Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47483 * 2 1 4 4 C 1.50700 * 109.47183 * 239.99415 * 2 1 3 5 5 O 1.21280 * 120.00264 * 240.00335 * 4 2 1 6 6 N 1.34775 * 119.99776 * 60.00632 * 4 2 1 7 7 C 1.46506 * 120.00062 * 184.59781 * 6 4 2 8 8 C 1.53000 * 113.41040 * 306.73399 * 7 6 4 9 9 C 1.53002 * 109.47192 * 289.34851 * 8 7 6 10 10 O 1.42899 * 109.47160 * 184.70483 * 9 8 7 11 11 C 1.53496 * 114.20841 * 173.53524 * 7 6 4 12 12 N 1.47064 * 87.98509 * 220.34663 * 11 7 6 13 13 C 1.36937 * 136.05687 * 207.08745 * 12 11 7 14 14 H 1.07999 * 119.99779 * 352.96799 * 13 12 11 15 15 C 1.38809 * 120.00182 * 172.96222 * 13 12 11 16 16 N 1.31618 * 120.00197 * 177.07329 * 15 13 12 17 17 Si 1.86804 * 120.00051 * 357.07593 * 15 13 12 18 18 H 1.48498 * 109.47310 * 175.52750 * 17 15 13 19 19 H 1.48504 * 109.46962 * 295.53157 * 17 15 13 20 20 H 1.48507 * 109.46877 * 55.52629 * 17 15 13 21 21 C 1.47062 * 87.88598 * 27.33913 * 12 11 7 22 22 C 1.53009 * 109.46809 * 119.99819 * 2 1 3 23 23 H 1.09002 * 110.32995 * 62.25385 * 22 2 1 24 24 C 1.54477 * 110.37006 * 299.99802 * 22 2 1 25 25 C 1.54508 * 104.06130 * 217.18905 * 24 22 2 26 26 C 1.54480 * 104.06389 * 0.02562 * 25 24 22 27 27 O 1.44421 * 110.37019 * 184.61803 * 22 2 1 28 28 H 1.09001 * 109.47014 * 60.00455 * 1 2 3 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47344 * 300.00451 * 1 2 3 31 31 H 0.97000 * 120.00439 * 4.59650 * 6 4 2 32 32 H 1.08997 * 109.47451 * 49.34473 * 8 7 6 33 33 H 1.09003 * 109.47256 * 169.35222 * 8 7 6 34 34 H 1.09002 * 109.47219 * 304.70434 * 9 8 7 35 35 H 1.08996 * 109.47554 * 64.70156 * 9 8 7 36 36 H 0.96703 * 113.99808 * 179.97438 * 10 9 8 37 37 H 1.08992 * 113.47107 * 105.56131 * 11 7 6 38 38 H 1.09005 * 113.46595 * 335.12222 * 11 7 6 39 39 H 0.97000 * 119.99556 * 354.98449 * 16 15 13 40 40 H 1.09003 * 113.46985 * 87.43980 * 21 12 11 41 41 H 1.09005 * 113.46953 * 217.87842 * 21 12 11 42 42 H 1.08997 * 110.51610 * 335.83774 * 24 22 2 43 43 H 1.09001 * 110.50971 * 98.41323 * 24 22 2 44 44 H 1.09007 * 110.51004 * 118.64473 * 25 24 22 45 45 H 1.08999 * 110.51494 * 241.21957 * 25 24 22 46 46 H 1.09002 * 110.37238 * 142.80958 * 26 25 24 47 47 H 1.09004 * 110.36794 * 265.14410 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1099 -0.9965 -3.6490 8 6 3.6080 -1.3039 -3.6969 9 6 4.3859 -0.0114 -3.9525 10 8 5.7741 -0.3135 -4.1063 11 6 1.5392 -0.4405 -4.9610 12 7 1.3213 -1.8290 -5.3940 13 6 1.2516 -2.4888 -6.5919 14 1 1.2604 -1.9312 -7.5168 15 6 1.1696 -3.8742 -6.6175 16 7 1.0446 -4.5050 -7.7659 17 14 1.2367 -4.8434 -5.0220 18 1 1.0218 -6.2845 -5.3088 19 1 2.5658 -4.6581 -4.3858 20 1 0.1760 -4.3580 -4.1029 21 6 1.2048 -2.1959 -3.9747 22 6 2.0399 -0.7213 1.2494 23 1 1.7174 -1.7625 1.2437 24 6 1.5364 -0.0092 2.5245 25 6 2.7228 -0.1179 3.5083 26 6 3.8029 -0.8822 2.7111 27 8 3.4798 -0.6390 1.3248 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.2056 0.5755 -2.5447 32 1 3.9212 -1.7343 -2.7457 33 1 3.8078 -2.0131 -4.5001 34 1 4.0144 0.4626 -4.8611 35 1 4.2527 0.6658 -3.1090 36 1 6.3291 0.4608 -4.2720 37 1 2.2752 0.0917 -5.5635 38 1 0.6155 0.1228 -4.8283 39 1 0.9365 -4.0003 -8.5871 40 1 0.1929 -2.0953 -3.5819 41 1 1.6559 -3.1593 -3.7369 42 1 1.3093 1.0358 2.3140 43 1 0.6585 -0.5169 2.9240 44 1 3.0822 0.8735 3.7842 45 1 2.4321 -0.6786 4.3967 46 1 4.7937 -0.4923 2.9443 47 1 3.7527 -1.9488 2.9303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485416473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = -69.207374 kcal Electronic energy + Delta-G solvation = -27871.081940 eV Core-core repulsion = 24056.193862 eV Total energy + Delta-G solvation = -3814.888078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.55494 -39.55499 -38.02070 -36.45682 -34.25784 -33.62681 -32.18086 -31.95852 -30.45101 -28.13941 -27.23652 -25.66815 -24.96951 -23.25106 -22.54362 -21.64172 -20.81659 -19.75071 -18.93192 -17.48754 -17.38655 -17.20976 -16.39250 -15.96686 -15.81404 -15.63241 -15.29040 -14.62024 -14.50112 -13.97761 -13.89246 -13.73819 -13.46593 -13.33596 -13.06661 -12.60411 -12.26731 -12.18113 -11.89735 -11.88886 -11.83505 -11.66192 -11.48292 -11.31311 -11.20944 -11.09507 -10.83771 -10.76056 -10.53707 -10.26180 -9.81611 -9.76826 -9.36985 -9.16288 -9.02592 -8.87612 -8.56174 -7.17782 -6.31301 -3.25450 2.87950 3.28232 3.48407 3.55399 3.70740 3.72274 4.30173 4.35048 4.43687 4.62490 4.64078 4.67790 4.76170 4.83369 4.96346 5.00712 5.06149 5.16289 5.31411 5.41082 5.44091 5.44316 5.47608 5.49632 5.55886 5.59239 5.63413 5.70271 5.75606 5.78854 5.86085 5.93690 5.99423 6.11275 6.28301 6.33627 6.36999 6.61309 6.76317 6.81165 7.03447 7.07855 7.77389 7.87016 8.22905 8.51653 8.96505 9.48279 10.31795 11.20951 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.004138 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.801804 B = 6765.498002 C = 7313.048221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.101 0.899 4 C 0.517 3.483 5 O -0.516 6.516 6 N -0.718 5.718 7 C 0.135 3.865 8 C -0.108 4.108 9 C 0.085 3.915 10 O -0.571 6.571 11 C 0.122 3.878 12 N -0.617 5.617 13 C -0.303 4.303 14 H 0.084 0.916 15 C -0.017 4.017 16 N -0.932 5.932 17 Si 1.067 2.933 18 H -0.295 1.295 19 H -0.287 1.287 20 H -0.291 1.291 21 C 0.102 3.898 22 C 0.095 3.905 23 H 0.076 0.924 24 C -0.150 4.150 25 C -0.156 4.156 26 C 0.043 3.957 27 O -0.355 6.355 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.372 0.628 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 15.296 21.796 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.119 0.881 4 C 0.302 3.698 5 O -0.390 6.390 6 N -0.370 5.370 7 C 0.049 3.951 8 C -0.146 4.146 9 C 0.008 3.992 10 O -0.376 6.376 11 C -0.005 4.005 12 N -0.346 5.346 13 C -0.429 4.429 14 H 0.101 0.899 15 C -0.216 4.216 16 N -0.574 5.574 17 Si 0.899 3.101 18 H -0.223 1.223 19 H -0.215 1.215 20 H -0.218 1.218 21 C -0.025 4.025 22 C 0.037 3.963 23 H 0.094 0.906 24 C -0.188 4.188 25 C -0.194 4.194 26 C -0.034 4.034 27 O -0.273 6.273 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.217 0.783 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.222 12.307 22.139 25.359 hybrid contribution -0.464 2.684 -0.585 2.786 sum 0.758 14.991 21.553 26.265 Atomic orbital electron populations 1.21767 0.91986 1.03400 1.02994 1.21410 0.97442 1.01115 0.92814 0.88109 1.20381 0.80219 0.84995 0.84203 1.90695 1.35951 1.26116 1.86267 1.45992 1.58029 1.27527 1.05455 1.22408 0.94573 0.94653 0.83514 1.21461 0.90228 0.97397 1.05489 1.22104 0.81076 0.97480 0.98541 1.86531 1.18725 1.37040 1.95261 1.22646 0.97069 0.89909 0.90916 1.45696 1.84631 1.03343 1.00898 1.20107 1.50069 0.90923 0.81830 0.89854 1.25684 0.98765 0.93072 1.04110 1.70926 1.51317 1.37175 0.97957 0.83773 0.76743 0.75526 0.74013 1.22272 1.21486 1.21818 1.23136 0.96472 0.96709 0.86142 1.22733 0.81942 0.98964 0.92653 0.90588 1.23027 0.98612 1.01859 0.95329 1.22947 0.95971 1.01559 0.98877 1.23371 0.98801 0.99267 0.81996 1.89254 1.20526 1.92427 1.25134 0.91301 0.91600 0.91287 0.76980 0.88420 0.89271 0.93798 0.94575 0.78278 0.92793 0.94108 0.92873 0.93736 0.92778 0.90515 0.90383 0.90819 0.90672 0.89303 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.86 37.15 0.33 -0.81 16 2 C -0.11 -1.11 2.40 -91.77 -0.22 -1.33 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.52 7.72 6.86 -10.99 -0.08 7.64 16 5 O -0.52 -10.04 13.18 -8.25 -0.11 -10.15 16 6 N -0.72 -10.10 5.15 -47.30 -0.24 -10.34 16 7 C 0.14 2.49 0.85 -131.57 -0.11 2.37 16 8 C -0.11 -2.14 4.96 -26.73 -0.13 -2.27 16 9 C 0.09 1.39 6.91 37.16 0.26 1.64 16 10 O -0.57 -9.37 13.66 -35.23 -0.48 -9.85 16 11 C 0.12 2.32 7.80 -8.51 -0.07 2.26 16 12 N -0.62 -15.31 3.46 -184.59 -0.64 -15.95 16 13 C -0.30 -8.83 11.09 -15.06 -0.17 -9.00 16 14 H 0.08 2.52 8.05 -52.49 -0.42 2.10 16 15 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 16 N -0.93 -29.91 13.70 55.49 0.76 -29.15 16 17 Si 1.07 28.45 24.98 -169.99 -4.25 24.20 16 18 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 19 H -0.29 -7.56 6.82 56.52 0.39 -7.18 16 20 H -0.29 -7.28 6.35 56.52 0.36 -6.92 16 21 C 0.10 2.29 5.37 -8.38 -0.05 2.25 16 22 C 0.10 1.06 2.29 -25.95 -0.06 1.00 16 23 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 24 C -0.15 -1.14 5.54 -25.16 -0.14 -1.28 16 25 C -0.16 -1.12 7.09 -25.16 -0.18 -1.30 16 26 C 0.04 0.42 7.63 37.93 0.29 0.71 16 27 O -0.35 -4.83 10.60 -49.04 -0.52 -5.35 16 28 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.40 7.11 -51.93 -0.37 0.03 16 31 H 0.40 4.13 8.25 -40.82 -0.34 3.79 16 32 H 0.10 2.11 5.67 -51.93 -0.29 1.81 16 33 H 0.09 2.08 7.93 -51.93 -0.41 1.66 16 34 H 0.04 0.67 6.47 -51.93 -0.34 0.34 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.37 3.97 9.12 45.56 0.42 4.39 16 37 H 0.05 0.99 6.52 -51.93 -0.34 0.65 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.35 3.87 -51.93 -0.20 1.14 16 42 H 0.08 0.50 7.65 -51.93 -0.40 0.10 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -37.42 364.71 -7.35 -44.77 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.95 Total: 5.08 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.42 Total: 1.26 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.12 Total: -55.45 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.11 Total: -25.36 kcal Atomic # 14 Polarization: 28.45 SS G_CDS: -4.25 Total: 24.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.42 -7.35 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485416473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.437 kcal (2) G-P(sol) polarization free energy of solvation -37.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds