27 O -0.273 6.273 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.216 0.784 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.341 1.998 -20.305 21.683 hybrid contribution -0.351 0.981 0.758 1.288 sum -7.692 2.979 -19.547 21.217 Atomic orbital electron populations 1.21749 0.92909 1.03220 1.02039 1.21760 0.98132 1.00518 0.94305 0.88154 1.20311 0.80349 0.84903 0.84218 1.90712 1.36490 1.25945 1.86433 1.46190 1.58732 1.26489 1.05688 1.22864 0.95953 0.92869 0.84452 1.21305 0.91746 0.96181 1.03966 1.22130 0.93327 0.84925 0.99077 1.86507 1.22234 1.31423 1.97731 1.22526 0.91504 0.93156 0.88779 1.45697 1.23371 1.64375 0.99788 1.19017 1.03184 1.30116 0.82194 0.90033 1.24763 0.97640 1.00537 0.97472 1.69790 1.19480 1.43221 1.24574 0.86097 0.78549 0.77959 0.83059 1.21675 1.21634 1.20540 1.22760 0.92371 0.98780 0.85657 1.22465 0.98148 0.82860 0.92136 0.89549 1.23275 1.02537 0.98448 0.94973 1.23252 1.01707 0.96091 0.98284 1.23393 0.94986 0.99472 0.85301 1.88637 1.65628 1.31332 1.41722 0.91940 0.92044 0.91393 0.77278 0.91018 0.89357 0.93412 0.94481 0.78388 0.95338 0.90149 0.93667 0.93051 0.94782 0.90040 0.90013 0.90425 0.90184 0.90040 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.63 37.16 0.32 -0.99 16 2 C -0.13 -1.39 2.55 -91.77 -0.23 -1.62 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.52 8.09 6.72 -10.98 -0.07 8.02 16 5 O -0.52 -10.37 13.98 -6.86 -0.10 -10.46 16 6 N -0.72 -11.07 4.32 -49.08 -0.21 -11.28 16 7 C 0.12 2.44 0.67 -134.04 -0.09 2.35 16 8 C -0.09 -1.87 4.88 -26.74 -0.13 -2.00 16 9 C 0.08 1.39 6.86 37.15 0.25 1.65 16 10 O -0.57 -9.46 13.66 -35.23 -0.48 -9.94 16 11 C 0.17 3.80 6.72 -2.98 -0.02 3.78 16 12 N -0.61 -15.77 3.54 -177.73 -0.63 -16.40 16 13 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 14 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -26.97 11.38 55.49 0.63 -26.33 16 17 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.13 2.96 7.31 -2.97 -0.02 2.94 16 22 C 0.10 1.16 2.73 -26.01 -0.07 1.09 16 23 H 0.09 1.12 7.95 -51.93 -0.41 0.70 16 24 C -0.15 -1.17 6.36 -24.79 -0.16 -1.33 16 25 C -0.16 -1.12 7.16 -24.48 -0.18 -1.29 16 26 C 0.05 0.43 7.71 38.19 0.29 0.72 16 27 O -0.35 -4.85 9.46 -47.66 -0.45 -5.30 16 28 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 29 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 30 H 0.07 0.76 7.54 -51.93 -0.39 0.37 16 31 H 0.39 4.93 8.31 -40.82 -0.34 4.59 16 32 H 0.07 1.54 7.35 -51.93 -0.38 1.15 16 33 H 0.09 2.03 8.02 -51.93 -0.42 1.62 16 34 H 0.05 0.81 7.60 -51.93 -0.39 0.41 16 35 H 0.04 0.55 7.54 -51.93 -0.39 0.16 16 36 H 0.37 4.06 9.12 45.56 0.42 4.47 16 37 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.08 2.00 6.58 -51.93 -0.34 1.66 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.52 6.07 -51.93 -0.32 0.21 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -35.10 371.22 -8.08 -43.17 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.05 Total: 6.97 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.36 Total: 6.64 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.21 Total: -54.01 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.03 Total: -25.70 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.10 -8.08 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485416471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.310 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds