Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46958 * 2 1 4 4 C 1.42908 * 114.00091 * 180.02562 * 3 2 1 5 5 C 1.53779 * 113.61555 * 150.00030 * 4 3 2 6 6 C 1.53781 * 87.08110 * 89.19934 * 5 4 3 7 7 C 1.52996 * 113.61504 * 139.98011 * 6 5 4 8 8 C 1.50693 * 109.47467 * 175.00134 * 7 6 5 9 9 O 1.21287 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00376 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99965 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46687 * 180.02562 * 11 10 8 13 13 O 1.42902 * 112.94314 * 53.40865 * 12 11 10 14 14 C 1.53937 * 113.74276 * 281.67199 * 12 11 10 15 15 N 1.47577 * 86.12071 * 222.04937 * 14 12 11 16 16 C 1.36931 * 134.49446 * 204.64007 * 15 14 12 17 17 H 1.08004 * 119.99907 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00170 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00325 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00277 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47185 * 59.99553 * 20 18 16 22 22 H 1.48501 * 109.47479 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46958 * 300.00078 * 20 18 16 24 24 C 1.47585 * 91.01284 * 24.64079 * 15 14 12 25 25 C 1.53779 * 113.69355 * 247.53811 * 4 3 2 26 26 H 1.08992 * 109.47253 * 59.99648 * 1 2 3 27 27 H 1.09004 * 109.46879 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47208 * 299.99643 * 1 2 3 29 29 H 1.09001 * 109.47208 * 240.00357 * 2 1 3 30 30 H 1.09002 * 109.47766 * 120.00236 * 2 1 3 31 31 H 1.09000 * 112.84390 * 18.80412 * 4 3 2 32 32 H 1.09002 * 113.61479 * 334.65678 * 5 4 3 33 33 H 1.08993 * 113.61697 * 203.75480 * 5 4 3 34 34 H 1.09000 * 113.61377 * 270.80013 * 6 5 4 35 35 H 1.09001 * 109.47244 * 54.99873 * 7 6 5 36 36 H 1.09001 * 109.47165 * 295.00516 * 7 6 5 37 37 H 0.97004 * 119.99482 * 0.02562 * 10 8 7 38 38 H 1.08992 * 109.47311 * 60.00333 * 11 10 8 39 39 H 1.08997 * 109.46828 * 299.99977 * 11 10 8 40 40 H 0.96699 * 113.99880 * 309.66135 * 13 12 11 41 41 H 1.09003 * 113.77295 * 336.35252 * 14 12 11 42 42 H 1.09004 * 113.77134 * 107.74894 * 14 12 11 43 43 H 0.96998 * 120.00656 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.77328 * 221.06020 * 24 15 14 45 45 H 1.09001 * 113.76777 * 89.66417 * 24 15 14 46 46 H 1.08996 * 113.61577 * 156.32079 * 25 4 3 47 47 H 1.09005 * 113.61110 * 25.41670 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8417 3.4321 0.6565 7 6 5.0046 4.3830 0.9463 8 6 4.7464 5.1132 2.2389 9 8 3.7322 4.8942 2.8670 10 7 5.6430 6.0089 2.6977 11 6 5.3922 6.7183 3.9547 12 6 6.5552 7.6694 4.2443 13 8 6.8369 8.5524 3.1566 14 6 7.8012 6.9689 4.8158 15 7 7.8976 8.1146 5.7410 16 6 8.9186 8.6987 6.4420 17 1 8.7217 9.5548 7.0704 18 6 10.2067 8.1905 6.3452 19 7 10.4466 7.1469 5.5799 20 14 11.5997 8.9876 7.3011 21 1 11.2994 8.9298 8.7543 22 1 12.8661 8.2617 7.0285 23 1 11.7407 10.4050 6.8809 24 6 6.4517 8.3781 5.6071 25 6 4.0050 2.0452 1.3006 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9277 0.5458 -0.3247 32 1 3.2627 3.1185 -1.4558 33 1 4.9710 2.6342 -1.0709 34 1 2.8678 3.8870 0.8373 35 1 5.0957 5.1039 0.1337 36 1 5.9290 3.8116 1.0301 37 1 6.4543 6.1838 2.1956 38 1 5.3012 5.9973 4.7670 39 1 4.4679 7.2900 3.8710 40 1 6.9318 8.1074 2.3033 41 1 7.5848 6.0219 5.3103 42 1 8.6300 6.9025 4.1109 43 1 11.3468 6.7920 5.5120 44 1 6.2029 9.4368 5.5339 45 1 5.8389 7.8451 6.3341 46 1 5.0431 1.7680 1.4832 47 1 3.3650 1.8891 2.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699919031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -83.380631 kcal Electronic energy + Delta-G solvation = -25855.912302 eV Core-core repulsion = 22040.409626 eV Total energy + Delta-G solvation = -3815.502676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29255 -40.58151 -39.71369 -37.25417 -36.46944 -35.20225 -34.01920 -32.24050 -31.11803 -29.83434 -27.56442 -26.73925 -26.57980 -24.43140 -23.72396 -23.42131 -21.48851 -20.94724 -20.37208 -18.99558 -18.43083 -17.58496 -17.28938 -17.15350 -16.68799 -16.48455 -16.37092 -16.12006 -15.76063 -15.55733 -15.19156 -14.73442 -14.61413 -14.45499 -14.06695 -13.94148 -13.81603 -13.48523 -13.25668 -13.13260 -12.98960 -12.85536 -12.80468 -12.54242 -12.32687 -12.26640 -12.11265 -11.78939 -11.74241 -11.44410 -11.41173 -10.99621 -10.96860 -10.75530 -10.70740 -10.35411 -10.09311 -8.94438 -7.91811 -5.24573 1.44889 1.48508 1.54291 1.72024 2.18637 2.46199 2.69555 3.05776 3.27674 3.34898 3.54876 3.64814 3.71255 3.87738 3.91389 3.94918 4.08787 4.19837 4.29716 4.37658 4.45126 4.49770 4.60856 4.67858 4.69713 4.76878 4.78499 4.81121 4.85688 4.93682 4.95763 4.97395 5.02429 5.16042 5.20182 5.25215 5.31483 5.35369 5.38094 5.48812 5.54161 5.91656 6.39717 6.54868 6.84786 6.91042 7.30026 7.58279 8.51958 9.24774 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.002143 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.817784 B =13062.429222 C =13333.839861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.394 6.394 4 C 0.059 3.941 5 C -0.122 4.122 6 C -0.090 4.090 7 C -0.125 4.125 8 C 0.509 3.491 9 O -0.585 6.585 10 N -0.720 5.720 11 C 0.119 3.881 12 C 0.100 3.900 13 O -0.540 6.540 14 C 0.145 3.855 15 N -0.636 5.636 16 C -0.236 4.236 17 H 0.081 0.919 18 C -0.066 4.066 19 N -0.952 5.952 20 Si 0.980 3.020 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.127 3.873 25 C -0.157 4.157 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.411 0.589 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.384 0.616 41 H 0.025 0.975 42 H 0.052 0.948 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 -13.508 -16.845 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.160 4.160 6 C -0.109 4.109 7 C -0.164 4.164 8 C 0.298 3.702 9 O -0.465 6.465 10 N -0.373 5.373 11 C -0.007 4.007 12 C 0.057 3.943 13 O -0.347 6.347 14 C 0.019 3.981 15 N -0.362 5.362 16 C -0.364 4.364 17 H 0.099 0.901 18 C -0.259 4.259 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.002 3.998 25 C -0.195 4.195 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.248 0.752 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.529 -12.994 -15.808 25.097 hybrid contribution 1.293 -0.149 0.501 1.394 sum -13.237 -13.143 -15.307 24.130 Atomic orbital electron populations 1.21773 0.93300 1.03323 1.02451 1.22700 0.96099 0.83016 1.00785 1.87883 1.20957 1.27844 1.94688 1.23137 0.81056 0.99080 0.96634 1.23280 1.02916 0.94066 0.95699 1.22153 0.97759 0.93894 0.97089 1.21787 1.01072 0.99718 0.93844 1.21434 0.82113 0.78648 0.88001 1.90689 1.29118 1.65904 1.60796 1.45911 1.24477 1.42536 1.24400 1.21647 0.97597 0.94260 0.87210 1.23101 0.92965 0.90161 0.88071 1.86570 1.93756 1.35787 1.18550 1.22824 0.94418 0.89637 0.91185 1.46042 1.03036 1.33156 1.53959 1.19341 0.87166 1.09554 1.20362 0.90118 1.25608 0.99578 0.99026 1.01715 1.69958 1.20260 1.26425 1.43412 0.85131 0.78126 0.77662 0.78264 1.20423 1.21733 1.20343 1.22800 0.85843 0.99354 0.91829 1.23578 1.01741 0.96799 0.97388 0.92081 0.89073 0.93072 0.91794 0.93251 0.88986 0.90751 0.85972 0.91278 0.85816 0.86201 0.75189 0.91428 0.90759 0.76686 0.95760 0.93005 0.94168 0.92482 0.91295 0.87795 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.73 6.50 71.98 0.47 1.20 16 3 O -0.39 -8.08 10.28 -148.98 -1.53 -9.62 16 4 C 0.06 0.94 4.37 31.12 0.14 1.08 16 5 C -0.12 -1.62 7.47 31.12 0.23 -1.38 16 6 C -0.09 -1.70 3.09 -10.27 -0.03 -1.73 16 7 C -0.12 -1.95 5.54 29.84 0.17 -1.79 16 8 C 0.51 12.75 7.83 87.65 0.69 13.44 16 9 O -0.59 -20.13 15.76 -3.05 -0.05 -20.18 16 10 N -0.72 -17.09 5.34 -463.06 -2.47 -19.56 16 11 C 0.12 3.52 5.28 86.38 0.46 3.97 16 12 C 0.10 3.57 1.52 -10.13 -0.02 3.56 16 13 O -0.54 -18.76 13.51 -148.98 -2.01 -20.77 16 14 C 0.15 6.67 6.92 86.48 0.60 7.26 16 15 N -0.64 -33.15 3.70 -720.28 -2.66 -35.82 16 16 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 17 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 19 N -0.95 -56.98 11.38 21.65 0.25 -56.73 16 20 Si 0.98 46.10 29.55 68.60 2.03 48.12 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.13 5.23 8.34 86.48 0.72 5.95 16 25 C -0.16 -2.99 7.47 31.12 0.23 -2.76 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.07 7.87 -2.39 -0.02 1.05 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 0.92 8.10 -2.39 -0.02 0.90 16 34 H 0.07 1.79 7.68 -2.39 -0.02 1.78 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.35 7.84 -2.39 -0.02 1.33 16 37 H 0.41 7.63 7.31 -92.71 -0.68 6.95 16 38 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.38 9.38 7.61 -74.06 -0.56 8.82 16 41 H 0.02 1.16 8.03 -2.39 -0.02 1.14 16 42 H 0.05 2.64 7.15 -2.39 -0.02 2.62 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.58 8.10 -2.39 -0.02 2.57 16 46 H 0.10 1.58 7.90 -2.39 -0.02 1.57 16 47 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -78.27 384.81 -0.97 -79.24 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.28 Total: 23.71 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.75 Total: 11.60 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.89 Total: -112.11 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -3.59 Total: -50.57 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -78.27 -0.97 -79.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699919031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.139 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds