Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00014 * 2 1 4 4 O 1.20824 * 119.99920 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00115 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47079 * 185.31991 * 5 3 2 7 7 C 1.36932 * 120.00171 * 265.59194 * 6 5 3 8 8 H 1.08004 * 119.99896 * 22.37439 * 7 6 5 9 9 C 1.38810 * 120.00217 * 202.36795 * 7 6 5 10 10 N 1.31619 * 120.00184 * 20.48724 * 9 7 6 11 11 Si 1.86801 * 120.00325 * 200.48484 * 9 7 6 12 12 H 1.48506 * 109.46640 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47258 * 119.99879 * 11 9 7 14 14 H 1.48497 * 109.47351 * 240.00229 * 11 9 7 15 15 C 1.46500 * 119.99675 * 85.60015 * 6 5 3 16 16 C 1.50698 * 109.47728 * 84.22812 * 15 6 5 17 17 O 1.21278 * 119.99688 * 354.53222 * 16 15 6 18 18 N 1.34774 * 120.00285 * 174.52942 * 16 15 6 19 19 C 1.46504 * 120.00070 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46642 * 179.97438 * 19 18 16 21 21 C 1.52992 * 109.47645 * 65.00087 * 20 19 18 22 22 C 1.52999 * 109.47766 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47024 * 300.00083 * 22 21 20 24 24 C 1.53003 * 109.46908 * 59.99734 * 23 22 21 25 25 C 1.53000 * 109.46638 * 184.99861 * 20 19 18 26 26 H 1.09007 * 109.46839 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47312 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.47236 * 60.00273 * 1 2 3 29 29 H 1.08996 * 109.47259 * 65.31894 * 5 3 2 30 30 H 1.09002 * 109.47320 * 305.32527 * 5 3 2 31 31 H 0.96998 * 120.00576 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47046 * 324.22316 * 15 6 5 33 33 H 1.09007 * 109.46849 * 204.23270 * 15 6 5 34 34 H 0.97006 * 119.99629 * 359.97438 * 18 16 15 35 35 H 1.09000 * 109.47048 * 59.99824 * 19 18 16 36 36 H 1.08994 * 109.46787 * 299.99706 * 19 18 16 37 37 H 1.08995 * 109.47399 * 304.99260 * 20 19 18 38 38 H 1.09000 * 109.47015 * 299.99946 * 21 20 19 39 39 H 1.09004 * 109.47310 * 59.99017 * 21 20 19 40 40 H 1.08998 * 109.47563 * 179.97438 * 22 21 20 41 41 H 1.09007 * 109.46608 * 59.99637 * 22 21 20 42 42 H 1.08993 * 109.47051 * 299.99862 * 23 22 21 43 43 H 1.09000 * 109.46776 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46886 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47676 * 60.00265 * 24 23 22 46 46 H 1.09006 * 109.47381 * 300.00097 * 25 20 19 47 47 H 1.09007 * 109.47350 * 59.99769 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9820 2.6738 0.1276 7 6 4.2575 3.4116 -0.9926 8 1 3.8426 3.1206 -1.9464 9 6 5.0698 4.5336 -0.9023 10 7 5.8884 4.6730 0.1189 11 14 5.0012 5.8457 -2.2301 12 1 4.0068 5.4547 -3.2614 13 1 4.6025 7.1419 -1.6250 14 1 6.3393 5.9839 -2.8591 15 6 4.1031 3.2833 1.4543 16 6 5.4567 2.9615 2.0334 17 8 6.2042 2.2087 1.4457 18 7 5.8365 3.5102 3.2043 19 6 7.1526 3.1978 3.7669 20 6 7.3322 3.9454 5.0897 21 6 6.3207 3.4235 6.1120 22 6 6.5006 4.1706 7.4350 23 6 7.9197 3.9436 7.9599 24 6 8.9313 4.4657 6.9376 25 6 8.7512 3.7189 5.6149 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9512 0.8656 -0.9346 30 1 3.9606 0.7004 0.8376 31 1 6.4558 5.4572 0.1822 32 1 3.3252 2.8886 2.1078 33 1 3.9920 4.3643 1.3690 34 1 5.2387 4.1127 3.6741 35 1 7.9294 3.5063 3.0672 36 1 7.2271 2.1247 3.9426 37 1 7.1699 5.0113 4.9296 38 1 5.3097 3.5848 5.7378 39 1 6.4829 2.3575 6.2721 40 1 5.7797 3.7990 8.1631 41 1 6.3386 5.2366 7.2751 42 1 8.0818 2.8777 8.1197 43 1 8.0480 4.4763 8.9022 44 1 9.9423 4.3035 7.3114 45 1 8.7693 5.5316 6.7778 46 1 8.9136 2.6529 5.7750 47 1 9.4720 4.0907 4.8865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -137.678846 kcal Electronic energy + Delta-G solvation = -26962.264818 eV Core-core repulsion = 23144.407595 eV Total energy + Delta-G solvation = -3817.857223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.22678 -40.36865 -39.27691 -37.58879 -36.64415 -35.29526 -33.42031 -32.18195 -31.55078 -30.18011 -28.82699 -27.63850 -26.27959 -24.16061 -23.44382 -22.12621 -21.70449 -21.11987 -20.49314 -18.92818 -18.51316 -17.75195 -17.27331 -17.21753 -16.73779 -16.51497 -16.23467 -15.80436 -15.46202 -15.22848 -14.91787 -14.84362 -14.60264 -14.37652 -14.20317 -13.94075 -13.57327 -13.31846 -13.04470 -12.96031 -12.87648 -12.82640 -12.62760 -12.56287 -12.27275 -12.10912 -11.96313 -11.92570 -11.81854 -11.64524 -11.51161 -11.30364 -10.99969 -10.87928 -10.79795 -10.27224 -9.60086 -8.89407 -7.93283 -5.33380 1.41498 1.44144 1.47463 1.57804 1.90172 2.39856 2.52279 2.79955 3.27778 3.51492 3.74648 3.85526 3.90467 4.20990 4.27875 4.36785 4.38735 4.40329 4.41625 4.47441 4.49411 4.58953 4.64203 4.65747 4.68135 4.73739 4.76959 4.85712 4.89201 5.02261 5.08435 5.11527 5.21277 5.30311 5.32845 5.34658 5.43054 5.50601 5.52359 5.60480 5.63486 5.99070 6.19112 6.91159 7.03109 7.13633 7.67969 8.00961 8.14004 9.12907 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003819 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.871054 B = 7329.722414 C = 9071.385154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.433 3.567 4 O -0.531 6.531 5 C 0.158 3.842 6 N -0.560 5.560 7 C -0.273 4.273 8 H 0.065 0.935 9 C -0.033 4.033 10 N -0.902 5.902 11 Si 0.966 3.034 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.295 1.295 15 C 0.167 3.833 16 C 0.534 3.466 17 O -0.577 6.577 18 N -0.732 5.732 19 C 0.140 3.860 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.111 4.111 26 H 0.133 0.867 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.399 0.601 35 H 0.027 0.973 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -3.637 15.227 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.274 3.726 4 O -0.419 6.419 5 C 0.028 3.972 6 N -0.277 5.277 7 C -0.402 4.402 8 H 0.083 0.917 9 C -0.230 4.230 10 N -0.546 5.546 11 Si 0.795 3.205 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.222 1.222 15 C 0.038 3.962 16 C 0.320 3.680 17 O -0.455 6.455 18 N -0.386 5.386 19 C 0.016 3.984 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.149 4.149 26 H 0.151 0.849 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.871 -3.756 14.798 15.292 hybrid contribution -0.254 1.250 -0.905 1.564 sum -1.125 -2.506 13.894 14.163 Atomic orbital electron populations 1.23443 0.76001 1.05246 1.01883 1.86558 1.24318 1.33643 1.84181 1.26319 0.94317 0.80954 0.71025 1.90572 1.67584 1.37668 1.46100 1.20418 0.85027 0.87462 1.04263 1.43407 1.74659 1.07219 1.02459 1.19310 1.24671 1.07422 0.88809 0.91675 1.25518 0.95594 1.01745 1.00158 1.70013 1.23512 1.28017 1.33079 0.85252 0.76749 0.79464 0.79068 1.19995 1.21237 1.22203 1.20385 0.91463 0.98976 0.85414 1.21559 0.90175 0.77775 0.78444 1.90470 1.55691 1.39532 1.59828 1.45865 1.18430 1.50715 1.23612 1.21096 0.84808 0.98562 0.93983 1.21290 0.96860 0.99662 0.92582 1.21559 0.98306 1.00014 0.94949 1.21526 0.97296 1.00411 0.96168 1.21542 0.94349 1.01367 0.98277 1.21498 0.99631 0.99716 0.94378 1.21495 0.94882 1.01076 0.97489 0.84939 0.92469 0.92872 0.88149 0.88912 0.94175 0.92112 0.90712 0.76605 0.95440 0.93555 0.91023 0.92037 0.92132 0.91148 0.91954 0.91960 0.91029 0.91090 0.92057 0.91740 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -12.15 10.57 -51.43 -0.54 -12.69 16 3 C 0.43 17.35 8.02 71.24 0.57 17.92 16 4 O -0.53 -24.52 16.19 21.97 0.36 -24.16 16 5 C 0.16 6.76 6.14 85.63 0.53 7.29 16 6 N -0.56 -28.38 1.54 -710.69 -1.10 -29.47 16 7 C -0.27 -15.23 9.59 84.03 0.81 -14.42 16 8 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 9 C -0.03 -1.83 4.85 84.86 0.41 -1.42 16 10 N -0.90 -51.19 9.34 21.65 0.20 -50.99 16 11 Si 0.97 45.67 29.60 68.60 2.03 47.70 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 C 0.17 7.85 5.40 85.63 0.46 8.31 16 16 C 0.53 24.85 5.77 87.66 0.51 25.35 16 17 O -0.58 -31.83 15.97 -3.02 -0.05 -31.88 16 18 N -0.73 -26.88 5.28 -463.07 -2.45 -29.33 16 19 C 0.14 4.65 5.07 86.38 0.44 5.08 16 20 C -0.09 -2.02 2.23 -10.80 -0.02 -2.05 16 21 C -0.11 -2.23 5.08 30.59 0.16 -2.08 16 22 C -0.12 -1.88 5.92 30.59 0.18 -1.70 16 23 C -0.12 -1.75 5.92 30.60 0.18 -1.57 16 24 C -0.11 -1.89 5.92 30.58 0.18 -1.71 16 25 C -0.11 -2.32 5.20 30.58 0.16 -2.16 16 26 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.10 4.18 8.00 -2.39 -0.02 4.16 16 30 H 0.09 3.71 8.11 -2.39 -0.02 3.69 16 31 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.06 2.51 8.11 -2.39 -0.02 2.49 16 33 H 0.07 3.78 6.77 -2.38 -0.02 3.77 16 34 H 0.40 12.42 7.66 -92.70 -0.71 11.71 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.27 7.18 -2.39 -0.02 1.25 16 39 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -72.00 379.63 4.44 -67.56 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.23 Total: 24.54 kcal Atomic # 6 Polarization: 32.98 SS G_CDS: 5.75 Total: 38.73 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -3.34 Total: -109.80 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -0.24 Total: -68.74 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.00 4.44 -67.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.117 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds