Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99935 * 2 1 4 4 C 1.52999 * 109.47106 * 270.00043 * 3 2 1 5 5 H 1.09002 * 109.47619 * 304.99864 * 4 3 2 6 6 O 1.42899 * 109.47168 * 65.00364 * 4 3 2 7 7 C 1.53002 * 109.47167 * 185.00258 * 4 3 2 8 8 N 1.46494 * 109.47287 * 180.02562 * 7 4 3 9 9 C 1.36945 * 120.00094 * 180.02562 * 8 7 4 10 10 H 1.08002 * 119.99773 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00104 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99577 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47253 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47054 * 120.00283 * 13 11 9 16 16 H 1.48506 * 109.46754 * 239.99845 * 13 11 9 17 17 C 1.34776 * 119.99969 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00062 * 179.97438 * 17 2 1 19 19 C 1.50697 * 119.99821 * 359.97438 * 17 2 1 20 20 H 1.08995 * 115.57398 * 36.16733 * 19 17 2 21 21 C 1.53066 * 117.50604 * 181.90726 * 19 17 2 22 22 C 1.52701 * 59.93300 * 107.46488 * 21 19 17 23 23 C 1.53250 * 117.87707 * 107.77047 * 22 21 19 24 24 C 1.53331 * 108.48799 * 196.24364 * 23 22 21 25 25 O 1.42871 * 109.32665 * 306.04767 * 24 23 22 26 26 C 1.42867 * 114.53018 * 64.35092 * 25 24 23 27 27 C 1.53245 * 117.88126 * 252.22269 * 22 21 19 28 28 H 1.09003 * 109.46983 * 270.00165 * 1 2 3 29 29 H 1.09006 * 109.47041 * 29.99826 * 1 2 3 30 30 H 1.08994 * 109.47149 * 149.99808 * 1 2 3 31 31 H 1.08996 * 109.47396 * 30.00145 * 3 2 1 32 32 H 1.09004 * 109.46994 * 150.00464 * 3 2 1 33 33 H 0.96702 * 113.99882 * 60.00196 * 6 4 3 34 34 H 1.09000 * 109.47046 * 300.00215 * 7 4 3 35 35 H 1.09001 * 109.47108 * 59.99429 * 7 4 3 36 36 H 0.96999 * 120.00426 * 359.97438 * 8 7 4 37 37 H 0.96999 * 119.99693 * 180.02562 * 12 11 9 38 38 H 1.09001 * 117.50373 * 214.93288 * 21 19 17 39 39 H 1.08997 * 117.50739 * 359.97438 * 21 19 17 40 40 H 1.08996 * 109.63909 * 315.95002 * 23 22 21 41 41 H 1.09004 * 109.62909 * 76.55272 * 23 22 21 42 42 H 1.09001 * 109.49736 * 186.08643 * 24 23 22 43 43 H 1.09004 * 109.48807 * 65.99715 * 24 23 22 44 44 H 1.08994 * 109.49290 * 175.68450 * 26 25 24 45 45 H 1.09003 * 109.49204 * 55.59655 * 26 25 24 46 46 H 1.09004 * 109.63526 * 283.45183 * 27 22 21 47 47 H 1.08999 * 109.63126 * 43.84808 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9132 -1.9816 6 8 1.2060 1.9936 -2.0813 7 6 3.3238 2.9681 -1.4443 8 7 3.5675 3.3914 -2.8255 9 6 4.3284 4.5018 -3.0772 10 1 4.7486 5.0656 -2.2575 11 6 4.5588 4.9031 -4.3859 12 7 4.0464 4.2162 -5.3849 13 14 5.5963 6.4182 -4.7292 14 1 6.0512 7.0081 -3.4447 15 1 6.7770 6.0353 -5.5444 16 1 4.7847 7.4159 -5.4717 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4722 -0.0005 20 1 0.4625 -2.4827 -0.5804 21 6 2.2070 -3.7629 0.0441 22 6 1.4260 -3.3102 1.2757 23 6 0.1669 -4.0972 1.6550 24 6 -0.6579 -3.2527 2.6335 25 8 0.1656 -2.8663 3.7351 26 6 1.2549 -2.0090 3.3893 27 6 2.2201 -2.7623 2.4663 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 0.6956 2.6951 -1.6542 34 1 2.8121 3.7654 -0.9052 35 1 4.2746 2.7521 -0.9569 36 1 3.1905 2.8848 -3.5617 37 1 4.2077 4.4965 -6.2994 38 1 1.8245 -4.6224 -0.5066 39 1 3.2924 -3.6680 0.0729 40 1 -0.4215 -4.3003 0.7603 41 1 0.4512 -5.0358 2.1309 42 1 -1.5017 -3.8387 2.9980 43 1 -1.0260 -2.3619 2.1244 44 1 1.7801 -1.7048 4.2946 45 1 0.8742 -1.1265 2.8751 46 1 2.6792 -3.5872 3.0112 47 1 2.9945 -2.0836 2.1088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755796436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = -121.114444 kcal Electronic energy + Delta-G solvation = -27062.580791 eV Core-core repulsion = 23245.441854 eV Total energy + Delta-G solvation = -3817.138937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78620 -40.10096 -38.88204 -37.31400 -36.41498 -35.80896 -33.27093 -32.20709 -31.46770 -30.85095 -27.95117 -27.34680 -25.47939 -24.72302 -24.11522 -23.42854 -22.67101 -20.69274 -19.48598 -19.27241 -18.37634 -17.73487 -17.22787 -17.06916 -16.97498 -16.63567 -16.47463 -16.09880 -15.82632 -15.51244 -15.25538 -14.88527 -14.60055 -14.39999 -14.19446 -14.03099 -13.85093 -13.69585 -13.46313 -13.21761 -13.00269 -12.95363 -12.81488 -12.66783 -12.29761 -12.18506 -12.03662 -12.00199 -11.85703 -11.73606 -11.37184 -11.30066 -11.05710 -11.02306 -10.73952 -10.24359 -9.57417 -9.05205 -7.97534 -5.28105 1.40993 1.44883 1.46735 1.56818 1.93860 2.53177 2.70973 2.94473 3.33427 3.37126 3.44542 3.63020 3.67339 3.73188 3.80348 3.89930 4.04161 4.04476 4.14003 4.19942 4.30476 4.41217 4.47164 4.48269 4.53595 4.61703 4.66062 4.72278 4.76883 4.79359 4.82491 4.87455 4.89889 4.97981 5.04435 5.10398 5.17620 5.19915 5.25585 5.43613 5.48823 6.23128 6.27597 6.34927 6.85950 7.13832 7.29421 8.04736 8.28108 9.26185 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030339 B = 0.002591 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.681924 B =10805.916041 C =10886.452416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.097 3.903 4 C 0.106 3.894 5 H 0.060 0.940 6 O -0.560 6.560 7 C 0.124 3.876 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.264 1.264 15 H -0.294 1.294 16 H -0.290 1.290 17 C 0.533 3.467 18 O -0.585 6.585 19 C -0.187 4.187 20 H 0.148 0.852 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.112 4.112 24 C 0.056 3.944 25 O -0.399 6.399 26 C 0.070 3.930 27 C -0.128 4.128 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.384 0.616 34 H 0.042 0.958 35 H 0.021 0.979 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 -17.265 19.376 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C -0.027 4.027 4 C 0.045 3.955 5 H 0.078 0.922 6 O -0.367 6.367 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.188 1.188 15 H -0.221 1.221 16 H -0.217 1.217 17 C 0.323 3.677 18 O -0.466 6.466 19 C -0.208 4.208 20 H 0.165 0.835 21 C -0.182 4.182 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.021 4.021 25 O -0.318 6.318 26 C -0.007 4.007 27 C -0.166 4.166 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.233 0.767 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.909 -17.624 19.253 29.576 hybrid contribution 0.885 1.285 -1.016 1.862 sum -13.024 -16.339 18.237 27.734 Atomic orbital electron populations 1.22092 0.76917 1.04811 1.02815 1.47726 1.08538 1.04717 1.72148 1.22023 0.98876 0.86169 0.95609 1.22161 0.84571 0.95250 0.93501 0.92150 1.86586 1.31983 1.59843 1.58308 1.21426 0.97051 0.95047 0.86850 1.42470 1.61564 1.31684 1.02744 1.19711 1.23095 1.02971 0.92205 0.90411 1.25673 1.03075 1.02844 0.95491 1.69866 1.51044 1.42803 0.98379 0.85003 0.77627 0.78725 0.77952 1.18791 1.22134 1.21675 1.20220 0.87015 0.85728 0.74706 1.90689 1.16015 1.87930 1.51972 1.22499 1.03323 0.89520 1.05436 0.83467 1.23112 0.98675 0.95971 1.00394 1.21488 0.99301 0.99583 0.88121 1.21897 0.93494 0.98426 1.01070 1.22837 0.92929 0.98699 0.87597 1.87854 1.41662 1.67943 1.34304 1.22527 0.87348 0.91708 0.99115 1.21885 0.98024 1.00928 0.95741 0.90839 0.89733 0.89881 0.86571 0.90378 0.76695 0.94027 0.96083 0.79417 0.93978 0.85438 0.89852 0.88233 0.89750 0.86851 0.92155 0.88336 0.93170 0.90176 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.08 127.77 1.29 2.33 16 2 N -0.60 -13.47 2.84 -846.75 -2.40 -15.87 16 3 C 0.10 2.44 5.06 86.38 0.44 2.88 16 4 C 0.11 3.59 3.30 30.59 0.10 3.70 16 5 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 6 O -0.56 -18.06 11.91 -148.98 -1.77 -19.84 16 7 C 0.12 5.03 5.92 86.38 0.51 5.54 16 8 N -0.74 -39.77 5.49 -343.45 -1.89 -41.66 16 9 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 10 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 11 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 12 N -0.97 -61.90 13.06 21.65 0.28 -61.61 16 13 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 14 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 C 0.53 14.18 6.27 87.66 0.55 14.73 16 18 O -0.59 -21.02 14.83 -3.03 -0.04 -21.06 16 19 C -0.19 -3.47 4.94 -11.61 -0.06 -3.53 16 20 H 0.15 1.99 6.51 -2.39 -0.02 1.98 16 21 C -0.14 -2.63 9.52 30.52 0.29 -2.34 16 22 C -0.08 -1.32 2.03 -52.21 -0.11 -1.42 16 23 C -0.11 -1.11 5.92 30.79 0.18 -0.92 16 24 C 0.06 0.57 6.85 72.09 0.49 1.07 16 25 O -0.40 -6.56 10.69 -148.98 -1.59 -8.16 16 26 C 0.07 1.14 6.85 72.09 0.49 1.63 16 27 C -0.13 -2.38 5.58 30.78 0.17 -2.21 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.14 7.11 -2.38 -0.02 1.12 16 30 H 0.08 0.95 6.02 -2.39 -0.01 0.94 16 31 H 0.12 2.09 8.07 -2.39 -0.02 2.08 16 32 H 0.08 2.24 7.42 -2.39 -0.02 2.22 16 33 H 0.38 9.20 9.04 -74.06 -0.67 8.53 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.37 21.96 7.54 -92.71 -0.70 21.26 16 37 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 1.98 7.67 -2.39 -0.02 1.97 16 40 H 0.10 0.60 8.08 -2.39 -0.02 0.58 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 1.46 6.13 -2.39 -0.01 1.44 16 Total: -1.00 -78.93 376.79 -0.12 -79.05 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.39 Total: 36.13 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.66 Total: 3.71 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -4.01 Total: -119.15 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -3.41 Total: -49.06 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.93 -0.12 -79.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755796436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.061 kcal (2) G-P(sol) polarization free energy of solvation -78.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds