Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47372 * 2 1 4 4 C 1.50706 * 109.46800 * 119.99986 * 2 1 3 5 5 O 1.21278 * 120.00039 * 119.99841 * 4 2 1 6 6 N 1.34782 * 120.00003 * 299.99601 * 4 2 1 7 7 C 1.46497 * 120.00139 * 174.85834 * 6 4 2 8 8 C 1.52999 * 112.94067 * 291.62100 * 7 6 4 9 9 C 1.52993 * 109.47341 * 303.98713 * 8 7 6 10 10 O 1.42904 * 109.47292 * 175.62267 * 9 8 7 11 11 C 1.53941 * 113.74389 * 159.88918 * 7 6 4 12 12 N 1.47571 * 86.11881 * 222.04826 * 11 7 6 13 13 C 1.36941 * 134.49578 * 204.64169 * 12 11 7 14 14 H 1.07999 * 120.00397 * 179.97438 * 13 12 11 15 15 C 1.38811 * 119.99692 * 359.97438 * 13 12 11 16 16 N 1.31619 * 119.99998 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46955 * 90.00373 * 17 15 13 19 19 H 1.48501 * 109.47025 * 209.99860 * 17 15 13 20 20 H 1.48496 * 109.47333 * 329.99908 * 17 15 13 21 21 C 1.47581 * 91.01769 * 24.63905 * 12 11 7 22 22 C 1.53003 * 109.47139 * 239.99292 * 2 1 3 23 23 H 1.09001 * 109.82370 * 185.56921 * 22 2 1 24 24 C 1.54379 * 109.82560 * 64.58992 * 22 2 1 25 25 C 1.55303 * 102.25374 * 219.12967 * 24 22 2 26 26 C 1.54948 * 100.94013 * 34.13310 * 25 24 22 27 27 O 1.43229 * 109.83188 * 306.45857 * 22 2 1 28 28 H 1.08992 * 109.47286 * 60.00384 * 1 2 3 29 29 H 1.09000 * 109.47090 * 300.00026 * 1 2 3 30 30 H 1.09004 * 109.47408 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99578 * 354.85875 * 6 4 2 32 32 H 1.08996 * 109.47401 * 63.99421 * 8 7 6 33 33 H 1.09006 * 109.46723 * 183.98810 * 8 7 6 34 34 H 1.08994 * 109.47517 * 295.62801 * 9 8 7 35 35 H 1.09000 * 109.47130 * 55.62605 * 9 8 7 36 36 H 0.96700 * 114.00071 * 180.02562 * 10 9 8 37 37 H 1.09007 * 113.76654 * 336.34733 * 11 7 6 38 38 H 1.09002 * 113.77286 * 107.73847 * 11 7 6 39 39 H 0.97003 * 119.99897 * 180.02562 * 16 15 13 40 40 H 1.08998 * 113.77487 * 221.06235 * 21 12 11 41 41 H 1.09005 * 113.77016 * 89.65971 * 21 12 11 42 42 H 1.09000 * 110.85176 * 337.32051 * 24 22 2 43 43 H 1.09001 * 110.84829 * 100.93998 * 24 22 2 44 44 H 1.09004 * 111.12472 * 276.21857 * 25 24 22 45 45 H 1.08998 * 111.16710 * 152.06889 * 25 24 22 46 46 H 1.09005 * 110.30821 * 204.63752 * 26 25 24 47 47 H 1.09001 * 110.31020 * 82.47638 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2499 2.4547 7 6 2.0994 -1.0023 3.6487 8 6 1.3576 -2.3335 3.7855 9 6 -0.1511 -2.0801 3.7743 10 8 -0.8442 -3.3296 3.7993 11 6 2.1085 -0.1599 4.9371 12 7 3.3689 -0.8547 5.2632 13 6 4.0350 -1.1392 6.4254 14 1 4.9704 -1.6782 6.3936 15 6 3.5081 -0.7348 7.6442 16 7 2.3679 -0.0783 7.6830 17 14 4.4164 -1.1234 9.2296 18 1 5.3521 -0.0152 9.5484 19 1 3.4377 -1.2784 10.3356 20 1 5.1814 -2.3855 9.0651 21 6 3.6232 -1.1199 3.8339 22 6 2.0400 -0.7214 -1.2492 23 1 3.1254 -0.8118 -1.2066 24 6 1.6270 0.0638 -2.5126 25 6 1.2539 -1.0746 -3.5009 26 6 0.6555 -2.1230 -2.5295 27 8 1.4471 -2.0224 -1.3351 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.2123 0.5798 2.5450 32 1 1.6230 -2.9846 2.9527 33 1 1.6389 -2.8113 4.7241 34 1 -0.4276 -1.4936 4.6504 35 1 -0.4210 -1.5331 2.8709 36 1 -1.8075 -3.2452 3.7935 37 1 2.2288 0.9093 4.7620 38 1 1.2901 -0.3910 5.6190 39 1 1.9999 0.2046 8.5347 40 1 4.0142 -2.1177 3.6349 41 1 4.1884 -0.3328 3.3348 42 1 0.7651 0.6995 -2.3098 43 1 2.4621 0.6510 -2.8946 44 1 2.1392 -1.4647 -4.0031 45 1 0.5104 -0.7399 -4.2242 46 1 0.7378 -3.1233 -2.9549 47 1 -0.3866 -1.8875 -2.3137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485416471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -107.565105 kcal Electronic energy + Delta-G solvation = -27805.629477 eV Core-core repulsion = 23989.078083 eV Total energy + Delta-G solvation = -3816.551394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66241 -40.55460 -39.02770 -37.71537 -35.28381 -34.67194 -33.52161 -32.78326 -31.77510 -29.25143 -28.84474 -26.85361 -25.92631 -24.90821 -23.44586 -22.89783 -22.19075 -20.59950 -20.10422 -18.78089 -18.48339 -17.88332 -17.78994 -17.17359 -16.68836 -16.64584 -16.29592 -15.90456 -15.57580 -15.52073 -15.15034 -15.01272 -14.45977 -14.30204 -14.07065 -13.72618 -13.33307 -13.31193 -13.09352 -12.88374 -12.85454 -12.76424 -12.57791 -12.56809 -12.39987 -12.27337 -12.07069 -11.96946 -11.90316 -11.72382 -11.50629 -11.34891 -10.97456 -10.86320 -10.47679 -10.32677 -9.98271 -8.96992 -7.94108 -5.27316 1.44927 1.46706 1.55451 1.83258 2.19596 2.49639 3.03827 3.15098 3.25803 3.38754 3.59705 3.61560 3.77409 3.92095 4.04509 4.11723 4.15726 4.23335 4.29097 4.32724 4.45753 4.48360 4.49785 4.68731 4.71259 4.76242 4.84263 4.86071 4.88637 4.98512 4.99336 5.04210 5.07410 5.11729 5.14382 5.18815 5.22048 5.27268 5.45888 5.46241 5.76051 5.89187 6.29449 6.74131 6.89836 6.91179 7.47271 7.55308 8.49377 9.22636 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.003409 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.494372 B = 8212.256845 C = 8710.563885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 H 0.132 0.868 4 C 0.513 3.487 5 O -0.568 6.568 6 N -0.708 5.708 7 C 0.157 3.843 8 C -0.087 4.087 9 C 0.094 3.906 10 O -0.593 6.593 11 C 0.174 3.826 12 N -0.632 5.632 13 C -0.240 4.240 14 H 0.077 0.923 15 C -0.057 4.057 16 N -0.946 5.946 17 Si 0.979 3.021 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.128 3.872 22 C 0.094 3.906 23 H 0.059 0.941 24 C -0.144 4.144 25 C -0.149 4.149 26 C 0.036 3.964 27 O -0.395 6.395 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 4.938 -22.430 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 H 0.150 0.850 4 C 0.301 3.699 5 O -0.446 6.446 6 N -0.361 5.361 7 C 0.069 3.931 8 C -0.126 4.126 9 C 0.017 3.983 10 O -0.401 6.401 11 C 0.048 3.952 12 N -0.359 5.359 13 C -0.368 4.368 14 H 0.095 0.905 15 C -0.251 4.251 16 N -0.594 5.594 17 Si 0.806 3.194 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.199 1.199 21 C 0.002 3.998 22 C 0.036 3.964 23 H 0.077 0.923 24 C -0.181 4.181 25 C -0.186 4.186 26 C -0.041 4.041 27 O -0.314 6.314 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.946 3.818 -22.014 24.067 hybrid contribution 0.153 0.346 1.220 1.277 sum -8.794 4.164 -20.794 22.958 Atomic orbital electron populations 1.21763 0.90920 1.02518 1.04261 1.21825 0.99565 1.01175 0.91168 0.85004 1.21248 0.79157 0.84369 0.85153 1.90704 1.38567 1.28241 1.87069 1.45963 1.58847 1.26867 1.04460 1.22108 0.93657 0.92330 0.85023 1.21151 0.94687 0.95714 1.01027 1.21935 0.90843 0.85249 1.00286 1.86444 1.24641 1.31275 1.97771 1.22408 0.89567 0.93488 0.89694 1.45980 1.24511 1.65037 1.00381 1.19310 1.03457 1.30383 0.83659 0.90530 1.25548 0.98575 1.00661 1.00287 1.69937 1.20498 1.43903 1.25042 0.85088 0.77376 0.77930 0.78969 1.21058 1.21531 1.19922 1.22811 0.94852 0.97787 0.84328 1.22545 0.96710 0.82996 0.94187 0.92345 1.23261 1.03805 0.98287 0.92770 1.23243 1.02117 0.95119 0.98123 1.23600 0.95298 1.00363 0.84806 1.88602 1.66369 1.32836 1.43638 0.88889 0.90697 0.93518 0.75013 0.92759 0.93208 0.93390 0.91851 0.75390 0.94750 0.92276 0.93915 0.94847 0.94338 0.87918 0.88661 0.90819 0.87565 0.90293 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.63 71.98 0.62 -1.42 16 2 C -0.12 -2.28 2.55 -11.54 -0.03 -2.31 16 3 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.51 15.66 6.72 87.66 0.59 16.25 16 5 O -0.57 -23.18 13.98 8.86 0.12 -23.05 16 6 N -0.71 -21.01 4.32 -427.58 -1.85 -22.86 16 7 C 0.16 6.21 0.67 5.36 0.00 6.21 16 8 C -0.09 -3.59 4.88 30.59 0.15 -3.44 16 9 C 0.09 3.10 6.86 71.98 0.49 3.59 16 10 O -0.59 -18.99 13.66 -148.98 -2.04 -21.02 16 11 C 0.17 8.07 6.72 86.48 0.58 8.65 16 12 N -0.63 -33.95 3.54 -716.23 -2.54 -36.48 16 13 C -0.24 -14.03 10.70 84.03 0.90 -13.13 16 14 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 15 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 16 N -0.95 -55.94 11.38 21.65 0.25 -55.69 16 17 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 21 C 0.13 6.02 7.31 86.48 0.63 6.65 16 22 C 0.09 2.01 2.73 31.06 0.08 2.09 16 23 H 0.06 1.53 7.95 -2.39 -0.02 1.51 16 24 C -0.14 -1.70 6.36 31.85 0.20 -1.49 16 25 C -0.15 -1.72 7.16 32.05 0.23 -1.49 16 26 C 0.04 0.62 7.71 72.65 0.56 1.18 16 27 O -0.39 -10.66 9.46 -137.10 -1.30 -11.96 16 28 H 0.09 0.85 6.35 -2.39 -0.02 0.83 16 29 H 0.07 0.92 7.69 -2.39 -0.02 0.90 16 30 H 0.05 0.92 7.54 -2.38 -0.02 0.90 16 31 H 0.41 9.29 8.31 -92.70 -0.77 8.52 16 32 H 0.05 2.42 7.35 -2.39 -0.02 2.41 16 33 H 0.05 2.42 8.02 -2.38 -0.02 2.40 16 34 H 0.05 1.59 7.60 -2.39 -0.02 1.57 16 35 H 0.06 1.75 7.54 -2.39 -0.02 1.74 16 36 H 0.40 7.91 9.12 -74.06 -0.68 7.24 16 37 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.06 3.01 6.58 -2.39 -0.02 2.99 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.03 1.66 8.10 -2.39 -0.02 1.64 16 41 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.10 0.79 6.07 -2.39 -0.01 0.78 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 46 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -79.78 371.22 -0.30 -80.08 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.47 Total: 23.95 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 5.48 Total: 18.53 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.14 Total: -115.04 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -3.21 Total: -56.03 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.78 -0.30 -80.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485416471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.483 kcal (2) G-P(sol) polarization free energy of solvation -79.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds