Wall clock time and date at job start Fri Apr 10 2020 18:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99935 * 2 1 4 4 C 1.52999 * 109.47106 * 270.00043 * 3 2 1 5 5 H 1.09002 * 109.47619 * 304.99864 * 4 3 2 6 6 O 1.42899 * 109.47168 * 65.00364 * 4 3 2 7 7 C 1.53002 * 109.47167 * 185.00258 * 4 3 2 8 8 N 1.46494 * 109.47287 * 180.02562 * 7 4 3 9 9 C 1.36945 * 120.00094 * 180.02562 * 8 7 4 10 10 H 1.08002 * 119.99773 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00104 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99577 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47253 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47054 * 120.00283 * 13 11 9 16 16 H 1.48506 * 109.46754 * 239.99845 * 13 11 9 17 17 C 1.34776 * 119.99969 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00062 * 179.97438 * 17 2 1 19 19 C 1.50697 * 119.99821 * 359.97438 * 17 2 1 20 20 H 1.08995 * 115.57398 * 36.16733 * 19 17 2 21 21 C 1.53066 * 117.50604 * 181.90726 * 19 17 2 22 22 C 1.52701 * 59.93300 * 107.46488 * 21 19 17 23 23 C 1.53250 * 117.87707 * 107.77047 * 22 21 19 24 24 C 1.53331 * 108.48799 * 196.24364 * 23 22 21 25 25 O 1.42871 * 109.32665 * 306.04767 * 24 23 22 26 26 C 1.42867 * 114.53018 * 64.35092 * 25 24 23 27 27 C 1.53245 * 117.88126 * 252.22269 * 22 21 19 28 28 H 1.09003 * 109.46983 * 270.00165 * 1 2 3 29 29 H 1.09006 * 109.47041 * 29.99826 * 1 2 3 30 30 H 1.08994 * 109.47149 * 149.99808 * 1 2 3 31 31 H 1.08996 * 109.47396 * 30.00145 * 3 2 1 32 32 H 1.09004 * 109.46994 * 150.00464 * 3 2 1 33 33 H 0.96702 * 113.99882 * 60.00196 * 6 4 3 34 34 H 1.09000 * 109.47046 * 300.00215 * 7 4 3 35 35 H 1.09001 * 109.47108 * 59.99429 * 7 4 3 36 36 H 0.96999 * 120.00426 * 359.97438 * 8 7 4 37 37 H 0.96999 * 119.99693 * 180.02562 * 12 11 9 38 38 H 1.09001 * 117.50373 * 214.93288 * 21 19 17 39 39 H 1.08997 * 117.50739 * 359.97438 * 21 19 17 40 40 H 1.08996 * 109.63909 * 315.95002 * 23 22 21 41 41 H 1.09004 * 109.62909 * 76.55272 * 23 22 21 42 42 H 1.09001 * 109.49736 * 186.08643 * 24 23 22 43 43 H 1.09004 * 109.48807 * 65.99715 * 24 23 22 44 44 H 1.08994 * 109.49290 * 175.68450 * 26 25 24 45 45 H 1.09003 * 109.49204 * 55.59655 * 26 25 24 46 46 H 1.09004 * 109.63526 * 283.45183 * 27 22 21 47 47 H 1.08999 * 109.63126 * 43.84808 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9132 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3238 2.9681 -1.4443 8 7 3.5675 3.3914 -2.8255 9 6 4.3284 4.5018 -3.0772 10 1 4.7486 5.0656 -2.2575 11 6 4.5588 4.9031 -4.3859 12 7 4.0464 4.2162 -5.3849 13 14 5.5963 6.4182 -4.7292 14 1 6.0512 7.0081 -3.4447 15 1 6.7770 6.0353 -5.5444 16 1 4.7847 7.4159 -5.4717 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4722 -0.0005 20 1 0.4625 -2.4827 -0.5804 21 6 2.2070 -3.7629 0.0441 22 6 1.4260 -3.3102 1.2757 23 6 0.1669 -4.0972 1.6550 24 6 -0.6579 -3.2527 2.6335 25 8 0.1656 -2.8663 3.7351 26 6 1.2549 -2.0090 3.3893 27 6 2.2201 -2.7623 2.4663 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 0.6956 2.6951 -1.6542 34 1 2.8121 3.7654 -0.9052 35 1 4.2746 2.7521 -0.9569 36 1 3.1905 2.8848 -3.5617 37 1 4.2077 4.4965 -6.2994 38 1 1.8245 -4.6224 -0.5066 39 1 3.2924 -3.6680 0.0729 40 1 -0.4215 -4.3003 0.7603 41 1 0.4512 -5.0358 2.1309 42 1 -1.5017 -3.8387 2.9980 43 1 -1.0260 -2.3619 2.1244 44 1 1.7801 -1.7048 4.2946 45 1 0.8742 -1.1265 2.8751 46 1 2.6792 -3.5872 3.0112 47 1 2.9945 -2.0836 2.1088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755796436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:49 Heat of formation + Delta-G solvation = -94.073191 kcal Electronic energy + Delta-G solvation = -27061.408195 eV Core-core repulsion = 23245.441854 eV Total energy + Delta-G solvation = -3815.966340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93874 -39.23729 -37.65629 -36.46766 -35.21148 -33.99305 -31.61519 -31.39330 -30.56260 -29.57639 -26.82456 -26.11641 -24.15341 -24.01905 -23.09831 -22.26173 -21.19256 -19.90202 -18.64584 -17.43812 -17.15016 -16.69118 -16.40618 -16.32342 -15.97135 -15.37483 -15.21588 -15.00809 -14.51014 -14.41703 -13.99691 -13.68878 -13.54446 -13.32303 -13.12014 -12.95960 -12.80077 -12.59048 -12.39660 -12.23500 -12.03267 -11.71754 -11.58492 -11.28547 -11.09907 -10.92606 -10.82469 -10.72528 -10.67570 -10.37336 -10.14424 -9.97478 -9.76401 -9.64356 -9.55108 -8.88385 -8.52306 -6.90028 -5.73094 -3.02545 2.36460 2.85568 3.44724 3.46818 3.49785 3.52470 3.52678 4.11562 4.34471 4.41610 4.43878 4.57091 4.61472 4.64032 4.74634 4.81348 4.96911 5.00324 5.05593 5.13848 5.18669 5.23614 5.29778 5.33740 5.35922 5.46446 5.51738 5.57591 5.59673 5.67941 5.69596 5.75880 5.79988 5.81272 5.92852 6.00017 6.24570 6.43859 6.55162 6.75685 6.86071 7.27813 7.70856 8.01552 8.12372 8.45104 9.56517 10.14598 10.50436 11.49399 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.002591 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.681924 B =10805.916041 C =10886.452416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.087 3.913 4 C 0.087 3.913 5 H 0.100 0.900 6 O -0.551 6.551 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.543 3.457 18 O -0.535 6.535 19 C -0.184 4.184 20 H 0.124 0.876 21 C -0.136 4.136 22 C -0.099 4.099 23 C -0.118 4.118 24 C 0.063 3.937 25 O -0.383 6.383 26 C 0.065 3.935 27 C -0.127 4.127 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.366 0.634 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.389 0.611 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 -17.222 17.970 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.118 0.882 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.331 3.669 18 O -0.413 6.413 19 C -0.205 4.205 20 H 0.142 0.858 21 C -0.173 4.173 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.014 4.014 25 O -0.302 6.302 26 C -0.011 4.011 27 C -0.165 4.165 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.212 0.788 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.223 0.777 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.772 -17.590 17.785 27.646 hybrid contribution 0.260 1.307 -0.632 1.475 sum -11.512 -16.284 17.153 26.304 Atomic orbital electron populations 1.21830 0.79411 1.03885 1.01017 1.47622 1.07050 1.05652 1.73128 1.22236 0.98345 0.84525 0.98558 1.22541 0.85130 0.98139 0.91541 0.88244 1.86622 1.32353 1.58954 1.57536 1.21214 0.96364 0.92902 0.89741 1.42251 1.61754 1.32231 1.00793 1.19270 1.23578 1.02584 0.91841 0.91220 1.24769 1.01212 0.99434 0.95585 1.69697 1.49112 1.40792 0.98205 0.86110 0.79713 0.82562 0.77755 1.20572 1.21828 1.21855 1.19567 0.87329 0.84295 0.75673 1.90715 1.13712 1.87148 1.49687 1.22460 1.02886 0.91259 1.03852 0.85817 1.23064 0.99942 0.95296 0.99025 1.21424 0.98784 1.00564 0.89170 1.21864 0.94624 0.98888 1.00138 1.22599 0.92820 0.97987 0.88009 1.87868 1.41518 1.67887 1.32906 1.22584 0.87460 0.91925 0.99179 1.21926 0.98208 1.01302 0.95040 0.93165 0.90164 0.91212 0.90142 0.88884 0.78752 0.96306 0.95544 0.77674 0.93561 0.87832 0.87178 0.90435 0.90069 0.88733 0.93064 0.88718 0.93168 0.90220 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.08 59.85 0.60 1.29 16 2 N -0.60 -7.11 2.84 -181.57 -0.52 -7.62 16 3 C 0.09 1.13 5.06 -4.04 -0.02 1.11 16 4 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16 5 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 6 O -0.55 -9.13 11.91 -35.23 -0.42 -9.55 16 7 C 0.13 2.58 5.92 -4.04 -0.02 2.56 16 8 N -0.73 -19.19 5.49 -59.91 -0.33 -19.52 16 9 C -0.24 -6.98 9.99 -15.05 -0.15 -7.13 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.10 13.06 55.49 0.72 -28.37 16 13 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 C 0.54 7.21 6.27 -10.99 -0.07 7.14 16 18 O -0.54 -9.11 14.83 5.56 0.08 -9.03 16 19 C -0.18 -1.82 4.94 -91.88 -0.45 -2.28 16 20 H 0.12 1.02 6.51 -51.93 -0.34 0.68 16 21 C -0.14 -1.28 9.52 -26.85 -0.26 -1.53 16 22 C -0.10 -0.84 2.03 -154.54 -0.31 -1.16 16 23 C -0.12 -0.77 5.92 -26.43 -0.16 -0.92 16 24 C 0.06 0.42 6.85 37.33 0.26 0.68 16 25 O -0.38 -3.57 10.69 -35.23 -0.38 -3.95 16 26 C 0.07 0.57 6.85 37.33 0.26 0.82 16 27 C -0.13 -1.19 5.58 -26.44 -0.15 -1.34 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.67 7.11 -51.93 -0.37 0.30 16 30 H 0.07 0.52 6.02 -51.93 -0.31 0.20 16 31 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.37 4.77 9.04 45.56 0.41 5.19 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.39 11.10 7.54 -40.82 -0.31 10.79 16 37 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 1.23 7.67 -51.93 -0.40 0.83 16 40 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.00 6.13 -51.93 -0.32 0.68 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -35.37 376.79 -7.89 -43.27 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.05 Total: 11.11 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.66 Total: 0.12 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.12 Total: -55.51 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.71 Total: -22.52 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.37 -7.89 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.808 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds