Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47455 * 2 1 4 4 C 1.52996 * 109.46997 * 239.99596 * 2 1 3 5 5 C 1.52999 * 109.46783 * 119.99899 * 2 1 3 6 6 N 1.46905 * 109.47281 * 35.56553 * 5 2 1 7 7 C 1.46897 * 111.00129 * 288.35368 * 6 5 2 8 8 C 1.50698 * 109.46937 * 314.49000 * 7 6 5 9 9 H 1.07998 * 120.00635 * 4.68318 * 8 7 6 10 10 C 1.37884 * 119.99686 * 184.68800 * 8 7 6 11 11 N 1.31513 * 119.99989 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99556 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47461 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46749 * 120.00295 * 12 10 8 15 15 H 1.48502 * 109.46895 * 239.99715 * 12 10 8 16 16 C 1.46901 * 110.99789 * 52.31124 * 6 5 2 17 17 C 1.52997 * 109.47480 * 60.69648 * 16 6 5 18 18 H 1.09003 * 109.46811 * 304.99478 * 17 16 6 19 19 O 1.42898 * 109.47412 * 64.99785 * 17 16 6 20 20 C 1.53000 * 109.47095 * 185.00072 * 17 16 6 21 21 N 1.46497 * 109.47286 * 179.97438 * 20 17 16 22 22 C 1.46756 * 124.35265 * 270.19771 * 21 20 17 23 23 C 1.54480 * 105.53657 * 163.21158 * 22 21 20 24 24 C 1.54629 * 101.76504 * 25.20862 * 23 22 21 25 25 C 1.34427 * 124.34921 * 90.02312 * 21 20 17 26 26 O 1.21282 * 124.93703 * 0.42685 * 25 21 20 27 27 H 1.08996 * 109.46953 * 298.28033 * 1 2 3 28 28 H 1.09001 * 109.46690 * 58.27634 * 1 2 3 29 29 H 1.09001 * 109.47239 * 178.27666 * 1 2 3 30 30 H 1.08997 * 109.47429 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46969 * 300.00284 * 3 2 1 32 32 H 1.08999 * 109.47155 * 59.99353 * 3 2 1 33 33 H 1.09000 * 109.47343 * 324.39091 * 4 2 1 34 34 H 1.09007 * 109.46900 * 84.39222 * 4 2 1 35 35 H 1.09000 * 109.47376 * 204.38839 * 4 2 1 36 36 H 1.08994 * 109.47500 * 275.56304 * 5 2 1 37 37 H 1.09004 * 109.47116 * 155.56579 * 5 2 1 38 38 H 1.09001 * 109.46964 * 74.48637 * 7 6 5 39 39 H 1.08991 * 109.47284 * 194.48388 * 7 6 5 40 40 H 0.97006 * 119.99475 * 179.97438 * 11 10 8 41 41 H 1.09005 * 109.46910 * 300.69505 * 16 6 5 42 42 H 1.09001 * 109.46905 * 180.69872 * 16 6 5 43 43 H 0.96705 * 113.99536 * 60.00158 * 19 17 16 44 44 H 1.09001 * 109.47362 * 60.00118 * 20 17 16 45 45 H 1.08997 * 109.47433 * 300.00026 * 20 17 16 46 46 H 1.09005 * 110.38796 * 44.10351 * 22 21 20 47 47 H 1.08998 * 110.11636 * 282.18267 * 22 21 20 48 48 H 1.09004 * 110.97047 * 267.09204 * 23 22 21 49 49 H 1.08997 * 110.97179 * 143.33091 * 23 22 21 50 50 H 1.08998 * 110.48464 * 216.53106 * 24 23 22 51 51 H 1.08993 * 110.59636 * 93.93362 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1410 -1.8375 1.5715 7 6 -0.1411 -1.3468 2.0944 8 6 0.1128 -0.2696 3.1173 9 1 1.1200 0.0746 3.3005 10 6 -0.9407 0.2765 3.8193 11 7 -2.1672 -0.1423 3.5960 12 14 -0.6258 1.6114 5.0877 13 1 0.8290 1.9027 5.1490 14 1 -1.3611 2.8429 4.7031 15 1 -1.0954 1.1499 6.4188 16 6 0.9361 -2.7029 0.4023 17 6 2.2790 -3.2859 -0.0423 18 1 2.9859 -2.4755 -0.2200 19 8 2.7869 -4.1456 0.9799 20 6 2.0857 -4.0859 -1.3320 21 7 3.3716 -4.6437 -1.7581 22 6 4.3174 -3.9591 -2.6473 23 6 5.6621 -4.6982 -2.4689 24 6 5.1940 -6.0971 -2.0052 25 6 3.8384 -5.8469 -1.3821 26 8 3.2552 -6.6214 -0.6535 27 1 -0.3633 0.4869 0.9050 28 1 -0.3633 0.5404 -0.8742 29 1 -0.3634 -1.0272 -0.0309 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.3734 -1.5501 -1.4878 34 1 2.0664 -0.0236 -2.0863 35 1 3.0436 -1.1041 -1.0635 36 1 2.0672 -0.0234 2.0861 37 1 3.0432 -1.1048 1.0633 38 1 -0.7347 -0.9385 1.2765 39 1 -0.6824 -2.1700 2.5605 40 1 -2.9084 0.2417 4.0902 41 1 0.5065 -2.1185 -0.4114 42 1 0.2570 -3.5140 0.6651 43 1 2.2080 -4.8910 1.1905 44 1 1.6983 -3.4302 -2.1118 45 1 1.3787 -4.8963 -1.1545 46 1 4.4208 -2.9131 -2.3587 47 1 3.9805 -4.0331 -3.6812 48 1 6.2728 -4.2180 -1.7042 49 1 6.2013 -4.7607 -3.4141 50 1 5.8840 -6.5048 -1.2665 51 1 5.1040 -6.7727 -2.8558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096417883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -23.912488 kcal Electronic energy + Delta-G solvation = -28845.217268 eV Core-core repulsion = 25168.126419 eV Total energy + Delta-G solvation = -3677.090849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.57135 -39.68590 -36.69875 -36.22789 -33.74279 -32.83539 -32.32198 -30.05394 -27.90953 -27.70755 -26.99257 -26.39778 -25.61402 -23.98234 -22.12987 -21.50692 -20.20263 -19.44921 -18.44916 -17.03957 -16.86253 -16.44475 -15.83595 -15.59458 -15.33687 -14.95266 -14.47069 -14.19721 -14.03215 -13.94923 -13.82404 -13.43718 -13.18982 -12.94421 -12.74062 -12.57375 -12.34299 -12.13305 -11.91297 -11.63290 -11.50269 -11.28051 -11.22408 -11.15425 -11.01383 -10.78225 -10.71600 -10.68065 -10.39459 -10.21822 -10.03993 -9.84573 -9.69579 -9.61930 -9.43341 -8.86567 -8.54383 -8.42877 -6.76373 -6.02730 -4.01467 2.59803 2.93881 3.29804 3.38389 3.41869 4.19617 4.26242 4.42105 4.57170 4.67907 4.82556 4.87316 5.07789 5.19136 5.22128 5.29805 5.32579 5.33864 5.35977 5.42972 5.46978 5.57311 5.58266 5.62808 5.73037 5.76154 5.86455 6.00984 6.04890 6.09652 6.13139 6.30425 6.33473 6.43978 6.48055 6.51181 6.56962 6.75294 6.82413 6.96882 7.09678 7.26978 7.45808 7.53608 7.80450 8.09445 8.16166 8.18939 8.33010 8.65081 9.06086 9.61097 11.08224 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.003713 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.478026 B = 7539.025421 C = 8135.502997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.155 4.155 5 C 0.064 3.936 6 N -0.519 5.519 7 C 0.145 3.855 8 C -0.506 4.506 9 H 0.066 0.934 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.003 3.997 17 C 0.087 3.913 18 H 0.108 0.892 19 O -0.543 6.543 20 C 0.090 3.910 21 N -0.611 5.611 22 C 0.101 3.899 23 C -0.131 4.131 24 C -0.155 4.155 25 C 0.521 3.479 26 O -0.530 6.530 27 H 0.099 0.901 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.023 0.977 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.371 0.629 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.100 0.900 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.671 -5.000 -16.617 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.211 4.211 5 C -0.064 4.064 6 N -0.241 5.241 7 C 0.021 3.979 8 C -0.544 4.544 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.126 4.126 17 C 0.026 3.974 18 H 0.125 0.875 19 O -0.347 6.347 20 C -0.033 4.033 21 N -0.345 5.345 22 C -0.023 4.023 23 C -0.169 4.169 24 C -0.196 4.196 25 C 0.308 3.692 26 O -0.406 6.406 27 H 0.118 0.882 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.217 0.783 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.118 0.882 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.807 -5.224 -15.775 20.980 hybrid contribution -0.873 0.973 0.043 1.308 sum 11.935 -4.251 -15.732 20.199 Atomic orbital electron populations 1.22961 0.94178 1.02411 1.02442 1.21211 0.96658 0.95581 0.96224 1.21820 0.99804 0.96025 1.01490 1.22604 1.00341 1.00334 0.97869 1.22420 0.94837 0.93128 0.96062 1.62235 1.16668 1.18408 1.26816 1.20859 0.85671 0.95398 0.95960 1.21326 0.93366 1.19083 1.20619 0.91651 1.24948 0.95148 0.97193 0.97053 1.69967 0.98661 1.42858 1.42016 0.86570 0.78313 0.81686 0.81649 1.19733 1.21216 1.21086 1.23202 0.95944 0.98172 0.95234 1.22713 0.96912 0.92152 0.85635 0.87483 1.86560 1.49438 1.41477 1.57217 1.22255 0.84143 0.98919 0.98006 1.48095 1.19626 1.18436 1.48313 1.22070 0.88729 0.97547 0.93916 1.22578 0.96582 0.94807 1.02941 1.22313 0.95974 0.98681 1.02590 1.20776 0.87472 0.81029 0.79900 1.90704 1.63786 1.49418 1.36738 0.88228 0.95504 0.90861 0.93584 0.93766 0.92109 0.91988 0.93649 0.92970 0.88817 0.93291 0.94088 0.95885 0.93095 0.92230 0.91801 0.78257 0.89788 0.89829 0.90387 0.91251 0.89854 0.89357 0.88181 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 6.18 37.16 0.23 -2.79 16 2 C -0.09 -1.53 0.77 -154.51 -0.12 -1.65 16 3 C -0.13 -2.01 8.22 37.16 0.31 -1.71 16 4 C -0.15 -2.00 7.18 37.16 0.27 -1.73 16 5 C 0.06 1.21 4.54 -3.82 -0.02 1.19 16 6 N -0.52 -10.70 4.85 -236.07 -1.14 -11.85 16 7 C 0.15 3.56 4.23 -4.98 -0.02 3.54 16 8 C -0.51 -13.46 7.33 -34.44 -0.25 -13.71 16 9 H 0.07 1.74 5.52 -52.49 -0.29 1.45 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.00 0.06 3.66 -3.82 -0.01 0.04 16 17 C 0.09 1.26 2.14 -26.73 -0.06 1.20 16 18 H 0.11 1.59 3.67 -51.93 -0.19 1.40 16 19 O -0.54 -9.38 12.57 -35.23 -0.44 -9.83 16 20 C 0.09 1.07 5.51 -4.04 -0.02 1.05 16 21 N -0.61 -6.84 2.86 -172.42 -0.49 -7.34 16 22 C 0.10 0.77 7.35 -3.13 -0.02 0.74 16 23 C -0.13 -0.82 7.18 -25.10 -0.18 -1.00 16 24 C -0.16 -1.30 6.86 -26.74 -0.18 -1.48 16 25 C 0.52 6.73 7.57 -10.86 -0.08 6.64 16 26 O -0.53 -9.01 17.42 5.56 0.10 -8.91 16 27 H 0.10 2.24 5.49 -51.93 -0.29 1.95 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.38 3.28 -51.93 -0.17 1.21 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.06 0.77 3.55 -51.93 -0.18 0.59 16 34 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 35 H 0.05 0.63 5.71 -51.93 -0.30 0.34 16 36 H 0.09 2.01 4.96 -51.93 -0.26 1.75 16 37 H 0.05 0.88 6.25 -51.93 -0.32 0.56 16 38 H 0.04 1.01 3.27 -60.81 -0.20 0.81 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 41 H 0.06 0.95 2.69 -51.93 -0.14 0.81 16 42 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 43 H 0.37 6.08 9.05 45.56 0.41 6.49 16 44 H 0.08 0.84 6.94 -51.93 -0.36 0.48 16 45 H 0.08 1.08 7.92 -51.93 -0.41 0.66 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -31.76 368.18 -8.30 -40.06 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.31 Total: 9.30 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.27 Total: -8.17 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.90 Total: -44.25 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.35 Total: -18.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.76 -8.30 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096417883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.152 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds