Wall clock time and date at job start Fri Apr 10 2020 18:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.56763 * 2 1 4 4 C 1.54801 * 110.55231 * 237.16111 * 2 1 3 5 5 O 1.44425 * 104.80310 * 217.33510 * 4 2 1 6 6 C 1.44429 * 105.27553 * 40.58688 * 5 4 2 7 7 H 1.09006 * 110.36742 * 78.31735 * 6 5 4 8 8 C 1.50698 * 110.37251 * 200.65550 * 6 5 4 9 9 O 1.21274 * 120.00239 * 0.38457 * 8 6 5 10 10 N 1.34777 * 119.99883 * 180.38041 * 8 6 5 11 11 C 1.46499 * 120.00170 * 174.88965 * 10 8 6 12 12 C 1.53005 * 109.45924 * 302.69561 * 11 10 8 13 13 O 1.42902 * 109.47175 * 300.73299 * 12 11 10 14 14 C 1.53044 * 109.45962 * 182.72668 * 11 10 8 15 15 C 1.53156 * 109.32510 * 301.35649 * 14 11 10 16 16 N 1.46927 * 108.77021 * 305.35472 * 15 14 11 17 17 C 1.36939 * 120.63261 * 233.59067 * 16 15 14 18 18 H 1.07996 * 119.99786 * 31.71707 * 17 16 15 19 19 C 1.38815 * 119.99573 * 211.72394 * 17 16 15 20 20 N 1.31617 * 120.00557 * 11.01971 * 19 17 16 21 21 Si 1.86798 * 119.99582 * 191.03095 * 19 17 16 22 22 H 1.48500 * 109.47589 * 89.99590 * 21 19 17 23 23 H 1.48498 * 109.47230 * 210.00077 * 21 19 17 24 24 H 1.48511 * 109.47162 * 329.99592 * 21 19 17 25 25 C 1.46921 * 118.73586 * 53.61134 * 16 15 14 26 26 C 1.53032 * 109.45881 * 62.66969 * 11 10 8 27 27 C 1.54480 * 104.80145 * 319.48973 * 6 5 4 28 28 H 1.08998 * 109.47173 * 297.32144 * 1 2 3 29 29 H 1.08999 * 109.47312 * 57.32133 * 1 2 3 30 30 H 1.09004 * 109.47050 * 177.32282 * 1 2 3 31 31 H 1.09004 * 110.30593 * 98.54179 * 4 2 1 32 32 H 1.08990 * 110.53247 * 336.24706 * 4 2 1 33 33 H 0.97008 * 119.99788 * 354.89470 * 10 8 6 34 34 H 1.09006 * 109.46858 * 60.72973 * 12 11 10 35 35 H 1.08999 * 109.47203 * 180.72991 * 12 11 10 36 36 H 0.96700 * 114.00019 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.49857 * 61.29821 * 14 11 10 38 38 H 1.09002 * 109.49398 * 181.39139 * 14 11 10 39 39 H 1.08999 * 109.58759 * 185.57258 * 15 14 11 40 40 H 1.09002 * 109.71077 * 65.21164 * 15 14 11 41 41 H 0.96996 * 120.00087 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.59165 * 186.60448 * 25 16 15 43 43 H 1.09004 * 109.59052 * 66.17843 * 25 16 15 44 44 H 1.09004 * 109.49713 * 178.61265 * 26 11 10 45 45 H 1.09001 * 109.49581 * 298.66779 * 26 11 10 46 46 H 1.09005 * 110.50968 * 142.61943 * 27 6 5 47 47 H 1.08997 * 110.50980 * 265.18868 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0204 0.0000 4 6 2.0734 -0.7860 -1.2179 5 8 3.2425 -1.4735 -0.7215 6 6 2.8779 -1.9423 0.5951 7 1 2.2598 -2.8372 0.5215 8 6 4.1124 -2.2217 1.4130 9 8 5.2114 -2.0362 0.9349 10 7 3.9951 -2.6777 2.6758 11 6 5.1914 -3.0556 3.4323 12 6 5.9595 -4.1343 2.6659 13 8 5.1186 -5.2741 2.4765 14 6 4.7780 -3.5998 4.8017 15 6 3.9798 -2.5297 5.5523 16 7 4.7778 -1.2974 5.6089 17 6 5.0275 -0.6821 6.8066 18 1 5.1190 -1.2709 7.7073 19 6 5.1629 0.6983 6.8627 20 7 4.8403 1.4342 5.8203 21 14 5.8032 1.5113 8.4178 22 1 7.2828 1.6179 8.3476 23 1 5.2147 2.8687 8.5451 24 1 5.4213 0.6936 9.5972 25 6 5.3024 -0.7374 4.3560 26 6 6.0858 -1.8279 3.6184 27 6 2.0714 -0.7813 1.2180 28 1 -0.3633 0.4717 0.9130 29 1 -0.3634 0.5549 -0.8650 30 1 -0.3633 -1.0266 -0.0480 31 1 2.3484 -0.0998 -2.0189 32 1 1.3329 -1.5034 -1.5712 33 1 3.1185 -2.7558 3.0839 34 1 6.2648 -3.7428 1.6955 35 1 6.8428 -4.4249 3.2347 36 1 5.5414 -5.9995 1.9967 37 1 4.1602 -4.4879 4.6688 38 1 5.6687 -3.8580 5.3745 39 1 3.7680 -2.8746 6.5644 40 1 3.0435 -2.3350 5.0293 41 1 4.9353 2.3987 5.8595 42 1 5.9634 0.1002 4.5785 43 1 4.4751 -0.3972 3.7330 44 1 6.9642 -2.1028 4.2024 45 1 6.3994 -1.4550 2.6434 46 1 1.2490 -1.1676 1.8202 47 1 2.7200 -0.1464 1.8216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755178617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:28 Heat of formation + Delta-G solvation = -109.962912 kcal Electronic energy + Delta-G solvation = -28456.264709 eV Core-core repulsion = 24639.609339 eV Total energy + Delta-G solvation = -3816.655370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46664 -39.18757 -37.13739 -36.08915 -34.05521 -33.55070 -32.11151 -30.86806 -29.87494 -29.25289 -26.69482 -26.35480 -24.05194 -23.76461 -22.26599 -21.13881 -20.61019 -20.14338 -18.62475 -17.56300 -17.15213 -16.59255 -16.08685 -15.67910 -15.13329 -14.96262 -14.85578 -14.38210 -14.10849 -13.84226 -13.67007 -13.43359 -13.23638 -13.13650 -13.04488 -12.64990 -12.49867 -12.25052 -11.85056 -11.62909 -11.40518 -11.26834 -11.23182 -10.92154 -10.87202 -10.75621 -10.69646 -10.35706 -10.26526 -10.03982 -9.94174 -9.85958 -9.63451 -9.54283 -8.91230 -8.52072 -8.46927 -6.60741 -5.77826 -3.26407 2.97158 3.20394 3.37279 3.44024 3.44824 4.11143 4.45474 4.46853 4.49184 4.66601 4.80220 4.92542 5.08085 5.18907 5.29841 5.33781 5.39986 5.43809 5.48674 5.55037 5.56363 5.66552 5.68921 5.74398 5.79377 5.92668 5.96170 6.05772 6.11625 6.14423 6.26816 6.36709 6.52748 6.64685 6.69560 6.70487 6.82344 6.92224 7.09063 7.40942 7.72319 7.78674 7.79942 7.95481 8.48235 8.63311 9.22890 9.84181 10.42688 11.29753 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.004972 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.633615 B = 5629.742922 C = 7121.718158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 H 0.087 0.913 4 C 0.046 3.954 5 O -0.345 6.345 6 C 0.059 3.941 7 H 0.089 0.911 8 C 0.525 3.475 9 O -0.526 6.526 10 N -0.698 5.698 11 C 0.196 3.804 12 C 0.061 3.939 13 O -0.569 6.569 14 C -0.133 4.133 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.183 3.817 26 C -0.154 4.154 27 C -0.143 4.143 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.370 0.630 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -8.629 -10.971 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 H 0.105 0.895 4 C -0.031 4.031 5 O -0.263 6.263 6 C -0.002 4.002 7 H 0.107 0.893 8 C 0.310 3.690 9 O -0.403 6.403 10 N -0.350 5.350 11 C 0.111 3.889 12 C -0.018 4.018 13 O -0.373 6.373 14 C -0.173 4.173 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.081 0.919 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.057 3.943 26 C -0.194 4.194 27 C -0.181 4.181 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.216 0.784 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.187 -7.960 -11.095 14.991 hybrid contribution 0.125 0.161 0.757 0.784 sum -6.062 -7.799 -10.337 14.298 Atomic orbital electron populations 1.21812 0.93945 1.01978 1.02277 1.22575 0.96505 1.00798 0.94514 0.89464 1.23627 0.87935 0.94959 0.96588 1.89258 1.34711 1.73730 1.28583 1.22856 0.94308 0.98220 0.84809 0.89317 1.19950 0.90093 0.76948 0.82020 1.90624 1.27343 1.51005 1.71281 1.45780 1.10245 1.65839 1.13138 1.20291 0.85176 0.93102 0.90353 1.22776 0.92457 0.86037 1.00509 1.86458 1.43356 1.27538 1.79983 1.22238 1.01852 0.98984 0.94181 1.20890 0.92165 0.87448 0.97647 1.44036 1.57817 1.25766 1.03767 1.19168 1.43450 0.89023 0.86776 0.91884 1.25160 1.00310 0.96582 0.97244 1.69977 1.50462 1.04660 1.29564 0.86281 0.78654 0.78723 0.82998 1.21437 1.21744 1.20446 1.20647 0.95504 0.93009 0.85139 1.22620 0.98554 0.96614 1.01606 1.23029 1.00173 0.96662 0.98268 0.91921 0.92406 0.92439 0.88947 0.92142 0.76689 0.91702 0.93473 0.78441 0.91687 0.91005 0.92570 0.96833 0.93642 0.89622 0.96401 0.92093 0.90856 0.89615 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.98 37.16 0.33 -0.87 16 2 C -0.13 -1.36 3.73 -88.88 -0.33 -1.69 16 3 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.05 0.51 7.19 38.11 0.27 0.79 16 5 O -0.35 -5.40 10.91 -54.45 -0.59 -5.99 16 6 C 0.06 0.85 3.71 -27.11 -0.10 0.74 16 7 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 8 C 0.53 9.14 6.49 -10.99 -0.07 9.06 16 9 O -0.53 -10.95 12.80 -13.66 -0.17 -11.12 16 10 N -0.70 -11.46 3.96 -47.57 -0.19 -11.65 16 11 C 0.20 3.43 0.44 -131.78 -0.06 3.37 16 12 C 0.06 0.95 5.68 37.16 0.21 1.16 16 13 O -0.57 -7.92 12.84 -35.23 -0.45 -8.37 16 14 C -0.13 -2.28 4.84 -26.63 -0.13 -2.41 16 15 C 0.15 2.90 6.24 -3.73 -0.02 2.87 16 16 N -0.59 -14.38 2.98 -172.34 -0.51 -14.90 16 17 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 18 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 19 C 0.01 0.16 5.04 -17.43 -0.09 0.08 16 20 N -0.90 -25.96 11.10 55.49 0.62 -25.34 16 21 Si 0.90 21.58 29.57 -169.99 -5.03 16.56 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.18 4.39 4.99 -3.72 -0.02 4.37 16 26 C -0.15 -3.15 4.71 -26.62 -0.13 -3.27 16 27 C -0.14 -1.84 6.25 -25.16 -0.16 -2.00 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 33 H 0.40 5.96 7.20 -40.82 -0.29 5.66 16 34 H 0.06 1.12 6.17 -51.93 -0.32 0.80 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.37 3.51 9.12 45.56 0.42 3.92 16 37 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 40 H 0.01 0.27 6.90 -51.93 -0.36 -0.09 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.09 2.36 6.14 -51.93 -0.32 2.04 16 43 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.07 1.57 6.23 -51.93 -0.32 1.25 16 46 H 0.09 0.93 7.73 -51.93 -0.40 0.53 16 47 H 0.09 1.40 7.86 -51.93 -0.41 1.00 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -32.70 361.26 -8.30 -41.00 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.98 Total: 9.18 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.43 Total: 5.20 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.09 Total: -51.89 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.22 Total: -25.49 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.70 -8.30 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755178617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.962 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds