Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00014 * 2 1 4 4 O 1.20824 * 119.99920 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00115 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47079 * 185.31991 * 5 3 2 7 7 C 1.36932 * 120.00171 * 265.59194 * 6 5 3 8 8 H 1.08004 * 119.99896 * 22.37439 * 7 6 5 9 9 C 1.38810 * 120.00217 * 202.36795 * 7 6 5 10 10 N 1.31619 * 120.00184 * 20.48724 * 9 7 6 11 11 Si 1.86801 * 120.00325 * 200.48484 * 9 7 6 12 12 H 1.48506 * 109.46640 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47258 * 119.99879 * 11 9 7 14 14 H 1.48497 * 109.47351 * 240.00229 * 11 9 7 15 15 C 1.46500 * 119.99675 * 85.60015 * 6 5 3 16 16 C 1.50698 * 109.47728 * 84.22812 * 15 6 5 17 17 O 1.21278 * 119.99688 * 354.53222 * 16 15 6 18 18 N 1.34774 * 120.00285 * 174.52942 * 16 15 6 19 19 C 1.46504 * 120.00070 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46642 * 179.97438 * 19 18 16 21 21 C 1.52992 * 109.47645 * 65.00087 * 20 19 18 22 22 C 1.52999 * 109.47766 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47024 * 300.00083 * 22 21 20 24 24 C 1.53003 * 109.46908 * 59.99734 * 23 22 21 25 25 C 1.53000 * 109.46638 * 184.99861 * 20 19 18 26 26 H 1.09007 * 109.46839 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47312 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.47236 * 60.00273 * 1 2 3 29 29 H 1.08996 * 109.47259 * 65.31894 * 5 3 2 30 30 H 1.09002 * 109.47320 * 305.32527 * 5 3 2 31 31 H 0.96998 * 120.00576 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47046 * 324.22316 * 15 6 5 33 33 H 1.09007 * 109.46849 * 204.23270 * 15 6 5 34 34 H 0.97006 * 119.99629 * 359.97438 * 18 16 15 35 35 H 1.09000 * 109.47048 * 59.99824 * 19 18 16 36 36 H 1.08994 * 109.46787 * 299.99706 * 19 18 16 37 37 H 1.08995 * 109.47399 * 304.99260 * 20 19 18 38 38 H 1.09000 * 109.47015 * 299.99946 * 21 20 19 39 39 H 1.09004 * 109.47310 * 59.99017 * 21 20 19 40 40 H 1.08998 * 109.47563 * 179.97438 * 22 21 20 41 41 H 1.09007 * 109.46608 * 59.99637 * 22 21 20 42 42 H 1.08993 * 109.47051 * 299.99862 * 23 22 21 43 43 H 1.09000 * 109.46776 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46886 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47676 * 60.00265 * 24 23 22 46 46 H 1.09006 * 109.47381 * 300.00097 * 25 20 19 47 47 H 1.09007 * 109.47350 * 59.99769 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9820 2.6738 0.1276 7 6 4.2575 3.4116 -0.9926 8 1 3.8426 3.1206 -1.9464 9 6 5.0698 4.5336 -0.9023 10 7 5.8884 4.6730 0.1189 11 14 5.0012 5.8457 -2.2301 12 1 4.0068 5.4547 -3.2614 13 1 4.6025 7.1419 -1.6250 14 1 6.3393 5.9839 -2.8591 15 6 4.1031 3.2833 1.4543 16 6 5.4567 2.9615 2.0334 17 8 6.2042 2.2087 1.4457 18 7 5.8365 3.5102 3.2043 19 6 7.1526 3.1978 3.7669 20 6 7.3322 3.9454 5.0897 21 6 6.3207 3.4235 6.1120 22 6 6.5006 4.1706 7.4350 23 6 7.9197 3.9436 7.9599 24 6 8.9313 4.4657 6.9376 25 6 8.7512 3.7189 5.6149 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9512 0.8656 -0.9346 30 1 3.9606 0.7004 0.8376 31 1 6.4558 5.4572 0.1822 32 1 3.3252 2.8886 2.1078 33 1 3.9920 4.3643 1.3690 34 1 5.2387 4.1127 3.6741 35 1 7.9294 3.5063 3.0672 36 1 7.2271 2.1247 3.9426 37 1 7.1699 5.0113 4.9296 38 1 5.3097 3.5848 5.7378 39 1 6.4829 2.3575 6.2721 40 1 5.7797 3.7990 8.1631 41 1 6.3386 5.2366 7.2751 42 1 8.0818 2.8777 8.1197 43 1 8.0480 4.4763 8.9022 44 1 9.9423 4.3035 7.3114 45 1 8.7693 5.5316 6.7778 46 1 8.9136 2.6529 5.7750 47 1 9.4720 4.0907 4.8865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -118.021909 kcal Electronic energy + Delta-G solvation = -26961.412429 eV Core-core repulsion = 23144.407595 eV Total energy + Delta-G solvation = -3817.004835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.63462 -39.05311 -37.88714 -35.98732 -34.90250 -33.77510 -31.42533 -31.01984 -30.65397 -28.59662 -27.26688 -26.03900 -24.93094 -22.67915 -22.32110 -21.07411 -20.10751 -19.81956 -19.18278 -17.02932 -16.91031 -16.19084 -15.74299 -15.60363 -15.15426 -15.07736 -14.83585 -14.49139 -14.13608 -13.95870 -13.72164 -13.51367 -13.07346 -12.97016 -12.67339 -12.43544 -12.22714 -12.14275 -11.93507 -11.61917 -11.51261 -11.37059 -11.15856 -10.98774 -10.95117 -10.72788 -10.46421 -10.38170 -10.25716 -10.13297 -10.06107 -10.02576 -9.96774 -9.77019 -8.86258 -8.31563 -7.96070 -6.94967 -5.87385 -3.25760 3.04956 3.31070 3.40846 3.45822 3.50194 4.15527 4.32179 4.52512 4.65016 4.72364 4.75702 5.15487 5.23791 5.32889 5.34580 5.37490 5.41150 5.46428 5.46597 5.48577 5.49379 5.61069 5.61763 5.86423 5.90262 5.94795 5.96281 6.05352 6.10801 6.15168 6.17342 6.21634 6.28348 6.32982 6.36235 6.48291 6.56688 6.76726 6.93848 7.05829 7.52911 7.73626 8.15578 8.60432 8.66891 9.05553 9.64376 9.79832 10.13790 11.21479 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003819 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.871054 B = 7329.722414 C = 9071.385154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.419 3.581 4 O -0.499 6.499 5 C 0.161 3.839 6 N -0.540 5.540 7 C -0.260 4.260 8 H 0.074 0.926 9 C 0.011 3.989 10 N -0.886 5.886 11 Si 0.908 3.092 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.164 3.836 16 C 0.532 3.468 17 O -0.532 6.532 18 N -0.747 5.747 19 C 0.135 3.865 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.112 4.112 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.254 0.746 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.385 0.615 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -3.377 13.704 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.292 6.292 3 C 0.258 3.742 4 O -0.385 6.385 5 C 0.029 3.971 6 N -0.257 5.257 7 C -0.389 4.389 8 H 0.092 0.908 9 C -0.189 4.189 10 N -0.529 5.529 11 Si 0.737 3.263 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.218 1.218 15 C 0.034 3.966 16 C 0.318 3.682 17 O -0.406 6.406 18 N -0.402 5.402 19 C 0.011 3.989 20 C -0.116 4.116 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.150 4.150 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.217 0.783 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.062 -3.479 13.233 13.683 hybrid contribution -0.415 1.300 -0.437 1.433 sum -0.478 -2.180 12.796 12.989 Atomic orbital electron populations 1.23051 0.78802 1.02357 1.01800 1.86616 1.21807 1.35830 1.84961 1.26987 0.94824 0.80621 0.71739 1.90582 1.67004 1.36452 1.44431 1.20363 0.84238 0.88871 1.03622 1.43296 1.73814 1.06019 1.02539 1.19159 1.24923 1.06675 0.88153 0.90811 1.24880 0.95622 1.00248 0.98122 1.69874 1.23106 1.28093 1.31825 0.86150 0.77262 0.81684 0.81173 1.20228 1.21530 1.21787 1.20424 0.90592 1.00146 0.85452 1.21614 0.90562 0.78215 0.77763 1.90501 1.54599 1.37348 1.58152 1.46064 1.17593 1.51699 1.24850 1.21053 0.86910 0.98287 0.92687 1.21383 0.95194 1.00533 0.94464 1.21584 0.99162 0.99882 0.94446 1.21543 0.96477 1.00606 0.97091 1.21536 0.95127 1.01044 0.97960 1.21514 0.98625 1.00041 0.95385 1.21495 0.96255 1.00637 0.96588 0.89221 0.92749 0.92657 0.88358 0.90077 0.93540 0.94336 0.88737 0.78253 0.92395 0.93079 0.90824 0.91746 0.91993 0.92305 0.92097 0.92139 0.92487 0.92270 0.92079 0.91885 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.53 16 2 O -0.38 -6.50 10.57 -39.26 -0.41 -6.91 16 3 C 0.42 8.55 8.02 36.01 0.29 8.84 16 4 O -0.50 -11.63 16.19 -18.75 -0.30 -11.94 16 5 C 0.16 3.42 6.14 -5.20 -0.03 3.39 16 6 N -0.54 -13.52 1.54 -175.99 -0.27 -13.79 16 7 C -0.26 -7.15 9.59 -15.06 -0.14 -7.30 16 8 H 0.07 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 10 N -0.89 -24.65 9.34 55.49 0.52 -24.13 16 11 Si 0.91 21.89 29.60 -169.99 -5.03 16.86 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C 0.16 3.80 5.40 -5.19 -0.03 3.77 16 16 C 0.53 12.18 5.77 -10.99 -0.06 12.12 16 17 O -0.53 -14.31 15.97 5.56 0.09 -14.22 16 18 N -0.75 -13.59 5.28 -60.30 -0.32 -13.91 16 19 C 0.14 2.21 5.07 -4.04 -0.02 2.19 16 20 C -0.10 -1.18 2.23 -90.62 -0.20 -1.38 16 21 C -0.11 -1.23 5.08 -26.74 -0.14 -1.36 16 22 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 23 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 24 C -0.12 -1.09 5.92 -26.75 -0.16 -1.25 16 25 C -0.11 -1.21 5.20 -26.75 -0.14 -1.35 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.10 2.03 8.00 -51.93 -0.42 1.61 16 30 H 0.08 1.63 8.11 -51.93 -0.42 1.21 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.09 2.34 6.77 -51.93 -0.35 1.99 16 34 H 0.39 6.05 7.66 -40.82 -0.31 5.73 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.71 7.18 -51.93 -0.37 0.34 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -33.10 379.63 -8.17 -41.27 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.19 Total: 4.11 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 0.03 Total: 16.94 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.07 Total: -51.83 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.63 Total: -33.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.10 -8.17 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.754 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds