Wall clock time and date at job start Fri Apr 10 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86980 * 2 1 4 4 O 1.43740 * 110.00855 * 238.90587 * 2 1 3 5 5 C 1.44382 * 106.97346 * 267.02399 * 4 2 1 6 6 C 1.54994 * 103.49096 * 319.93382 * 5 4 2 7 7 C 1.54102 * 109.87662 * 120.99823 * 2 1 3 8 8 H 1.09000 * 110.48585 * 358.73547 * 7 2 1 9 9 C 1.50698 * 110.48780 * 236.22423 * 7 2 1 10 10 O 1.21274 * 120.00185 * 359.97438 * 9 7 2 11 11 N 1.34787 * 119.99801 * 180.02562 * 9 7 2 12 12 C 1.46496 * 119.99571 * 185.05521 * 11 9 7 13 13 C 1.53000 * 109.46009 * 57.25984 * 12 11 9 14 14 O 1.42897 * 109.47294 * 54.80411 * 13 12 11 15 15 C 1.53047 * 109.45610 * 177.22730 * 12 11 9 16 16 C 1.53190 * 109.31152 * 58.62800 * 15 12 11 17 17 N 1.46926 * 108.76270 * 54.65879 * 16 15 12 18 18 C 1.36937 * 120.63179 * 126.36139 * 17 16 15 19 19 H 1.07996 * 120.00658 * 210.57732 * 18 17 16 20 20 C 1.38817 * 120.00155 * 30.57662 * 18 17 16 21 21 N 1.31619 * 119.99708 * 11.46668 * 20 18 17 22 22 Si 1.86795 * 120.00247 * 191.46871 * 20 18 17 23 23 H 1.48501 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47264 * 119.99753 * 22 20 18 25 25 H 1.48496 * 109.47247 * 239.99873 * 22 20 18 26 26 C 1.46919 * 118.73901 * 306.37925 * 17 16 15 27 27 C 1.53038 * 109.46449 * 297.27843 * 12 11 9 28 28 H 1.09002 * 109.47683 * 299.00582 * 1 2 3 29 29 H 1.09000 * 109.46615 * 58.99896 * 1 2 3 30 30 H 1.08996 * 109.47345 * 178.99670 * 1 2 3 31 31 H 1.09002 * 110.62176 * 78.44212 * 5 4 2 32 32 H 1.09000 * 110.61155 * 201.27864 * 5 4 2 33 33 H 1.08998 * 110.90789 * 278.82784 * 6 5 4 34 34 H 1.09000 * 110.90831 * 155.22200 * 6 5 4 35 35 H 0.97000 * 119.99677 * 5.05764 * 11 9 7 36 36 H 1.08997 * 109.46507 * 294.79991 * 13 12 11 37 37 H 1.08999 * 109.46900 * 174.80625 * 13 12 11 38 38 H 0.96708 * 113.99550 * 180.02562 * 14 13 12 39 39 H 1.08993 * 109.49724 * 178.59734 * 15 12 11 40 40 H 1.09002 * 109.49787 * 298.69241 * 15 12 11 41 41 H 1.08996 * 109.60216 * 294.87079 * 16 15 12 42 42 H 1.09001 * 109.58299 * 174.43273 * 16 15 12 43 43 H 0.97005 * 120.00400 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.58610 * 293.82183 * 26 17 16 45 45 H 1.09004 * 109.58784 * 173.39976 * 26 17 16 46 46 H 1.09003 * 109.49544 * 61.31334 * 27 12 11 47 47 H 1.08994 * 109.49880 * 181.41018 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0218 -0.6975 -1.1566 5 6 2.2334 -2.0703 -0.7625 6 6 2.8357 -1.9493 0.6605 7 6 2.0539 -0.7464 1.2422 8 1 1.2236 -1.0906 1.8589 9 6 2.9713 0.1414 2.0430 10 8 3.1985 1.2727 1.6697 11 7 3.5401 -0.3223 3.1736 12 6 4.3422 0.5734 4.0105 13 6 3.4939 1.7761 4.4288 14 8 2.2976 1.3180 5.0619 15 6 4.8110 -0.1785 5.2584 16 6 5.6305 -1.4015 4.8349 17 7 6.7192 -0.9586 3.9532 18 6 8.0186 -1.2923 4.2273 19 1 8.8195 -0.6288 3.9364 20 6 8.3066 -2.4836 4.8792 21 7 7.3679 -3.3932 5.0330 22 14 10.0264 -2.7957 5.5381 23 1 10.8912 -1.6263 5.2381 24 1 9.9638 -3.0016 7.0075 25 1 10.5917 -4.0074 4.8921 26 6 6.3871 -0.1506 2.7719 27 6 5.5587 1.0582 3.2184 28 1 -0.3634 0.4983 0.8987 29 1 -0.3632 0.5293 -0.8809 30 1 -0.3634 -1.0275 -0.0180 31 1 1.2878 -2.6118 -0.7344 32 1 2.9346 -2.5598 -1.4384 33 1 3.9031 -1.7337 0.6140 34 1 2.6475 -2.8527 1.2406 35 1 3.4183 -1.2490 3.4330 36 1 3.2367 2.3633 3.5473 37 1 4.0595 2.3950 5.1252 38 1 1.7101 2.0286 5.3536 39 1 5.4285 0.4798 5.8693 40 1 3.9444 -0.5032 5.8344 41 1 4.9904 -2.1036 4.3008 42 1 6.0491 -1.8844 5.7180 43 1 7.5689 -4.2255 5.4889 44 1 5.8085 -0.7507 2.0695 45 1 7.3048 0.1919 2.2937 46 1 5.2244 1.6139 2.3423 47 1 6.1692 1.7047 3.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755180719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:38 Heat of formation + Delta-G solvation = -111.940298 kcal Electronic energy + Delta-G solvation = -28551.633667 eV Core-core repulsion = 24734.892551 eV Total energy + Delta-G solvation = -3816.741116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66185 -39.22108 -37.25878 -36.12554 -34.05856 -32.77846 -31.75091 -31.22104 -30.21399 -29.85450 -26.91691 -26.60890 -23.90216 -22.68179 -22.27076 -21.78693 -20.80411 -19.84689 -18.70555 -17.64425 -17.13605 -16.75187 -16.22814 -15.83161 -15.11058 -14.83994 -14.70686 -14.55175 -14.17772 -13.95867 -13.53512 -13.43946 -13.31463 -13.07997 -12.77722 -12.74189 -12.46507 -12.05332 -11.91503 -11.77698 -11.50243 -11.41010 -11.24590 -10.98795 -10.94656 -10.88085 -10.77392 -10.41175 -10.29884 -10.04545 -9.84404 -9.79527 -9.65014 -9.59938 -9.03504 -8.60210 -8.49715 -6.64903 -5.81530 -3.27778 2.89869 3.34584 3.42434 3.43140 3.44758 3.84391 4.42362 4.47257 4.48045 4.69834 4.74464 5.05686 5.09221 5.21339 5.30483 5.31294 5.37431 5.45468 5.48572 5.50844 5.53963 5.62870 5.67488 5.73494 5.80560 5.95332 5.97650 6.00869 6.08992 6.16940 6.28972 6.31552 6.57079 6.57741 6.64869 6.80304 6.87639 6.92909 7.04873 7.28341 7.60590 7.75969 7.76722 7.92269 8.44537 8.54108 9.19799 9.81424 10.39334 11.26586 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.004396 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.779349 B = 6367.236285 C = 7332.497808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.370 6.370 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.142 4.142 8 H 0.106 0.894 9 C 0.530 3.470 10 O -0.547 6.547 11 N -0.695 5.695 12 C 0.193 3.807 13 C 0.063 3.937 14 O -0.567 6.567 15 C -0.143 4.143 16 C 0.173 3.827 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.906 5.906 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.154 3.846 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.092 0.908 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 5.282 -4.639 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.134 0.866 4 O -0.289 6.289 5 C -0.029 4.029 6 C -0.184 4.184 7 C -0.163 4.163 8 H 0.124 0.876 9 C 0.315 3.685 10 O -0.425 6.425 11 N -0.345 5.345 12 C 0.107 3.893 13 C -0.015 4.015 14 O -0.371 6.371 15 C -0.183 4.183 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.027 3.973 27 C -0.184 4.184 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.215 0.785 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.408 5.430 -5.138 15.352 hybrid contribution 0.491 -0.310 0.981 1.140 sum -12.918 5.120 -4.157 14.504 Atomic orbital electron populations 1.22265 0.95546 1.02188 1.02517 1.22756 0.93451 0.98403 0.83045 0.86585 1.88926 1.85959 1.20698 1.33286 1.23535 0.99647 0.84659 0.95087 1.23152 1.01393 0.97216 0.96614 1.22743 0.98954 0.96618 0.98002 0.87567 1.20042 0.80249 0.87493 0.80684 1.90573 1.62593 1.20069 1.69306 1.45896 1.51012 1.14375 1.23188 1.20299 0.89155 0.88715 0.91096 1.22734 0.85896 0.96641 0.96260 1.86482 1.33292 1.37023 1.80293 1.22474 1.00021 1.00804 0.94981 1.20772 0.88119 0.90499 0.95918 1.44035 1.03525 1.60644 1.23208 1.19244 0.83598 1.00326 1.34808 0.91776 1.25114 0.97407 0.95051 1.01904 1.69970 1.32258 1.07127 1.45732 0.86202 0.84233 0.77796 0.78425 1.20272 1.21603 1.21692 1.20795 0.96194 0.90570 0.89717 1.22395 0.95505 1.00155 1.00351 0.91563 0.91772 0.92518 0.92225 0.88758 0.89481 0.89297 0.76287 0.91943 0.93580 0.78486 0.91382 0.91968 0.96666 0.89029 0.93707 0.96603 0.92905 0.90674 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.31 37.16 0.35 -1.34 16 2 C 0.08 1.04 3.70 -26.16 -0.10 0.95 16 3 H 0.12 1.72 6.44 -51.93 -0.33 1.39 16 4 O -0.37 -5.14 11.20 -35.23 -0.39 -5.53 16 5 C 0.05 0.53 7.67 38.21 0.29 0.82 16 6 C -0.15 -1.74 6.69 -24.72 -0.17 -1.90 16 7 C -0.14 -1.77 3.07 -90.24 -0.28 -2.04 16 8 H 0.11 1.13 7.70 -51.93 -0.40 0.73 16 9 C 0.53 8.21 6.43 -10.98 -0.07 8.14 16 10 O -0.55 -9.74 11.56 5.56 0.06 -9.68 16 11 N -0.69 -11.02 3.87 -47.57 -0.18 -11.21 16 12 C 0.19 3.28 0.44 -131.78 -0.06 3.22 16 13 C 0.06 0.95 5.59 37.16 0.21 1.16 16 14 O -0.57 -7.81 12.94 -35.23 -0.46 -8.26 16 15 C -0.14 -2.65 4.88 -26.61 -0.13 -2.78 16 16 C 0.17 3.89 4.99 -3.71 -0.02 3.88 16 17 N -0.59 -14.33 2.99 -172.32 -0.51 -14.85 16 18 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 19 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 20 C 0.00 0.09 5.04 -17.43 -0.09 0.01 16 21 N -0.91 -25.40 11.04 55.49 0.61 -24.79 16 22 Si 0.90 21.37 29.57 -169.99 -5.03 16.35 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.15 3.27 6.26 -3.72 -0.02 3.25 16 27 C -0.14 -2.66 4.71 -26.61 -0.13 -2.78 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 6.25 7.19 -40.82 -0.29 5.95 16 36 H 0.06 0.99 6.31 -51.93 -0.33 0.66 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.37 3.41 9.12 45.56 0.42 3.83 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16 41 H 0.02 0.35 6.88 -51.93 -0.36 -0.01 16 42 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 46 H 0.07 1.40 6.24 -51.93 -0.32 1.08 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -30.98 359.52 -7.75 -38.72 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.91 Total: 10.15 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -0.35 Total: 3.68 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.09 Total: -50.85 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.79 Total: -23.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.98 -7.75 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755180719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.216 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds