Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 110.83199 * 2 1 4 4 C 1.54996 * 110.90554 * 123.65179 * 2 1 3 5 5 O 1.44382 * 103.48979 * 155.22252 * 4 2 1 6 6 C 1.43746 * 106.97403 * 319.93392 * 5 4 2 7 7 H 1.09007 * 109.87799 * 266.94550 * 6 5 4 8 8 C 1.50696 * 109.88031 * 145.93923 * 6 5 4 9 9 O 1.21281 * 120.00036 * 356.45504 * 8 6 5 10 10 N 1.34779 * 120.00299 * 176.45473 * 8 6 5 11 11 C 1.46496 * 120.00177 * 185.09931 * 10 8 6 12 12 C 1.53001 * 109.44695 * 297.89868 * 11 10 8 13 13 O 1.42906 * 109.47325 * 305.49002 * 12 11 10 14 14 C 1.53034 * 109.46164 * 57.86657 * 11 10 8 15 15 C 1.53184 * 109.34165 * 58.67148 * 14 11 10 16 16 N 1.46932 * 108.77535 * 54.62055 * 15 14 11 17 17 C 1.36930 * 120.63514 * 126.41539 * 16 15 14 18 18 H 1.07996 * 120.00024 * 209.97688 * 17 16 15 19 19 C 1.38818 * 119.99981 * 29.97083 * 17 16 15 20 20 N 1.31621 * 119.99981 * 11.85068 * 19 17 16 21 21 Si 1.86793 * 120.00132 * 191.84864 * 19 17 16 22 22 H 1.48505 * 109.47171 * 89.99960 * 21 19 17 23 23 H 1.48497 * 109.47285 * 210.00068 * 21 19 17 24 24 H 1.48504 * 109.47385 * 330.00163 * 21 19 17 25 25 C 1.46926 * 118.73741 * 306.39180 * 16 15 14 26 26 C 1.53042 * 109.43166 * 177.92286 * 11 10 8 27 27 C 1.54105 * 107.29141 * 26.51440 * 6 5 4 28 28 H 1.09003 * 109.46798 * 297.80625 * 1 2 3 29 29 H 1.08992 * 109.47183 * 57.80212 * 1 2 3 30 30 H 1.09001 * 109.47159 * 177.80902 * 1 2 3 31 31 H 1.08991 * 110.62428 * 36.71665 * 4 2 1 32 32 H 1.09000 * 110.74852 * 273.78259 * 4 2 1 33 33 H 0.97006 * 119.99735 * 5.09567 * 10 8 6 34 34 H 1.08997 * 109.46997 * 65.48629 * 12 11 10 35 35 H 1.09000 * 109.47407 * 185.48496 * 12 11 10 36 36 H 0.96693 * 113.99952 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.49915 * 298.70144 * 14 11 10 38 38 H 1.09007 * 109.49630 * 178.64236 * 14 11 10 39 39 H 1.08998 * 109.59040 * 174.40595 * 15 14 11 40 40 H 1.08996 * 109.59151 * 294.69072 * 15 14 11 41 41 H 0.97002 * 120.00134 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.59238 * 173.39701 * 25 16 15 43 43 H 1.09002 * 109.58843 * 293.68274 * 25 16 15 44 44 H 1.08999 * 109.46892 * 181.35816 * 26 11 10 45 45 H 1.08999 * 109.52735 * 61.29292 * 26 11 10 46 46 H 1.08998 * 110.48514 * 116.64554 * 27 6 5 47 47 H 1.09001 * 110.48612 * 239.29154 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0186 0.0000 4 6 2.0831 -0.8024 1.2053 5 8 3.3941 -1.2145 0.7625 6 6 3.2717 -1.5883 -0.6201 7 1 3.0850 -2.6593 -0.6993 8 6 4.5348 -1.2323 -1.3609 9 8 5.4312 -0.6510 -0.7868 10 7 4.6685 -1.5599 -2.6614 11 6 5.9370 -1.3149 -3.3519 12 6 6.2321 0.1864 -3.3579 13 8 5.1216 0.8880 -3.9208 14 6 7.0638 -2.0531 -2.6256 15 6 6.7489 -3.5518 -2.5914 16 7 6.5102 -4.0164 -3.9647 17 6 7.2065 -5.0807 -4.4721 18 1 7.4151 -5.1344 -5.5304 19 6 7.6444 -6.0905 -3.6263 20 7 7.1992 -6.1520 -2.3892 21 14 8.8653 -7.3623 -4.2437 22 1 10.2483 -6.8868 -3.9858 23 1 8.6431 -8.6474 -3.5336 24 1 8.6751 -7.5636 -5.7027 25 6 5.5098 -3.3176 -4.7831 26 6 5.8386 -1.8214 -4.7927 27 6 2.0823 -0.8013 -1.2039 28 1 -0.3633 0.4794 0.9090 29 1 -0.3633 0.5475 -0.8696 30 1 -0.3633 -1.0269 -0.0393 31 1 1.4562 -1.6704 1.4087 32 1 2.1580 -0.1689 2.0891 33 1 3.9246 -1.9580 -3.1402 34 1 6.3976 0.5282 -2.3362 35 1 7.1238 0.3792 -3.9543 36 1 5.2395 1.8470 -3.9566 37 1 7.1483 -1.6757 -1.6065 38 1 8.0040 -1.8908 -3.1528 39 1 7.5930 -4.0929 -2.1641 40 1 5.8596 -3.7246 -1.9852 41 1 7.5049 -6.8578 -1.7982 42 1 5.5365 -3.7042 -5.8018 43 1 4.5177 -3.4730 -4.3591 44 1 6.7900 -1.6613 -5.2999 45 1 5.0514 -1.2793 -5.3166 46 1 2.4208 -0.1253 -1.9891 47 1 1.3245 -1.4844 -1.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755178616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -108.997820 kcal Electronic energy + Delta-G solvation = -28353.345001 eV Core-core repulsion = 24536.731480 eV Total energy + Delta-G solvation = -3816.613521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48931 -39.18993 -37.08740 -36.08445 -34.05818 -33.62009 -32.12316 -30.89226 -29.86581 -29.31108 -26.70914 -26.45278 -23.94957 -23.70772 -22.27266 -21.10432 -20.80470 -20.16170 -18.61449 -17.53753 -17.16342 -16.53580 -16.06090 -15.92327 -15.12974 -14.99482 -14.73305 -14.29473 -14.11616 -13.98013 -13.77017 -13.40438 -13.32272 -13.14418 -13.02696 -12.62039 -12.42139 -12.25138 -11.85513 -11.69583 -11.46934 -11.38038 -11.22528 -10.96036 -10.89798 -10.85569 -10.73245 -10.34411 -10.26199 -10.06899 -9.99286 -9.79361 -9.57979 -9.53320 -8.85308 -8.50134 -8.45433 -6.62162 -5.75854 -3.23298 2.97822 3.28147 3.38596 3.45100 3.46232 4.02080 4.34680 4.48670 4.50521 4.58159 4.72887 4.87696 5.08575 5.17324 5.25216 5.34412 5.38925 5.41967 5.45881 5.52839 5.55942 5.60230 5.62632 5.70215 5.77522 5.81866 5.86667 5.97717 6.02731 6.12314 6.27953 6.36719 6.51102 6.66701 6.69173 6.73968 6.83495 6.92708 7.10293 7.42425 7.74606 7.78559 7.81204 7.98486 8.48745 8.67007 9.23903 9.85807 10.43273 11.31593 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.004158 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.893744 B = 6733.011911 C = 7565.239168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 H 0.086 0.914 4 C 0.048 3.952 5 O -0.345 6.345 6 C 0.059 3.941 7 H 0.094 0.906 8 C 0.522 3.478 9 O -0.528 6.528 10 N -0.698 5.698 11 C 0.197 3.803 12 C 0.063 3.937 13 O -0.569 6.569 14 C -0.154 4.154 15 C 0.180 3.820 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.146 3.854 26 C -0.134 4.134 27 C -0.143 4.143 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.369 0.631 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 13.816 1.463 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.104 0.896 4 C -0.029 4.029 5 O -0.263 6.263 6 C -0.002 4.002 7 H 0.112 0.888 8 C 0.307 3.693 9 O -0.404 6.404 10 N -0.350 5.350 11 C 0.111 3.889 12 C -0.016 4.016 13 O -0.373 6.373 14 C -0.194 4.194 15 C 0.055 3.945 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.173 4.173 27 C -0.181 4.181 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.214 0.786 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.383 13.439 2.081 17.735 hybrid contribution 0.371 -0.357 -0.552 0.755 sum -11.012 13.082 1.529 17.168 Atomic orbital electron populations 1.21720 0.93760 1.02254 1.02115 1.22722 0.96497 1.00416 0.94761 0.89580 1.23690 0.84423 0.97594 0.97223 1.89024 1.28537 1.86176 1.22554 1.22661 0.93770 1.00124 0.83663 0.88795 1.20149 0.88230 0.78880 0.82055 1.90610 1.41616 1.40530 1.67627 1.45753 1.15560 1.63595 1.10104 1.20292 0.84335 0.91329 0.92967 1.22797 0.87871 0.92896 0.97995 1.86449 1.42941 1.22398 1.85474 1.22601 0.96164 1.00247 1.00391 1.20683 1.00429 0.87660 0.85754 1.44053 1.41969 1.34034 1.11363 1.19189 1.28430 0.97370 0.93382 0.91773 1.25127 1.00437 0.97176 0.96729 1.69984 1.44575 1.33935 1.06252 0.86266 0.81281 0.80928 0.78095 1.21453 1.21739 1.20476 1.20884 0.91840 0.89650 0.95749 1.22264 1.02212 0.99094 0.93751 1.23026 0.96692 0.99436 0.98918 0.92274 0.92168 0.92209 0.91937 0.88864 0.76813 0.91759 0.93718 0.78557 0.90923 0.91982 0.89270 0.96470 0.93602 0.92601 0.96777 0.91016 0.91808 0.89635 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 37.16 0.34 -0.65 16 2 C -0.13 -1.20 3.72 -88.61 -0.33 -1.53 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.05 0.52 7.17 38.21 0.27 0.80 16 5 O -0.35 -5.52 10.74 -54.80 -0.59 -6.11 16 6 C 0.06 0.86 3.85 -27.31 -0.11 0.76 16 7 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 8 C 0.52 9.17 6.32 -10.99 -0.07 9.10 16 9 O -0.53 -11.00 12.83 -14.01 -0.18 -11.18 16 10 N -0.70 -11.50 3.81 -47.57 -0.18 -11.68 16 11 C 0.20 3.44 0.44 -131.78 -0.06 3.38 16 12 C 0.06 0.98 5.66 37.16 0.21 1.19 16 13 O -0.57 -7.78 12.94 -35.23 -0.46 -8.24 16 14 C -0.15 -3.18 4.63 -26.62 -0.12 -3.31 16 15 C 0.18 4.42 5.01 -3.71 -0.02 4.40 16 16 N -0.59 -14.59 2.99 -172.32 -0.52 -15.10 16 17 C -0.25 -6.91 9.59 -15.06 -0.14 -7.06 16 18 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 19 C 0.00 0.11 5.03 -17.43 -0.09 0.02 16 20 N -0.90 -26.35 11.01 55.49 0.61 -25.74 16 21 Si 0.90 21.76 29.57 -169.99 -5.03 16.74 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C 0.15 2.93 6.24 -3.71 -0.02 2.90 16 26 C -0.13 -2.29 4.86 -26.61 -0.13 -2.42 16 27 C -0.14 -1.54 6.20 -25.20 -0.16 -1.69 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 5.92 7.34 -40.82 -0.30 5.62 16 34 H 0.06 1.11 6.32 -51.93 -0.33 0.78 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.37 3.45 9.12 45.56 0.42 3.86 16 37 H 0.07 1.58 6.23 -51.93 -0.32 1.25 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 2.49 6.03 -51.93 -0.31 2.18 16 40 H 0.02 0.45 7.71 -51.93 -0.40 0.05 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 42 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.01 0.28 6.99 -51.93 -0.36 -0.08 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.06 0.99 7.81 -51.93 -0.41 0.58 16 46 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 47 H 0.08 0.75 7.83 -51.93 -0.41 0.35 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -33.24 361.60 -8.31 -41.56 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.00 Total: 8.43 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.42 Total: 5.88 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.22 Total: -25.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.24 -8.31 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755178616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.442 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds