Wall clock time and date at job start Fri Apr 10 2020 18:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47483 * 2 1 4 4 C 1.50700 * 109.47183 * 239.99415 * 2 1 3 5 5 O 1.21280 * 120.00264 * 240.00335 * 4 2 1 6 6 N 1.34775 * 119.99776 * 60.00632 * 4 2 1 7 7 C 1.46506 * 120.00062 * 184.59781 * 6 4 2 8 8 C 1.53000 * 113.41040 * 306.73399 * 7 6 4 9 9 C 1.53002 * 109.47192 * 289.34851 * 8 7 6 10 10 O 1.42899 * 109.47160 * 184.70483 * 9 8 7 11 11 C 1.53496 * 114.20841 * 173.53524 * 7 6 4 12 12 N 1.47064 * 87.98509 * 220.34663 * 11 7 6 13 13 C 1.36937 * 136.05687 * 207.08745 * 12 11 7 14 14 H 1.07999 * 119.99779 * 352.96799 * 13 12 11 15 15 C 1.38809 * 120.00182 * 172.96222 * 13 12 11 16 16 N 1.31618 * 120.00197 * 177.07329 * 15 13 12 17 17 Si 1.86804 * 120.00051 * 357.07593 * 15 13 12 18 18 H 1.48498 * 109.47310 * 175.52750 * 17 15 13 19 19 H 1.48504 * 109.46962 * 295.53157 * 17 15 13 20 20 H 1.48507 * 109.46877 * 55.52629 * 17 15 13 21 21 C 1.47062 * 87.88598 * 27.33913 * 12 11 7 22 22 C 1.53009 * 109.46809 * 119.99819 * 2 1 3 23 23 H 1.09002 * 110.32995 * 62.25385 * 22 2 1 24 24 C 1.54477 * 110.37006 * 299.99802 * 22 2 1 25 25 C 1.54508 * 104.06130 * 217.18905 * 24 22 2 26 26 C 1.54480 * 104.06389 * 0.02562 * 25 24 22 27 27 O 1.44421 * 110.37019 * 184.61803 * 22 2 1 28 28 H 1.09001 * 109.47014 * 60.00455 * 1 2 3 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47344 * 300.00451 * 1 2 3 31 31 H 0.97000 * 120.00439 * 4.59650 * 6 4 2 32 32 H 1.08997 * 109.47451 * 49.34473 * 8 7 6 33 33 H 1.09003 * 109.47256 * 169.35222 * 8 7 6 34 34 H 1.09002 * 109.47219 * 304.70434 * 9 8 7 35 35 H 1.08996 * 109.47554 * 64.70156 * 9 8 7 36 36 H 0.96703 * 113.99808 * 179.97438 * 10 9 8 37 37 H 1.08992 * 113.47107 * 105.56131 * 11 7 6 38 38 H 1.09005 * 113.46595 * 335.12222 * 11 7 6 39 39 H 0.97000 * 119.99556 * 354.98449 * 16 15 13 40 40 H 1.09003 * 113.46985 * 87.43980 * 21 12 11 41 41 H 1.09005 * 113.46953 * 217.87842 * 21 12 11 42 42 H 1.08997 * 110.51610 * 335.83774 * 24 22 2 43 43 H 1.09001 * 110.50971 * 98.41323 * 24 22 2 44 44 H 1.09007 * 110.51004 * 118.64473 * 25 24 22 45 45 H 1.08999 * 110.51494 * 241.21957 * 25 24 22 46 46 H 1.09002 * 110.37238 * 142.80958 * 26 25 24 47 47 H 1.09004 * 110.36794 * 265.14410 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1099 -0.9965 -3.6490 8 6 3.6080 -1.3039 -3.6969 9 6 4.3859 -0.0114 -3.9525 10 8 5.7741 -0.3135 -4.1063 11 6 1.5392 -0.4405 -4.9610 12 7 1.3213 -1.8290 -5.3940 13 6 1.2516 -2.4888 -6.5919 14 1 1.2604 -1.9312 -7.5168 15 6 1.1696 -3.8742 -6.6175 16 7 1.0446 -4.5050 -7.7659 17 14 1.2367 -4.8434 -5.0220 18 1 1.0218 -6.2845 -5.3088 19 1 2.5658 -4.6581 -4.3858 20 1 0.1760 -4.3580 -4.1029 21 6 1.2048 -2.1959 -3.9747 22 6 2.0399 -0.7213 1.2494 23 1 1.7174 -1.7625 1.2437 24 6 1.5364 -0.0092 2.5245 25 6 2.7228 -0.1179 3.5083 26 6 3.8029 -0.8822 2.7111 27 8 3.4798 -0.6390 1.3248 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.2056 0.5755 -2.5447 32 1 3.9212 -1.7343 -2.7457 33 1 3.8078 -2.0131 -4.5001 34 1 4.0144 0.4626 -4.8611 35 1 4.2527 0.6658 -3.1090 36 1 6.3291 0.4608 -4.2720 37 1 2.2752 0.0917 -5.5635 38 1 0.6155 0.1228 -4.8283 39 1 0.9365 -4.0003 -8.5871 40 1 0.1929 -2.0953 -3.5819 41 1 1.6559 -3.1593 -3.7369 42 1 1.3093 1.0358 2.3140 43 1 0.6585 -0.5169 2.9240 44 1 3.0822 0.8735 3.7842 45 1 2.4321 -0.6786 4.3967 46 1 4.7937 -0.4923 2.9443 47 1 3.7527 -1.9488 2.9303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485416473.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:28 Heat of formation + Delta-G solvation = -100.718908 kcal Electronic energy + Delta-G solvation = -27872.448382 eV Core-core repulsion = 24056.193862 eV Total energy + Delta-G solvation = -3816.254520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.86437 -40.62174 -39.29282 -37.78247 -35.44846 -35.06737 -33.96900 -32.77089 -31.92898 -29.28640 -28.70839 -27.35339 -25.89584 -24.65055 -23.64351 -23.02753 -21.86909 -20.82701 -20.48551 -19.55905 -18.54931 -18.45272 -17.61292 -17.05925 -16.92715 -16.77214 -16.55867 -16.01591 -15.89473 -15.46331 -15.21445 -15.07034 -14.89548 -14.51847 -14.13148 -13.81252 -13.54952 -13.46432 -13.31210 -13.15410 -12.89372 -12.73326 -12.62834 -12.54102 -12.46101 -12.40677 -12.00457 -11.94457 -11.91708 -11.41038 -11.39564 -11.26181 -11.03874 -10.94261 -10.65948 -10.35472 -10.02925 -9.26503 -8.68174 -5.53073 1.30832 1.38996 1.57491 1.73065 2.07048 2.42433 2.90309 2.97724 3.03747 3.15843 3.48284 3.62830 3.69271 3.91467 4.03080 4.03582 4.13613 4.14825 4.22073 4.24774 4.33503 4.41073 4.47410 4.49331 4.49866 4.54462 4.62152 4.76060 4.81115 4.87873 4.90754 4.94226 4.99408 5.00434 5.05615 5.13347 5.17882 5.21309 5.25228 5.32714 5.63275 5.90481 6.00853 6.64746 6.67112 6.89203 7.25710 7.39185 8.18089 8.87156 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.004138 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.801804 B = 6765.498002 C = 7313.048221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.127 0.873 4 C 0.511 3.489 5 O -0.566 6.566 6 N -0.701 5.701 7 C 0.161 3.839 8 C -0.107 4.107 9 C 0.095 3.905 10 O -0.596 6.596 11 C 0.129 3.871 12 N -0.649 5.649 13 C -0.280 4.280 14 H 0.064 0.936 15 C -0.073 4.073 16 N -0.970 5.970 17 Si 1.102 2.898 18 H -0.301 1.301 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.090 3.910 22 C 0.086 3.914 23 H 0.049 0.951 24 C -0.141 4.141 25 C -0.149 4.149 26 C 0.032 3.968 27 O -0.392 6.392 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.420 0.580 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 19.006 24.656 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.145 0.855 4 C 0.299 3.701 5 O -0.444 6.444 6 N -0.355 5.355 7 C 0.072 3.928 8 C -0.145 4.145 9 C 0.017 3.983 10 O -0.404 6.404 11 C 0.004 3.996 12 N -0.378 5.378 13 C -0.407 4.407 14 H 0.082 0.918 15 C -0.266 4.266 16 N -0.616 5.616 17 Si 0.932 3.068 18 H -0.229 1.229 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.036 4.036 22 C 0.028 3.972 23 H 0.067 0.933 24 C -0.179 4.179 25 C -0.186 4.186 26 C -0.045 4.045 27 O -0.312 6.312 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.258 0.742 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.049 16.125 25.045 29.787 hybrid contribution -0.006 1.608 -1.431 2.152 sum 0.043 17.733 23.614 29.531 Atomic orbital electron populations 1.21820 0.89638 1.03089 1.05268 1.21466 0.99095 1.01374 0.89688 0.85524 1.21307 0.79068 0.84410 0.85354 1.90694 1.38180 1.28548 1.86969 1.45713 1.57993 1.27896 1.03887 1.21701 0.92813 0.92989 0.85282 1.21359 0.92156 0.98514 1.02513 1.21979 0.80797 0.95417 1.00074 1.86472 1.19151 1.39384 1.95410 1.22864 0.98827 0.87430 0.90503 1.45705 1.85127 1.06422 1.00506 1.20011 1.46629 0.90938 0.83159 0.91808 1.26581 0.99939 0.94664 1.05426 1.70985 1.54856 1.37488 0.98246 0.83275 0.77046 0.74369 0.72085 1.22856 1.22365 1.19289 1.23340 0.97947 0.97340 0.84986 1.22863 0.81219 0.98284 0.94875 0.93310 1.23019 0.98989 1.02663 0.93221 1.22937 0.94829 1.02016 0.98853 1.23565 1.00365 0.99424 0.81159 1.89212 1.22120 1.92543 1.27310 0.89812 0.93211 0.88292 0.74176 0.90596 0.93802 0.92452 0.92136 0.75319 0.91722 0.90195 0.93918 0.92182 0.95576 0.88479 0.88872 0.89486 0.89209 0.88585 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.86 71.98 0.64 -1.01 16 2 C -0.10 -1.68 2.40 -11.54 -0.03 -1.71 16 3 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.51 14.28 6.86 87.66 0.60 14.88 16 5 O -0.57 -22.18 13.18 10.17 0.13 -22.05 16 6 N -0.70 -17.54 5.15 -421.96 -2.17 -19.72 16 7 C 0.16 5.62 0.85 4.16 0.00 5.63 16 8 C -0.11 -4.24 4.96 30.60 0.15 -4.09 16 9 C 0.09 2.89 6.91 71.98 0.50 3.39 16 10 O -0.60 -18.81 13.66 -148.98 -2.04 -20.85 16 11 C 0.13 4.56 7.80 83.18 0.65 5.21 16 12 N -0.65 -31.76 3.46 -737.92 -2.55 -34.31 16 13 C -0.28 -16.52 11.09 84.03 0.93 -15.59 16 14 H 0.06 3.95 8.05 -2.91 -0.02 3.93 16 15 C -0.07 -4.55 5.50 84.86 0.47 -4.09 16 16 N -0.97 -64.44 13.70 21.65 0.30 -64.14 16 17 Si 1.10 59.63 24.98 68.60 1.71 61.34 16 18 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 19 H -0.30 -16.11 6.82 99.48 0.68 -15.44 16 20 H -0.27 -13.16 6.35 99.48 0.63 -12.53 16 21 C 0.09 3.97 5.37 83.26 0.45 4.42 16 22 C 0.09 1.76 2.29 31.10 0.07 1.83 16 23 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 24 C -0.14 -1.62 5.54 31.61 0.18 -1.44 16 25 C -0.15 -1.70 7.09 31.61 0.22 -1.48 16 26 C 0.03 0.58 7.63 72.49 0.55 1.14 16 27 O -0.39 -10.39 10.60 -135.78 -1.44 -11.83 16 28 H 0.08 0.75 7.67 -2.39 -0.02 0.73 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.61 7.11 -2.39 -0.02 0.60 16 31 H 0.42 6.68 8.25 -92.71 -0.76 5.92 16 32 H 0.08 3.37 5.67 -2.39 -0.01 3.35 16 33 H 0.04 2.11 7.93 -2.39 -0.02 2.09 16 34 H 0.06 1.60 6.47 -2.39 -0.02 1.58 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.40 7.64 9.12 -74.05 -0.68 6.96 16 37 H 0.06 2.18 6.52 -2.39 -0.02 2.16 16 38 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.03 1.32 3.87 -2.38 -0.01 1.31 16 42 H 0.10 0.75 7.65 -2.39 -0.02 0.73 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -87.10 364.71 -1.27 -88.37 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.59 Total: 16.11 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.38 Total: 7.08 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -4.43 Total: -118.17 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -3.34 Total: -54.73 kcal Atomic # 14 Polarization: 59.63 SS G_CDS: 1.71 Total: 61.34 kcal Total: -87.10 -1.27 -88.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485416473.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.351 kcal (2) G-P(sol) polarization free energy of solvation -87.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds