Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.56763 * 2 1 4 4 C 1.54801 * 110.55231 * 237.16111 * 2 1 3 5 5 O 1.44425 * 104.80310 * 217.33510 * 4 2 1 6 6 C 1.44429 * 105.27553 * 40.58688 * 5 4 2 7 7 H 1.09006 * 110.36742 * 78.31735 * 6 5 4 8 8 C 1.50698 * 110.37251 * 200.65550 * 6 5 4 9 9 O 1.21274 * 120.00239 * 0.38457 * 8 6 5 10 10 N 1.34777 * 119.99883 * 180.38041 * 8 6 5 11 11 C 1.46499 * 120.00170 * 174.88965 * 10 8 6 12 12 C 1.53005 * 109.45924 * 302.69561 * 11 10 8 13 13 O 1.42902 * 109.47175 * 300.73299 * 12 11 10 14 14 C 1.53044 * 109.45962 * 182.72668 * 11 10 8 15 15 C 1.53156 * 109.32510 * 301.35649 * 14 11 10 16 16 N 1.46927 * 108.77021 * 305.35472 * 15 14 11 17 17 C 1.36939 * 120.63261 * 233.59067 * 16 15 14 18 18 H 1.07996 * 119.99786 * 31.71707 * 17 16 15 19 19 C 1.38815 * 119.99573 * 211.72394 * 17 16 15 20 20 N 1.31617 * 120.00557 * 11.01971 * 19 17 16 21 21 Si 1.86798 * 119.99582 * 191.03095 * 19 17 16 22 22 H 1.48500 * 109.47589 * 89.99590 * 21 19 17 23 23 H 1.48498 * 109.47230 * 210.00077 * 21 19 17 24 24 H 1.48511 * 109.47162 * 329.99592 * 21 19 17 25 25 C 1.46921 * 118.73586 * 53.61134 * 16 15 14 26 26 C 1.53032 * 109.45881 * 62.66969 * 11 10 8 27 27 C 1.54480 * 104.80145 * 319.48973 * 6 5 4 28 28 H 1.08998 * 109.47173 * 297.32144 * 1 2 3 29 29 H 1.08999 * 109.47312 * 57.32133 * 1 2 3 30 30 H 1.09004 * 109.47050 * 177.32282 * 1 2 3 31 31 H 1.09004 * 110.30593 * 98.54179 * 4 2 1 32 32 H 1.08990 * 110.53247 * 336.24706 * 4 2 1 33 33 H 0.97008 * 119.99788 * 354.89470 * 10 8 6 34 34 H 1.09006 * 109.46858 * 60.72973 * 12 11 10 35 35 H 1.08999 * 109.47203 * 180.72991 * 12 11 10 36 36 H 0.96700 * 114.00019 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.49857 * 61.29821 * 14 11 10 38 38 H 1.09002 * 109.49398 * 181.39139 * 14 11 10 39 39 H 1.08999 * 109.58759 * 185.57258 * 15 14 11 40 40 H 1.09002 * 109.71077 * 65.21164 * 15 14 11 41 41 H 0.96996 * 120.00087 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.59165 * 186.60448 * 25 16 15 43 43 H 1.09004 * 109.59052 * 66.17843 * 25 16 15 44 44 H 1.09004 * 109.49713 * 178.61265 * 26 11 10 45 45 H 1.09001 * 109.49581 * 298.66779 * 26 11 10 46 46 H 1.09005 * 110.50968 * 142.61943 * 27 6 5 47 47 H 1.08997 * 110.50980 * 265.18868 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0204 0.0000 4 6 2.0734 -0.7860 -1.2179 5 8 3.2425 -1.4735 -0.7215 6 6 2.8779 -1.9423 0.5951 7 1 2.2598 -2.8372 0.5215 8 6 4.1124 -2.2217 1.4130 9 8 5.2114 -2.0362 0.9349 10 7 3.9951 -2.6777 2.6758 11 6 5.1914 -3.0556 3.4323 12 6 5.9595 -4.1343 2.6659 13 8 5.1186 -5.2741 2.4765 14 6 4.7780 -3.5998 4.8017 15 6 3.9798 -2.5297 5.5523 16 7 4.7778 -1.2974 5.6089 17 6 5.0275 -0.6821 6.8066 18 1 5.1190 -1.2709 7.7073 19 6 5.1629 0.6983 6.8627 20 7 4.8403 1.4342 5.8203 21 14 5.8032 1.5113 8.4178 22 1 7.2828 1.6179 8.3476 23 1 5.2147 2.8687 8.5451 24 1 5.4213 0.6936 9.5972 25 6 5.3024 -0.7374 4.3560 26 6 6.0858 -1.8279 3.6184 27 6 2.0714 -0.7813 1.2180 28 1 -0.3633 0.4717 0.9130 29 1 -0.3634 0.5549 -0.8650 30 1 -0.3633 -1.0266 -0.0480 31 1 2.3484 -0.0998 -2.0189 32 1 1.3329 -1.5034 -1.5712 33 1 3.1185 -2.7558 3.0839 34 1 6.2648 -3.7428 1.6955 35 1 6.8428 -4.4249 3.2347 36 1 5.5414 -5.9995 1.9967 37 1 4.1602 -4.4879 4.6688 38 1 5.6687 -3.8580 5.3745 39 1 3.7680 -2.8746 6.5644 40 1 3.0435 -2.3350 5.0293 41 1 4.9353 2.3987 5.8595 42 1 5.9634 0.1002 4.5785 43 1 4.4751 -0.3972 3.7330 44 1 6.9642 -2.1028 4.2024 45 1 6.3994 -1.4550 2.6434 46 1 1.2490 -1.1676 1.8202 47 1 2.7200 -0.1464 1.8216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755178617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = -133.982613 kcal Electronic energy + Delta-G solvation = -28457.306281 eV Core-core repulsion = 24639.609339 eV Total energy + Delta-G solvation = -3817.696943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77939 -40.38076 -38.60975 -37.42227 -35.64615 -34.54275 -33.75126 -32.47431 -31.56331 -30.51219 -28.35202 -27.15083 -25.67095 -25.04732 -23.94686 -22.69381 -21.73722 -21.37069 -20.16458 -18.97348 -18.60830 -18.02132 -17.19493 -16.88988 -16.80068 -16.34615 -16.12315 -15.91346 -15.48884 -15.15633 -15.09416 -14.95695 -14.72291 -14.39213 -14.23493 -14.01644 -13.81473 -13.36622 -13.19336 -13.17919 -12.98019 -12.67864 -12.63980 -12.48347 -12.21626 -12.17801 -12.02963 -11.85065 -11.76456 -11.64062 -11.43459 -11.28165 -11.02628 -10.89001 -10.55034 -10.28972 -9.95306 -8.60877 -7.85496 -5.36814 1.46331 1.47901 1.56221 1.63917 1.97386 2.50800 3.07047 3.25732 3.32282 3.43041 3.65576 3.71798 3.83395 3.86183 3.99380 4.00866 4.18301 4.25064 4.28135 4.47975 4.51913 4.52438 4.63043 4.64673 4.71946 4.74577 4.75940 4.84721 4.87607 4.97329 5.02035 5.11160 5.17034 5.17775 5.21754 5.32549 5.35213 5.46581 5.61704 5.65553 5.71743 5.77930 6.41637 6.63631 6.88620 7.16401 7.30190 7.86290 8.39754 9.19747 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.004972 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.633615 B = 5629.742922 C = 7121.718158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 H 0.073 0.927 4 C 0.043 3.957 5 O -0.381 6.381 6 C 0.064 3.936 7 H 0.122 0.878 8 C 0.517 3.483 9 O -0.567 6.567 10 N -0.691 5.691 11 C 0.195 3.805 12 C 0.074 3.926 13 O -0.572 6.572 14 C -0.117 4.117 15 C 0.141 3.859 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.068 0.932 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.198 3.802 26 C -0.142 4.142 27 C -0.140 4.140 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.407 0.593 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.247 0.753 42 H 0.043 0.957 43 H -0.004 1.004 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -10.800 -10.977 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 H 0.092 0.908 4 C -0.033 4.033 5 O -0.299 6.299 6 C 0.003 3.997 7 H 0.139 0.861 8 C 0.304 3.696 9 O -0.446 6.446 10 N -0.343 5.343 11 C 0.109 3.891 12 C -0.004 4.004 13 O -0.379 6.379 14 C -0.156 4.156 15 C 0.016 3.984 16 N -0.329 5.329 17 C -0.392 4.392 18 H 0.086 0.914 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.190 1.190 25 C 0.072 3.928 26 C -0.182 4.182 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.014 0.986 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.779 -10.186 -11.093 16.951 hybrid contribution 0.602 0.812 0.729 1.246 sum -7.177 -9.375 -10.364 15.710 Atomic orbital electron populations 1.21780 0.91541 1.03215 1.02842 1.22567 0.98391 0.99698 0.93487 0.90846 1.23871 0.87270 0.95545 0.96603 1.89222 1.37201 1.74445 1.29076 1.22932 0.92872 0.99753 0.84130 0.86072 1.20620 0.90756 0.75985 0.82258 1.90602 1.29152 1.52677 1.72169 1.45721 1.10325 1.65382 1.12919 1.20200 0.85209 0.92284 0.91403 1.22430 0.92541 0.86154 0.99313 1.86384 1.43414 1.27599 1.80481 1.22079 1.01774 0.98642 0.93095 1.21071 0.92408 0.86230 0.98687 1.44219 1.58870 1.26916 1.02918 1.19518 1.42492 0.89368 0.87779 0.91389 1.25897 1.01164 0.97303 0.99990 1.70152 1.52087 1.04340 1.31488 0.85289 0.77642 0.77468 0.80157 1.21589 1.22308 1.18957 1.20258 0.94190 0.92991 0.85316 1.22379 0.98675 0.97102 1.00001 1.23003 0.99953 0.96003 0.98861 0.92244 0.90920 0.90919 0.88067 0.89393 0.75695 0.93594 0.92063 0.75844 0.88973 0.91016 0.92066 0.95892 0.94357 0.93861 0.98590 0.92160 0.92381 0.87296 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.98 71.98 0.65 -1.32 16 2 C -0.12 -2.54 3.73 -9.67 -0.04 -2.58 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.04 0.89 7.19 72.60 0.52 1.41 16 5 O -0.38 -11.70 10.91 -130.61 -1.43 -13.12 16 6 C 0.06 1.76 3.71 30.35 0.11 1.87 16 7 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 8 C 0.52 18.03 6.49 87.66 0.57 18.60 16 9 O -0.57 -24.24 12.80 15.36 0.20 -24.04 16 10 N -0.69 -22.19 3.96 -422.81 -1.67 -23.86 16 11 C 0.20 6.62 0.44 3.63 0.00 6.63 16 12 C 0.07 2.21 5.68 71.98 0.41 2.62 16 13 O -0.57 -14.10 12.84 -148.98 -1.91 -16.01 16 14 C -0.12 -3.73 4.84 30.66 0.15 -3.58 16 15 C 0.14 5.45 6.24 86.35 0.54 5.98 16 16 N -0.61 -29.74 2.98 -699.17 -2.09 -31.82 16 17 C -0.26 -14.16 9.58 84.03 0.80 -13.35 16 18 H 0.07 3.56 7.85 -2.91 -0.02 3.54 16 19 C -0.05 -2.68 5.04 84.86 0.43 -2.25 16 20 N -0.93 -55.77 11.10 21.65 0.24 -55.53 16 21 Si 0.97 44.98 29.57 68.60 2.03 47.01 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.20 9.94 4.99 86.36 0.43 10.37 16 26 C -0.14 -5.93 4.71 30.67 0.14 -5.79 16 27 C -0.14 -3.54 6.25 31.61 0.20 -3.34 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.33 7.84 -2.39 -0.02 1.31 16 33 H 0.41 11.53 7.20 -92.70 -0.67 10.86 16 34 H 0.05 1.57 6.17 -2.38 -0.01 1.55 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.39 6.10 9.12 -74.06 -0.68 5.43 16 37 H 0.09 2.52 7.66 -2.39 -0.02 2.50 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 40 H 0.02 0.86 6.90 -2.39 -0.02 0.84 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.04 2.52 6.14 -2.39 -0.01 2.50 16 43 H 0.00 -0.21 7.74 -2.38 -0.02 -0.23 16 44 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.06 2.61 6.23 -2.39 -0.01 2.59 16 46 H 0.11 2.18 7.73 -2.38 -0.02 2.16 16 47 H 0.05 1.62 7.86 -2.39 -0.02 1.60 16 Total: -1.00 -73.31 361.26 -0.08 -73.38 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.36 Total: 28.73 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 4.92 Total: 15.27 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.52 Total: -111.21 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -3.14 Total: -53.18 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.31 -0.08 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755178617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.598 kcal (2) G-P(sol) polarization free energy of solvation -73.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds