Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 110.83199 * 2 1 4 4 C 1.54996 * 110.90554 * 123.65179 * 2 1 3 5 5 O 1.44382 * 103.48979 * 155.22252 * 4 2 1 6 6 C 1.43746 * 106.97403 * 319.93392 * 5 4 2 7 7 H 1.09007 * 109.87799 * 266.94550 * 6 5 4 8 8 C 1.50696 * 109.88031 * 145.93923 * 6 5 4 9 9 O 1.21281 * 120.00036 * 356.45504 * 8 6 5 10 10 N 1.34779 * 120.00299 * 176.45473 * 8 6 5 11 11 C 1.46496 * 120.00177 * 185.09931 * 10 8 6 12 12 C 1.53001 * 109.44695 * 297.89868 * 11 10 8 13 13 O 1.42906 * 109.47325 * 305.49002 * 12 11 10 14 14 C 1.53034 * 109.46164 * 57.86657 * 11 10 8 15 15 C 1.53184 * 109.34165 * 58.67148 * 14 11 10 16 16 N 1.46932 * 108.77535 * 54.62055 * 15 14 11 17 17 C 1.36930 * 120.63514 * 126.41539 * 16 15 14 18 18 H 1.07996 * 120.00024 * 209.97688 * 17 16 15 19 19 C 1.38818 * 119.99981 * 29.97083 * 17 16 15 20 20 N 1.31621 * 119.99981 * 11.85068 * 19 17 16 21 21 Si 1.86793 * 120.00132 * 191.84864 * 19 17 16 22 22 H 1.48505 * 109.47171 * 89.99960 * 21 19 17 23 23 H 1.48497 * 109.47285 * 210.00068 * 21 19 17 24 24 H 1.48504 * 109.47385 * 330.00163 * 21 19 17 25 25 C 1.46926 * 118.73741 * 306.39180 * 16 15 14 26 26 C 1.53042 * 109.43166 * 177.92286 * 11 10 8 27 27 C 1.54105 * 107.29141 * 26.51440 * 6 5 4 28 28 H 1.09003 * 109.46798 * 297.80625 * 1 2 3 29 29 H 1.08992 * 109.47183 * 57.80212 * 1 2 3 30 30 H 1.09001 * 109.47159 * 177.80902 * 1 2 3 31 31 H 1.08991 * 110.62428 * 36.71665 * 4 2 1 32 32 H 1.09000 * 110.74852 * 273.78259 * 4 2 1 33 33 H 0.97006 * 119.99735 * 5.09567 * 10 8 6 34 34 H 1.08997 * 109.46997 * 65.48629 * 12 11 10 35 35 H 1.09000 * 109.47407 * 185.48496 * 12 11 10 36 36 H 0.96693 * 113.99952 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.49915 * 298.70144 * 14 11 10 38 38 H 1.09007 * 109.49630 * 178.64236 * 14 11 10 39 39 H 1.08998 * 109.59040 * 174.40595 * 15 14 11 40 40 H 1.08996 * 109.59151 * 294.69072 * 15 14 11 41 41 H 0.97002 * 120.00134 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.59238 * 173.39701 * 25 16 15 43 43 H 1.09002 * 109.58843 * 293.68274 * 25 16 15 44 44 H 1.08999 * 109.46892 * 181.35816 * 26 11 10 45 45 H 1.08999 * 109.52735 * 61.29292 * 26 11 10 46 46 H 1.08998 * 110.48514 * 116.64554 * 27 6 5 47 47 H 1.09001 * 110.48612 * 239.29154 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0186 0.0000 4 6 2.0831 -0.8024 1.2053 5 8 3.3941 -1.2145 0.7625 6 6 3.2717 -1.5883 -0.6201 7 1 3.0850 -2.6593 -0.6993 8 6 4.5348 -1.2323 -1.3609 9 8 5.4312 -0.6510 -0.7868 10 7 4.6685 -1.5599 -2.6614 11 6 5.9370 -1.3149 -3.3519 12 6 6.2321 0.1864 -3.3579 13 8 5.1216 0.8880 -3.9208 14 6 7.0638 -2.0531 -2.6256 15 6 6.7489 -3.5518 -2.5914 16 7 6.5102 -4.0164 -3.9647 17 6 7.2065 -5.0807 -4.4721 18 1 7.4151 -5.1344 -5.5304 19 6 7.6444 -6.0905 -3.6263 20 7 7.1992 -6.1520 -2.3892 21 14 8.8653 -7.3623 -4.2437 22 1 10.2483 -6.8868 -3.9858 23 1 8.6431 -8.6474 -3.5336 24 1 8.6751 -7.5636 -5.7027 25 6 5.5098 -3.3176 -4.7831 26 6 5.8386 -1.8214 -4.7927 27 6 2.0823 -0.8013 -1.2039 28 1 -0.3633 0.4794 0.9090 29 1 -0.3633 0.5475 -0.8696 30 1 -0.3633 -1.0269 -0.0393 31 1 1.4562 -1.6704 1.4087 32 1 2.1580 -0.1689 2.0891 33 1 3.9246 -1.9580 -3.1402 34 1 6.3976 0.5282 -2.3362 35 1 7.1238 0.3792 -3.9543 36 1 5.2395 1.8470 -3.9566 37 1 7.1483 -1.6757 -1.6065 38 1 8.0040 -1.8908 -3.1528 39 1 7.5930 -4.0929 -2.1641 40 1 5.8596 -3.7246 -1.9852 41 1 7.5049 -6.8578 -1.7982 42 1 5.5365 -3.7042 -5.8018 43 1 4.5177 -3.4730 -4.3591 44 1 6.7900 -1.6613 -5.2999 45 1 5.0514 -1.2793 -5.3166 46 1 2.4208 -0.1253 -1.9891 47 1 1.3245 -1.4844 -1.5877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755178616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -133.468074 kcal Electronic energy + Delta-G solvation = -28354.406111 eV Core-core repulsion = 24536.731480 eV Total energy + Delta-G solvation = -3817.674631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78794 -40.37960 -38.55679 -37.41647 -35.64009 -34.55482 -33.75071 -32.49589 -31.56698 -30.54232 -28.36307 -27.18993 -25.65140 -24.88323 -23.95963 -22.66061 -21.75027 -21.46309 -20.15998 -18.97335 -18.58493 -17.97479 -17.14387 -17.03926 -16.87975 -16.30323 -16.12631 -15.76805 -15.53884 -15.15421 -15.08125 -14.93395 -14.73470 -14.50970 -14.28326 -13.84740 -13.72382 -13.35535 -13.20225 -13.05871 -13.00407 -12.70319 -12.61987 -12.49682 -12.24814 -12.19930 -12.03464 -11.83534 -11.75637 -11.68208 -11.44109 -11.27120 -11.10839 -10.83044 -10.54903 -10.21177 -9.93125 -8.63987 -7.85411 -5.35472 1.46608 1.48158 1.56695 1.64710 2.04356 2.51068 3.02043 3.26911 3.33091 3.44807 3.64364 3.71484 3.80718 3.84456 3.96676 4.02803 4.23669 4.26740 4.37838 4.47619 4.52171 4.54206 4.63680 4.65542 4.73327 4.75043 4.75749 4.82672 4.90697 4.96800 5.01994 5.09495 5.14284 5.17301 5.23131 5.31844 5.37883 5.46764 5.62597 5.65471 5.73780 5.82007 6.40636 6.66153 6.89058 7.15564 7.32872 7.86208 8.38762 9.19963 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.004158 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.893744 B = 6733.011911 C = 7565.239168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.079 0.921 4 C 0.039 3.961 5 O -0.385 6.385 6 C 0.058 3.942 7 H 0.094 0.906 8 C 0.515 3.485 9 O -0.567 6.567 10 N -0.691 5.691 11 C 0.195 3.805 12 C 0.077 3.923 13 O -0.570 6.570 14 C -0.142 4.142 15 C 0.196 3.804 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.141 3.859 26 C -0.117 4.117 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.391 0.609 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.047 0.953 40 H -0.007 1.007 41 H 0.248 0.752 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 15.059 -0.275 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 H 0.097 0.903 4 C -0.037 4.037 5 O -0.304 6.304 6 C -0.004 4.004 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.446 6.446 10 N -0.343 5.343 11 C 0.109 3.891 12 C -0.002 4.002 13 O -0.377 6.377 14 C -0.182 4.182 15 C 0.070 3.930 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.189 1.189 25 C 0.016 3.984 26 C -0.156 4.156 27 C -0.171 4.171 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.243 0.757 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.011 0.989 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.152 14.719 0.296 19.741 hybrid contribution 0.880 -0.707 0.007 1.129 sum -12.272 14.012 0.303 18.628 Atomic orbital electron populations 1.21695 0.91395 1.03033 1.03126 1.22691 0.98271 0.99466 0.93271 0.90271 1.23982 0.82834 0.98666 0.98202 1.88982 1.31581 1.86546 1.23265 1.22725 0.93580 1.00658 0.83403 0.88795 1.20778 0.88842 0.78050 0.82208 1.90586 1.43157 1.42422 1.68427 1.45688 1.15430 1.63172 1.10033 1.20202 0.83489 0.92639 0.92755 1.22436 0.88958 0.91366 0.97421 1.86376 1.42046 1.24350 1.84970 1.22355 0.97783 0.97855 1.00166 1.20291 0.97556 0.89575 0.85607 1.44248 1.43213 1.34051 1.11498 1.19560 1.28199 0.97654 0.93686 0.91156 1.25881 1.02420 0.99378 0.96936 1.70165 1.46131 1.34587 1.07454 0.85258 0.78814 0.78153 0.78155 1.21561 1.22342 1.18910 1.21077 0.91027 0.91123 0.95183 1.22106 1.03240 0.96839 0.93463 1.23034 0.95545 0.99482 0.99063 0.91190 0.91303 0.91516 0.90410 0.87859 0.75743 0.93761 0.92165 0.75978 0.92495 0.91980 0.93464 0.98890 0.94334 0.92016 0.95925 0.90939 0.88906 0.89958 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.12 -2.03 3.72 -9.49 -0.04 -2.07 16 3 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 4 C 0.04 0.81 7.17 72.66 0.52 1.33 16 5 O -0.39 -12.47 10.74 -130.27 -1.40 -13.87 16 6 C 0.06 1.67 3.85 30.22 0.12 1.78 16 7 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 8 C 0.51 18.25 6.32 87.66 0.55 18.80 16 9 O -0.57 -24.36 12.83 15.67 0.20 -24.16 16 10 N -0.69 -22.28 3.81 -422.81 -1.61 -23.89 16 11 C 0.20 6.63 0.44 3.63 0.00 6.63 16 12 C 0.08 2.27 5.66 71.98 0.41 2.68 16 13 O -0.57 -13.87 12.94 -148.98 -1.93 -15.80 16 14 C -0.14 -5.97 4.63 30.67 0.14 -5.83 16 15 C 0.20 9.93 5.01 86.36 0.43 10.36 16 16 N -0.61 -30.06 2.99 -699.11 -2.09 -32.15 16 17 C -0.26 -14.22 9.59 84.04 0.81 -13.42 16 18 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 19 C -0.05 -2.87 5.03 84.86 0.43 -2.44 16 20 N -0.94 -56.57 11.01 21.65 0.24 -56.34 16 21 Si 0.97 45.28 29.57 68.60 2.03 47.31 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.14 5.46 6.24 86.36 0.54 6.00 16 26 C -0.12 -3.73 4.86 30.67 0.15 -3.58 16 27 C -0.13 -2.62 6.20 31.59 0.20 -2.42 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.41 11.47 7.34 -92.70 -0.68 10.79 16 34 H 0.04 1.51 6.32 -2.39 -0.02 1.49 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.39 6.00 9.12 -74.06 -0.68 5.33 16 37 H 0.06 2.58 6.23 -2.39 -0.01 2.56 16 38 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.05 2.78 6.03 -2.39 -0.01 2.77 16 40 H -0.01 -0.38 7.71 -2.39 -0.02 -0.40 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 43 H 0.02 0.85 6.99 -2.39 -0.02 0.83 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.09 2.49 7.81 -2.39 -0.02 2.47 16 46 H 0.08 1.69 7.69 -2.39 -0.02 1.67 16 47 H 0.11 1.61 7.83 -2.39 -0.02 1.59 16 Total: -1.00 -74.30 361.60 -0.02 -74.32 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.38 Total: 27.59 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 4.92 Total: 16.99 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.47 Total: -112.38 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -3.13 Total: -53.82 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.30 -0.02 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755178616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.150 kcal (2) G-P(sol) polarization free energy of solvation -74.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds