Wall clock time and date at job start Fri Apr 10 2020 18:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 111.00250 * 2 1 4 4 C 1.46904 * 110.99843 * 123.95513 * 2 1 3 5 5 C 1.50698 * 109.47159 * 169.99334 * 4 2 1 6 6 O 1.21284 * 119.99641 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00373 * 180.02562 * 5 4 2 8 8 C 1.47079 * 120.88593 * 180.02562 * 7 5 4 9 9 C 1.53235 * 108.52223 * 231.20463 * 8 7 5 10 10 N 1.46904 * 109.34080 * 306.16626 * 9 8 7 11 11 C 1.46889 * 110.99974 * 187.25095 * 10 9 8 12 12 C 1.50706 * 109.47109 * 170.00183 * 11 10 9 13 13 O 1.21281 * 119.99699 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99801 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47280 * 89.99544 * 20 18 16 22 22 H 1.48504 * 109.46876 * 209.99818 * 20 18 16 23 23 H 1.48502 * 109.46730 * 329.99316 * 20 18 16 24 24 C 1.46905 * 111.26630 * 63.10523 * 10 9 8 25 25 C 1.47086 * 120.87967 * 0.02562 * 7 5 4 26 26 H 1.09010 * 109.46446 * 296.04833 * 1 2 3 27 27 H 1.09001 * 109.46794 * 56.04430 * 1 2 3 28 28 H 1.08997 * 109.47312 * 176.04896 * 1 2 3 29 29 H 1.09003 * 109.46713 * 183.95354 * 3 2 1 30 30 H 1.08998 * 109.46977 * 303.95626 * 3 2 1 31 31 H 1.09001 * 109.47303 * 63.95573 * 3 2 1 32 32 H 1.08998 * 109.46977 * 49.99826 * 4 2 1 33 33 H 1.08994 * 109.47167 * 289.99605 * 4 2 1 34 34 H 1.09006 * 109.63047 * 111.49097 * 8 7 5 35 35 H 1.09005 * 109.78552 * 351.00918 * 8 7 5 36 36 H 1.09001 * 109.49466 * 186.21025 * 9 8 7 37 37 H 1.09003 * 109.49519 * 66.12774 * 9 8 7 38 38 H 1.09004 * 109.47256 * 50.00550 * 11 10 9 39 39 H 1.08998 * 109.47820 * 290.00360 * 11 10 9 40 40 H 0.97005 * 120.00161 * 359.72088 * 14 12 11 41 41 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 42 42 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 43 43 H 0.97005 * 119.99977 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.49012 * 56.85291 * 24 10 9 45 45 H 1.08996 * 109.49247 * 176.93846 * 24 10 9 46 46 H 1.08997 * 109.63282 * 248.51009 * 25 7 5 47 47 H 1.09003 * 109.62648 * 9.09074 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4817 -0.9527 0.9728 6 8 4.0468 -0.4925 0.0034 7 7 4.1829 -1.6310 1.9026 8 6 5.6341 -1.8243 1.7616 9 6 5.9458 -3.3147 1.9339 10 7 5.3768 -3.7872 3.2031 11 6 5.7985 -5.1649 3.4886 12 6 5.4056 -5.5289 4.8973 13 8 4.8313 -4.7200 5.5948 14 7 5.6935 -6.7530 5.3822 15 6 5.3110 -7.1070 6.7514 16 6 5.7383 -8.5226 7.0422 17 1 6.2438 -9.1009 6.2830 18 6 5.4839 -9.0794 8.2777 19 7 5.8564 -10.3149 8.5313 20 14 4.6089 -8.0794 9.5906 21 1 3.1427 -8.2832 9.4730 22 1 5.0638 -8.5203 10.9338 23 1 4.9249 -6.6398 9.4089 24 6 3.9121 -3.6738 3.2054 25 6 3.5172 -2.1978 3.0854 26 1 -0.3632 0.4513 0.9234 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0829 1.3430 -0.0709 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.5089 -1.7407 1.1756 33 1 1.7976 -0.2248 2.0628 34 1 6.1561 -1.2501 2.5271 35 1 5.9560 -1.4947 0.7737 36 1 7.0258 -3.4619 1.9423 37 1 5.5083 -3.8756 1.1079 38 1 6.8805 -5.2433 3.3814 39 1 5.3139 -5.8458 2.7888 40 1 6.1499 -7.4012 4.8232 41 1 5.7989 -6.4290 7.4516 42 1 4.2295 -7.0244 6.8595 43 1 5.6771 -10.7069 9.4003 44 1 3.5030 -4.2297 2.3618 45 1 3.5172 -4.0814 4.1360 46 1 3.8358 -1.6595 3.9781 47 1 2.4362 -2.1160 2.9715 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051762885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:37 Heat of formation + Delta-G solvation = -66.473968 kcal Electronic energy + Delta-G solvation = -26244.222884 eV Core-core repulsion = 22461.746087 eV Total energy + Delta-G solvation = -3782.476797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45464 -40.60800 -38.95452 -37.50754 -36.15145 -35.53319 -34.37796 -32.40010 -31.03711 -29.90237 -28.79426 -28.44831 -26.19494 -24.84233 -23.92455 -23.36641 -21.99205 -21.42199 -19.90932 -19.13926 -18.40072 -17.72804 -17.21806 -17.04564 -16.97284 -16.57259 -16.19583 -16.05738 -15.81479 -15.58443 -15.47638 -15.30294 -15.24229 -14.58827 -14.48478 -14.16507 -13.98790 -13.89155 -13.28430 -13.26696 -13.02559 -12.90016 -12.86318 -12.74735 -12.66309 -12.48041 -12.30761 -12.23530 -12.13709 -11.91491 -11.63705 -10.90363 -10.80048 -10.69262 -9.90420 -9.78020 -9.33644 -9.27008 -8.38603 -6.45504 1.34032 1.36707 1.48891 1.56770 1.78592 1.83873 2.28598 2.31912 2.96915 2.98660 3.00666 3.46796 3.84803 3.90322 4.01222 4.12384 4.16849 4.23277 4.25382 4.28486 4.34287 4.44589 4.45669 4.47855 4.57524 4.67878 4.70100 4.74320 4.81375 4.83647 4.87320 5.02142 5.03963 5.06939 5.07537 5.28941 5.41605 5.57473 5.79305 5.89244 6.02932 6.03536 6.11897 6.38364 6.56343 6.91013 7.14370 7.17877 7.47671 8.76047 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.002360 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.003151 B =11861.516114 C =12515.264536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.022 3.978 4 C 0.038 3.962 5 C 0.513 3.487 6 O -0.564 6.564 7 N -0.614 5.614 8 C 0.118 3.882 9 C 0.049 3.951 10 N -0.535 5.535 11 C 0.048 3.952 12 C 0.501 3.499 13 O -0.576 6.576 14 N -0.709 5.709 15 C 0.235 3.765 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.023 3.977 19 N -0.932 5.932 20 Si 0.939 3.061 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.259 1.259 24 C 0.037 3.963 25 C 0.120 3.880 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.041 0.959 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.408 0.592 41 H 0.011 0.989 42 H 0.012 0.988 43 H 0.272 0.728 44 H 0.040 0.960 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 19.757 -16.600 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.126 4.126 4 C -0.093 4.093 5 C 0.302 3.698 6 O -0.443 6.443 7 N -0.348 5.348 8 C -0.005 4.005 9 C -0.079 4.079 10 N -0.261 5.261 11 C -0.083 4.083 12 C 0.288 3.712 13 O -0.456 6.456 14 N -0.359 5.359 15 C 0.111 3.889 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.177 4.177 19 N -0.571 5.571 20 Si 0.763 3.237 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.091 4.091 25 C -0.002 4.002 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.382 20.501 -16.541 27.357 hybrid contribution -0.459 -0.641 0.850 1.160 sum -7.841 19.860 -15.691 26.497 Atomic orbital electron populations 1.22474 0.84906 1.03281 1.01560 1.61634 1.09253 1.14838 1.42113 1.22476 1.01426 0.87895 1.00763 1.22090 0.91251 1.01774 0.94201 1.20982 0.90206 0.77157 0.81407 1.90638 1.72198 1.50143 1.31313 1.48325 1.09012 1.54489 1.22996 1.21668 0.80078 0.95739 1.02978 1.22514 1.01627 0.94852 0.88890 1.61519 1.10219 1.20782 1.33557 1.21936 1.04108 0.90413 0.91841 1.21175 0.78674 0.81159 0.90222 1.90598 1.43493 1.50122 1.61354 1.46043 1.59511 1.14791 1.15602 1.19038 0.94653 0.94220 0.80981 1.21325 1.39545 0.97330 1.00209 0.92337 1.25639 0.95765 0.95771 1.00500 1.69990 1.47839 1.15069 1.24234 0.85830 0.79523 0.79794 0.78563 1.18948 1.20125 1.18302 1.22593 0.87667 0.96933 1.01905 1.21889 0.98425 0.92606 0.87328 0.94471 0.90427 0.90393 0.91859 0.90631 0.95124 0.86121 0.90096 0.90650 0.89115 0.87405 0.94076 0.85378 0.89915 0.75687 0.97095 0.97017 0.91929 0.94139 0.89564 0.90655 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 127.69 1.22 1.51 16 2 N -0.55 -9.60 4.76 -953.46 -4.53 -14.14 16 3 C 0.02 0.38 9.21 127.69 1.18 1.56 16 4 C 0.04 0.57 3.81 85.56 0.33 0.90 16 5 C 0.51 10.97 7.43 87.66 0.65 11.62 16 6 O -0.56 -16.09 13.77 -3.04 -0.04 -16.14 16 7 N -0.61 -11.85 3.01 -817.87 -2.46 -14.31 16 8 C 0.12 2.22 6.59 86.35 0.57 2.79 16 9 C 0.05 0.85 5.62 86.38 0.49 1.33 16 10 N -0.54 -11.87 4.37 -899.77 -3.93 -15.80 16 11 C 0.05 1.06 5.45 85.56 0.47 1.53 16 12 C 0.50 16.75 7.49 87.66 0.66 17.41 16 13 O -0.58 -23.40 14.33 -3.03 -0.04 -23.45 16 14 N -0.71 -26.28 5.55 -466.78 -2.59 -28.87 16 15 C 0.24 11.04 4.50 85.63 0.38 11.42 16 16 C -0.55 -29.38 9.83 25.60 0.25 -29.13 16 17 H 0.06 3.31 7.84 -2.91 -0.02 3.29 16 18 C 0.02 1.30 5.47 84.66 0.46 1.76 16 19 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 20 Si 0.94 43.14 27.47 68.60 1.88 45.02 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 24 C 0.04 0.81 5.26 86.39 0.45 1.26 16 25 C 0.12 2.10 6.51 86.36 0.56 2.66 16 26 H 0.04 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 28 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 29 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 30 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 31 H 0.03 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.12 1.42 7.58 -2.39 -0.02 1.40 16 33 H 0.08 0.98 7.98 -2.39 -0.02 0.96 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.82 7.07 -2.38 -0.02 1.80 16 36 H 0.11 1.46 7.99 -2.39 -0.02 1.45 16 37 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.13 2.25 7.97 -2.39 -0.02 2.24 16 39 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 40 H 0.41 13.11 8.32 -92.70 -0.77 12.34 16 41 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 42 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 43 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 2.35 5.77 -2.39 -0.01 2.33 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.11 1.32 6.02 -2.39 -0.01 1.30 16 Total: -1.00 -72.79 371.54 -3.61 -76.41 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.14 Total: 19.33 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 7.67 Total: 26.62 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -13.22 Total: -127.80 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.09 Total: -39.58 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -72.79 -3.61 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051762885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.934 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds