Wall clock time and date at job start Fri Apr 10 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86980 * 2 1 4 4 O 1.43740 * 110.00855 * 238.90587 * 2 1 3 5 5 C 1.44382 * 106.97346 * 267.02399 * 4 2 1 6 6 C 1.54994 * 103.49096 * 319.93382 * 5 4 2 7 7 C 1.54102 * 109.87662 * 120.99823 * 2 1 3 8 8 H 1.09000 * 110.48585 * 358.73547 * 7 2 1 9 9 C 1.50698 * 110.48780 * 236.22423 * 7 2 1 10 10 O 1.21274 * 120.00185 * 359.97438 * 9 7 2 11 11 N 1.34787 * 119.99801 * 180.02562 * 9 7 2 12 12 C 1.46496 * 119.99571 * 185.05521 * 11 9 7 13 13 C 1.53000 * 109.46009 * 57.25984 * 12 11 9 14 14 O 1.42897 * 109.47294 * 54.80411 * 13 12 11 15 15 C 1.53047 * 109.45610 * 177.22730 * 12 11 9 16 16 C 1.53190 * 109.31152 * 58.62800 * 15 12 11 17 17 N 1.46926 * 108.76270 * 54.65879 * 16 15 12 18 18 C 1.36937 * 120.63179 * 126.36139 * 17 16 15 19 19 H 1.07996 * 120.00658 * 210.57732 * 18 17 16 20 20 C 1.38817 * 120.00155 * 30.57662 * 18 17 16 21 21 N 1.31619 * 119.99708 * 11.46668 * 20 18 17 22 22 Si 1.86795 * 120.00247 * 191.46871 * 20 18 17 23 23 H 1.48501 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47264 * 119.99753 * 22 20 18 25 25 H 1.48496 * 109.47247 * 239.99873 * 22 20 18 26 26 C 1.46919 * 118.73901 * 306.37925 * 17 16 15 27 27 C 1.53038 * 109.46449 * 297.27843 * 12 11 9 28 28 H 1.09002 * 109.47683 * 299.00582 * 1 2 3 29 29 H 1.09000 * 109.46615 * 58.99896 * 1 2 3 30 30 H 1.08996 * 109.47345 * 178.99670 * 1 2 3 31 31 H 1.09002 * 110.62176 * 78.44212 * 5 4 2 32 32 H 1.09000 * 110.61155 * 201.27864 * 5 4 2 33 33 H 1.08998 * 110.90789 * 278.82784 * 6 5 4 34 34 H 1.09000 * 110.90831 * 155.22200 * 6 5 4 35 35 H 0.97000 * 119.99677 * 5.05764 * 11 9 7 36 36 H 1.08997 * 109.46507 * 294.79991 * 13 12 11 37 37 H 1.08999 * 109.46900 * 174.80625 * 13 12 11 38 38 H 0.96708 * 113.99550 * 180.02562 * 14 13 12 39 39 H 1.08993 * 109.49724 * 178.59734 * 15 12 11 40 40 H 1.09002 * 109.49787 * 298.69241 * 15 12 11 41 41 H 1.08996 * 109.60216 * 294.87079 * 16 15 12 42 42 H 1.09001 * 109.58299 * 174.43273 * 16 15 12 43 43 H 0.97005 * 120.00400 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.58610 * 293.82183 * 26 17 16 45 45 H 1.09004 * 109.58784 * 173.39976 * 26 17 16 46 46 H 1.09003 * 109.49544 * 61.31334 * 27 12 11 47 47 H 1.08994 * 109.49880 * 181.41018 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0218 -0.6975 -1.1566 5 6 2.2334 -2.0703 -0.7625 6 6 2.8357 -1.9493 0.6605 7 6 2.0539 -0.7464 1.2422 8 1 1.2236 -1.0906 1.8589 9 6 2.9713 0.1414 2.0430 10 8 3.1985 1.2727 1.6697 11 7 3.5401 -0.3223 3.1736 12 6 4.3422 0.5734 4.0105 13 6 3.4939 1.7761 4.4288 14 8 2.2976 1.3180 5.0619 15 6 4.8110 -0.1785 5.2584 16 6 5.6305 -1.4015 4.8349 17 7 6.7192 -0.9586 3.9532 18 6 8.0186 -1.2923 4.2273 19 1 8.8195 -0.6288 3.9364 20 6 8.3066 -2.4836 4.8792 21 7 7.3679 -3.3932 5.0330 22 14 10.0264 -2.7957 5.5381 23 1 10.8912 -1.6263 5.2381 24 1 9.9638 -3.0016 7.0075 25 1 10.5917 -4.0074 4.8921 26 6 6.3871 -0.1506 2.7719 27 6 5.5587 1.0582 3.2184 28 1 -0.3634 0.4983 0.8987 29 1 -0.3632 0.5293 -0.8809 30 1 -0.3634 -1.0275 -0.0180 31 1 1.2878 -2.6118 -0.7344 32 1 2.9346 -2.5598 -1.4384 33 1 3.9031 -1.7337 0.6140 34 1 2.6475 -2.8527 1.2406 35 1 3.4183 -1.2490 3.4330 36 1 3.2367 2.3633 3.5473 37 1 4.0595 2.3950 5.1252 38 1 1.7101 2.0286 5.3536 39 1 5.4285 0.4798 5.8693 40 1 3.9444 -0.5032 5.8344 41 1 4.9904 -2.1036 4.3008 42 1 6.0491 -1.8844 5.7180 43 1 7.5689 -4.2255 5.4889 44 1 5.8085 -0.7507 2.0695 45 1 7.3048 0.1919 2.2937 46 1 5.2244 1.6139 2.3423 47 1 6.1692 1.7047 3.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755180719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:38 Heat of formation + Delta-G solvation = -134.716236 kcal Electronic energy + Delta-G solvation = -28552.621306 eV Core-core repulsion = 24734.892551 eV Total energy + Delta-G solvation = -3817.728755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87322 -40.39713 -38.63508 -37.43046 -35.62490 -34.05817 -33.24019 -32.25153 -31.72058 -31.47898 -28.41220 -27.68514 -25.64822 -24.05323 -23.68138 -22.84265 -22.29483 -21.05418 -20.17561 -18.93965 -18.59649 -18.10659 -17.23401 -16.97411 -16.82011 -16.37945 -16.03739 -15.69849 -15.58686 -15.26594 -15.10314 -14.92577 -14.50500 -14.38971 -14.22699 -13.93741 -13.64021 -13.30763 -13.23520 -13.02103 -12.94001 -12.82262 -12.66282 -12.58520 -12.39272 -12.21736 -12.00111 -11.89620 -11.85306 -11.80017 -11.44338 -11.31570 -11.01609 -10.63577 -10.55643 -10.33239 -9.91037 -8.62579 -7.86830 -5.35957 1.45966 1.48464 1.58032 1.68818 2.20914 2.50658 2.91493 3.26030 3.31817 3.50091 3.58943 3.69913 3.80557 3.94933 4.00198 4.14844 4.20024 4.25839 4.35095 4.43684 4.45683 4.54188 4.63691 4.65418 4.66715 4.69219 4.74042 4.81570 4.90470 4.93543 5.00122 5.05331 5.10344 5.17228 5.19938 5.26285 5.29304 5.47425 5.63933 5.67689 5.75373 5.95383 6.41341 6.65784 6.89988 7.16881 7.30303 7.84892 8.37959 9.18617 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.004396 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.779349 B = 6367.236285 C = 7332.497808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.090 0.910 4 O -0.395 6.395 5 C 0.047 3.953 6 C -0.144 4.144 7 C -0.135 4.135 8 H 0.133 0.867 9 C 0.526 3.474 10 O -0.572 6.572 11 N -0.695 5.695 12 C 0.193 3.807 13 C 0.076 3.924 14 O -0.575 6.575 15 C -0.126 4.126 16 C 0.182 3.818 17 N -0.605 5.605 18 C -0.265 4.265 19 H 0.060 0.940 20 C -0.042 4.042 21 N -0.930 5.930 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.292 1.292 26 C 0.156 3.844 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.404 0.596 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.392 0.608 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.008 0.992 42 H 0.058 0.942 43 H 0.251 0.749 44 H 0.009 0.991 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 5.377 -4.313 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.108 0.892 4 O -0.314 6.314 5 C -0.029 4.029 6 C -0.182 4.182 7 C -0.156 4.156 8 H 0.151 0.849 9 C 0.314 3.686 10 O -0.452 6.452 11 N -0.344 5.344 12 C 0.107 3.893 13 C -0.003 4.003 14 O -0.382 6.382 15 C -0.166 4.166 16 C 0.056 3.944 17 N -0.328 5.328 18 C -0.395 4.395 19 H 0.077 0.923 20 C -0.238 4.238 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.219 1.219 26 C 0.030 3.970 27 C -0.172 4.172 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.239 0.761 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.909 5.549 -4.812 16.620 hybrid contribution 0.953 -0.337 0.830 1.308 sum -13.956 5.213 -3.982 15.421 Atomic orbital electron populations 1.22201 0.93120 1.03354 1.03080 1.22742 0.95251 0.96986 0.82836 0.89249 1.88896 1.86361 1.22180 1.33995 1.23707 1.01099 0.83724 0.94379 1.23134 0.99534 0.97774 0.97770 1.22770 0.98983 0.96037 0.97790 0.84923 1.20551 0.80150 0.87531 0.80391 1.90564 1.63491 1.21365 1.69788 1.45878 1.50868 1.14289 1.23392 1.20201 0.89286 0.89603 0.90235 1.22449 0.86319 0.95110 0.96424 1.86419 1.33165 1.38470 1.80123 1.22233 0.99653 0.98926 0.95745 1.20577 0.87772 0.91901 0.94138 1.44220 1.03209 1.61010 1.24393 1.19491 0.84783 1.00411 1.34820 0.92252 1.25778 1.00703 0.94902 1.02412 1.70108 1.33794 1.07318 1.46374 0.85245 0.80389 0.77482 0.77536 1.19544 1.21477 1.21908 1.20798 0.96201 0.91168 0.88810 1.22216 0.95839 0.98587 1.00543 0.90651 0.91626 0.90971 0.89511 0.88166 0.92477 0.87317 0.76083 0.92688 0.92347 0.75908 0.91729 0.90578 0.97448 0.92367 0.94017 0.97339 0.93781 0.90775 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.31 71.98 0.67 -2.17 16 2 C 0.08 1.95 3.70 30.97 0.11 2.06 16 3 H 0.09 2.66 6.44 -2.39 -0.02 2.65 16 4 O -0.39 -10.59 11.20 -148.98 -1.67 -12.26 16 5 C 0.05 0.96 7.67 72.66 0.56 1.51 16 6 C -0.14 -3.26 6.69 31.89 0.21 -3.05 16 7 C -0.13 -3.14 3.07 -10.55 -0.03 -3.17 16 8 H 0.13 2.41 7.70 -2.39 -0.02 2.39 16 9 C 0.53 15.89 6.43 87.65 0.56 16.45 16 10 O -0.57 -20.21 11.56 -3.01 -0.03 -20.24 16 11 N -0.69 -21.40 3.87 -422.80 -1.64 -23.04 16 12 C 0.19 6.35 0.44 3.63 0.00 6.35 16 13 C 0.08 2.12 5.59 71.98 0.40 2.52 16 14 O -0.57 -14.22 12.94 -148.98 -1.93 -16.15 16 15 C -0.13 -4.56 4.88 30.67 0.15 -4.41 16 16 C 0.18 8.26 4.99 86.36 0.43 8.70 16 17 N -0.60 -29.76 2.99 -699.11 -2.09 -31.84 16 18 C -0.26 -14.44 9.59 84.03 0.81 -13.63 16 19 H 0.06 3.23 7.85 -2.91 -0.02 3.20 16 20 C -0.04 -2.30 5.04 84.86 0.43 -1.87 16 21 N -0.93 -52.89 11.04 21.65 0.24 -52.65 16 22 Si 0.96 44.24 29.57 68.60 2.03 46.27 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 C 0.16 6.75 6.26 86.36 0.54 7.29 16 27 C -0.13 -4.84 4.71 30.67 0.14 -4.69 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.64 7.86 -2.39 -0.02 1.62 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.40 12.16 7.19 -92.71 -0.67 11.49 16 36 H 0.05 1.66 6.31 -2.39 -0.02 1.64 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.39 5.99 9.12 -74.05 -0.68 5.31 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.08 2.56 7.79 -2.39 -0.02 2.54 16 41 H 0.01 0.35 6.88 -2.39 -0.02 0.33 16 42 H 0.06 3.05 6.06 -2.39 -0.01 3.04 16 43 H 0.25 13.80 8.31 -92.70 -0.77 13.02 16 44 H 0.01 0.39 7.74 -2.38 -0.02 0.37 16 45 H 0.04 1.94 7.93 -2.38 -0.02 1.92 16 46 H 0.07 2.76 6.24 -2.39 -0.01 2.75 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -66.95 359.52 -0.46 -67.41 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.36 Total: 30.62 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.99 Total: 11.89 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -3.49 Total: -107.53 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -3.63 Total: -48.65 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.95 -0.46 -67.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755180719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.310 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds