Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46958 * 2 1 4 4 C 1.42908 * 114.00091 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61555 * 150.00030 * 4 3 2 6 6 C 1.53781 * 87.08110 * 89.19934 * 5 4 3 7 7 C 1.52996 * 113.61504 * 139.98011 * 6 5 4 8 8 C 1.50693 * 109.47467 * 175.00134 * 7 6 5 9 9 O 1.21287 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46687 * 180.02562 * 11 10 8 13 13 O 1.42902 * 112.94314 * 53.40865 * 12 11 10 14 14 C 1.53937 * 113.74276 * 281.67199 * 12 11 10 15 15 N 1.47577 * 86.12071 * 222.04937 * 14 12 11 16 16 C 1.36931 * 134.49446 * 204.64007 * 15 14 12 17 17 H 1.08004 * 119.99907 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00170 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00325 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00277 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47185 * 59.99553 * 20 18 16 22 22 H 1.48501 * 109.47479 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46958 * 300.00078 * 20 18 16 24 24 C 1.47585 * 91.01284 * 24.64079 * 15 14 12 25 25 C 1.53779 * 113.69355 * 247.53811 * 4 3 2 26 26 H 1.08992 * 109.47253 * 59.99648 * 1 2 3 27 27 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47208 * 299.99643 * 1 2 3 29 29 H 1.09001 * 109.47208 * 240.00357 * 2 1 3 30 30 H 1.09002 * 109.47766 * 120.00236 * 2 1 3 31 31 H 1.09000 * 112.84390 * 18.80412 * 4 3 2 32 32 H 1.09002 * 113.61479 * 334.65678 * 5 4 3 33 33 H 1.08993 * 113.61697 * 203.75480 * 5 4 3 34 34 H 1.09000 * 113.61377 * 270.80013 * 6 5 4 35 35 H 1.09001 * 109.47244 * 54.99873 * 7 6 5 36 36 H 1.09001 * 109.47165 * 295.00516 * 7 6 5 37 37 H 0.97004 * 119.99482 * 0.02562 * 10 8 7 38 38 H 1.08992 * 109.47311 * 60.00333 * 11 10 8 39 39 H 1.08997 * 109.46828 * 299.99977 * 11 10 8 40 40 H 0.96699 * 113.99880 * 309.66135 * 13 12 11 41 41 H 1.09003 * 113.77295 * 336.35252 * 14 12 11 42 42 H 1.09004 * 113.77134 * 107.74894 * 14 12 11 43 43 H 0.96998 * 120.00656 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.77328 * 221.06020 * 24 15 14 45 45 H 1.09001 * 113.76777 * 89.66417 * 24 15 14 46 46 H 1.08996 * 113.61577 * 156.32079 * 25 4 3 47 47 H 1.09005 * 113.61110 * 25.41670 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8417 3.4321 0.6565 7 6 5.0046 4.3830 0.9463 8 6 4.7464 5.1132 2.2389 9 8 3.7322 4.8942 2.8670 10 7 5.6430 6.0089 2.6977 11 6 5.3922 6.7183 3.9547 12 6 6.5552 7.6694 4.2443 13 8 6.8369 8.5524 3.1566 14 6 7.8012 6.9689 4.8158 15 7 7.8976 8.1146 5.7410 16 6 8.9186 8.6987 6.4420 17 1 8.7217 9.5548 7.0704 18 6 10.2067 8.1905 6.3452 19 7 10.4466 7.1469 5.5799 20 14 11.5997 8.9876 7.3011 21 1 11.2994 8.9298 8.7543 22 1 12.8661 8.2617 7.0285 23 1 11.7407 10.4050 6.8809 24 6 6.4517 8.3781 5.6071 25 6 4.0050 2.0452 1.3006 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9277 0.5458 -0.3247 32 1 3.2627 3.1185 -1.4558 33 1 4.9710 2.6342 -1.0709 34 1 2.8678 3.8870 0.8373 35 1 5.0957 5.1039 0.1337 36 1 5.9290 3.8116 1.0301 37 1 6.4543 6.1838 2.1956 38 1 5.3012 5.9973 4.7670 39 1 4.4679 7.2900 3.8710 40 1 6.9318 8.1074 2.3033 41 1 7.5848 6.0219 5.3103 42 1 8.6300 6.9025 4.1109 43 1 11.3468 6.7920 5.5120 44 1 6.2029 9.4368 5.5339 45 1 5.8389 7.8451 6.3341 46 1 5.0431 1.7680 1.4832 47 1 3.3650 1.8891 2.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699919031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -56.314873 kcal Electronic energy + Delta-G solvation = -25854.738643 eV Core-core repulsion = 22040.409626 eV Total energy + Delta-G solvation = -3814.329017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.28844 -39.41211 -38.46640 -36.52796 -34.86473 -33.93202 -32.00968 -31.55848 -30.20542 -28.25964 -25.96156 -25.87782 -24.98815 -23.38220 -23.14991 -21.82399 -20.42301 -19.66534 -19.31775 -17.58586 -16.84028 -16.69281 -16.15577 -15.94353 -15.71996 -15.45757 -15.20254 -14.87317 -14.33795 -14.03849 -13.84976 -13.64782 -13.44596 -13.21306 -13.04251 -12.70546 -12.67115 -12.46177 -12.27157 -12.21085 -11.73326 -11.69590 -11.45928 -11.07580 -11.05204 -10.92172 -10.73782 -10.67704 -10.45508 -10.31285 -9.98760 -9.70257 -9.63582 -9.47716 -9.20490 -8.88541 -8.82118 -6.90394 -5.77768 -3.09361 2.75381 3.24835 3.29064 3.40307 3.43775 3.44988 4.33242 4.39524 4.43467 4.52772 4.57025 4.61931 4.75956 4.85636 4.91692 5.03310 5.04197 5.07160 5.22368 5.27141 5.30095 5.39370 5.44553 5.45542 5.54467 5.57558 5.58613 5.63390 5.78093 5.79107 5.95172 6.02454 6.08900 6.28128 6.31846 6.44234 6.55226 6.59060 7.00984 7.01493 7.16072 7.49285 7.56227 7.95614 8.12984 8.33166 9.03228 9.69535 10.55926 11.39640 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.002143 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.817784 B =13062.429222 C =13333.839861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.063 3.937 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.541 6.541 10 N -0.727 5.727 11 C 0.103 3.897 12 C 0.064 3.936 13 O -0.526 6.526 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.135 3.865 25 C -0.153 4.153 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.361 0.639 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.254 0.746 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 -13.166 -15.270 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.005 3.995 5 C -0.176 4.176 6 C -0.103 4.103 7 C -0.175 4.175 8 C 0.299 3.701 9 O -0.418 6.418 10 N -0.380 5.380 11 C -0.022 4.022 12 C 0.021 3.979 13 O -0.330 6.330 14 C 0.019 3.981 15 N -0.328 5.328 16 C -0.346 4.346 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.009 3.991 25 C -0.190 4.190 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.207 0.793 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.875 -12.657 -14.199 24.147 hybrid contribution 1.480 -0.256 0.003 1.502 sum -13.395 -12.913 -14.196 23.403 Atomic orbital electron populations 1.21748 0.93745 1.02193 1.03255 1.22518 0.95594 0.83886 0.99962 1.87908 1.19822 1.26191 1.94594 1.23001 0.81568 0.97666 0.97305 1.23297 1.01414 0.95582 0.97258 1.22234 0.99018 0.93799 0.95201 1.21730 1.00601 0.99506 0.95622 1.20669 0.83110 0.79224 0.87144 1.90697 1.27219 1.64598 1.59245 1.46002 1.23839 1.42834 1.25322 1.22010 0.99102 0.94983 0.86072 1.23739 0.94341 0.91134 0.88693 1.86619 1.93798 1.35150 1.17421 1.22885 0.93164 0.90228 0.91824 1.45652 1.01333 1.32185 1.53637 1.18955 0.85923 1.09333 1.20373 0.90169 1.24765 0.97247 0.98137 1.00358 1.69784 1.20198 1.25153 1.42032 0.86165 0.81443 0.78517 0.79429 1.21181 1.21576 1.21042 1.22559 0.88105 0.98617 0.89854 1.23512 1.01337 0.96229 0.97936 0.91887 0.91155 0.91701 0.93480 0.93340 0.91088 0.90535 0.88878 0.87834 0.88699 0.88717 0.76763 0.90450 0.91296 0.79262 0.94897 0.90427 0.93655 0.92676 0.93249 0.89433 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.37 -3.81 10.28 -35.23 -0.36 -4.17 16 4 C 0.06 0.55 4.37 -25.92 -0.11 0.44 16 5 C -0.14 -1.08 7.47 -25.92 -0.19 -1.28 16 6 C -0.08 -0.84 3.09 -89.81 -0.28 -1.11 16 7 C -0.13 -1.23 5.54 -27.89 -0.15 -1.38 16 8 C 0.51 6.75 7.83 -10.99 -0.09 6.66 16 9 O -0.54 -9.27 15.76 5.55 0.09 -9.18 16 10 N -0.73 -9.27 5.34 -60.30 -0.32 -9.59 16 11 C 0.10 1.59 5.28 -4.04 -0.02 1.57 16 12 C 0.06 1.17 1.52 -89.69 -0.14 1.03 16 13 O -0.53 -9.58 13.51 -35.23 -0.48 -10.06 16 14 C 0.14 3.31 6.92 -2.98 -0.02 3.29 16 15 N -0.60 -15.63 3.70 -177.81 -0.66 -16.29 16 16 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 19 N -0.92 -27.31 11.38 55.49 0.63 -26.68 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.14 2.82 8.34 -2.97 -0.02 2.80 16 25 C -0.15 -1.50 7.47 -25.92 -0.19 -1.70 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.10 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.10 1.30 7.68 -51.93 -0.40 0.91 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.72 7.84 -51.93 -0.41 0.31 16 37 H 0.40 4.18 7.31 -40.82 -0.30 3.88 16 38 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.36 4.84 7.61 45.56 0.35 5.19 16 41 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 42 H 0.08 1.95 7.15 -51.93 -0.37 1.57 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 46 H 0.09 0.75 7.90 -51.93 -0.41 0.34 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -35.29 384.81 -8.57 -43.86 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.40 Total: 5.38 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.85 Total: 3.63 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.35 Total: -52.56 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.75 Total: -23.41 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.29 -8.57 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699919031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.455 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds