Wall clock time and date at job start Fri Apr 10 2020 18:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47455 * 2 1 4 4 C 1.52996 * 109.46997 * 239.99596 * 2 1 3 5 5 C 1.52999 * 109.46783 * 119.99899 * 2 1 3 6 6 N 1.46905 * 109.47281 * 35.56553 * 5 2 1 7 7 C 1.46897 * 111.00129 * 288.35368 * 6 5 2 8 8 C 1.50698 * 109.46937 * 314.49000 * 7 6 5 9 9 H 1.07998 * 120.00635 * 4.68318 * 8 7 6 10 10 C 1.37884 * 119.99686 * 184.68800 * 8 7 6 11 11 N 1.31513 * 119.99989 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99556 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47461 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46749 * 120.00295 * 12 10 8 15 15 H 1.48502 * 109.46895 * 239.99715 * 12 10 8 16 16 C 1.46901 * 110.99789 * 52.31124 * 6 5 2 17 17 C 1.52997 * 109.47480 * 60.69648 * 16 6 5 18 18 H 1.09003 * 109.46811 * 304.99478 * 17 16 6 19 19 O 1.42898 * 109.47412 * 64.99785 * 17 16 6 20 20 C 1.53000 * 109.47095 * 185.00072 * 17 16 6 21 21 N 1.46497 * 109.47286 * 179.97438 * 20 17 16 22 22 C 1.46756 * 124.35265 * 270.19771 * 21 20 17 23 23 C 1.54480 * 105.53657 * 163.21158 * 22 21 20 24 24 C 1.54629 * 101.76504 * 25.20862 * 23 22 21 25 25 C 1.34427 * 124.34921 * 90.02312 * 21 20 17 26 26 O 1.21282 * 124.93703 * 0.42685 * 25 21 20 27 27 H 1.08996 * 109.46953 * 298.28033 * 1 2 3 28 28 H 1.09001 * 109.46690 * 58.27634 * 1 2 3 29 29 H 1.09001 * 109.47239 * 178.27666 * 1 2 3 30 30 H 1.08997 * 109.47429 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46969 * 300.00284 * 3 2 1 32 32 H 1.08999 * 109.47155 * 59.99353 * 3 2 1 33 33 H 1.09000 * 109.47343 * 324.39091 * 4 2 1 34 34 H 1.09007 * 109.46900 * 84.39222 * 4 2 1 35 35 H 1.09000 * 109.47376 * 204.38839 * 4 2 1 36 36 H 1.08994 * 109.47500 * 275.56304 * 5 2 1 37 37 H 1.09004 * 109.47116 * 155.56579 * 5 2 1 38 38 H 1.09001 * 109.46964 * 74.48637 * 7 6 5 39 39 H 1.08991 * 109.47284 * 194.48388 * 7 6 5 40 40 H 0.97006 * 119.99475 * 179.97438 * 11 10 8 41 41 H 1.09005 * 109.46910 * 300.69505 * 16 6 5 42 42 H 1.09001 * 109.46905 * 180.69872 * 16 6 5 43 43 H 0.96705 * 113.99536 * 60.00158 * 19 17 16 44 44 H 1.09001 * 109.47362 * 60.00118 * 20 17 16 45 45 H 1.08997 * 109.47433 * 300.00026 * 20 17 16 46 46 H 1.09005 * 110.38796 * 44.10351 * 22 21 20 47 47 H 1.08998 * 110.11636 * 282.18267 * 22 21 20 48 48 H 1.09004 * 110.97047 * 267.09204 * 23 22 21 49 49 H 1.08997 * 110.97179 * 143.33091 * 23 22 21 50 50 H 1.08998 * 110.48464 * 216.53106 * 24 23 22 51 51 H 1.08993 * 110.59636 * 93.93362 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1410 -1.8375 1.5715 7 6 -0.1411 -1.3468 2.0944 8 6 0.1128 -0.2696 3.1173 9 1 1.1200 0.0746 3.3005 10 6 -0.9407 0.2765 3.8193 11 7 -2.1672 -0.1423 3.5960 12 14 -0.6258 1.6114 5.0877 13 1 0.8290 1.9027 5.1490 14 1 -1.3611 2.8429 4.7031 15 1 -1.0954 1.1499 6.4188 16 6 0.9361 -2.7029 0.4023 17 6 2.2790 -3.2859 -0.0423 18 1 2.9859 -2.4755 -0.2200 19 8 2.7869 -4.1456 0.9799 20 6 2.0857 -4.0859 -1.3320 21 7 3.3716 -4.6437 -1.7581 22 6 4.3174 -3.9591 -2.6473 23 6 5.6621 -4.6982 -2.4689 24 6 5.1940 -6.0971 -2.0052 25 6 3.8384 -5.8469 -1.3821 26 8 3.2552 -6.6214 -0.6535 27 1 -0.3633 0.4869 0.9050 28 1 -0.3633 0.5404 -0.8742 29 1 -0.3634 -1.0272 -0.0309 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.3734 -1.5501 -1.4878 34 1 2.0664 -0.0236 -2.0863 35 1 3.0436 -1.1041 -1.0635 36 1 2.0672 -0.0234 2.0861 37 1 3.0432 -1.1048 1.0633 38 1 -0.7347 -0.9385 1.2765 39 1 -0.6824 -2.1700 2.5605 40 1 -2.9084 0.2417 4.0902 41 1 0.5065 -2.1185 -0.4114 42 1 0.2570 -3.5140 0.6651 43 1 2.2080 -4.8910 1.1905 44 1 1.6983 -3.4302 -2.1118 45 1 1.3787 -4.8963 -1.1545 46 1 4.4208 -2.9131 -2.3587 47 1 3.9805 -4.0331 -3.6812 48 1 6.2728 -4.2180 -1.7042 49 1 6.2013 -4.7607 -3.4141 50 1 5.8840 -6.5048 -1.2665 51 1 5.1040 -6.7727 -2.8558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096417883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:02 Heat of formation + Delta-G solvation = -48.012889 kcal Electronic energy + Delta-G solvation = -28846.262340 eV Core-core repulsion = 25168.126419 eV Total energy + Delta-G solvation = -3678.135921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65169 -40.93443 -37.94613 -37.20300 -35.42244 -34.18166 -33.73387 -31.37034 -29.50033 -28.39417 -28.33931 -27.77871 -26.98170 -25.52160 -23.15636 -22.58338 -21.75673 -20.39582 -19.82229 -18.62289 -17.85003 -17.65128 -17.08821 -16.95008 -16.60276 -16.34145 -15.99736 -15.52835 -15.48575 -15.24827 -14.63498 -14.54675 -14.37014 -14.14572 -14.03085 -13.68802 -13.43318 -13.33518 -13.09875 -12.93257 -12.90258 -12.66056 -12.55902 -12.38408 -12.27510 -12.20217 -12.05118 -11.97408 -11.86646 -11.72884 -11.60939 -11.21383 -11.07431 -11.07000 -10.78868 -10.63064 -10.51554 -9.51741 -8.41908 -8.15500 -6.19668 1.37235 1.39907 1.50741 1.66339 2.11276 2.41464 3.17693 3.34366 3.49229 3.63868 3.72615 3.86332 3.99159 4.04373 4.11648 4.12501 4.16741 4.27111 4.36211 4.41132 4.57398 4.62872 4.73261 4.74190 4.75977 4.77631 4.84323 4.92061 4.93125 4.94888 5.05642 5.08911 5.12925 5.20374 5.23945 5.27725 5.32156 5.41886 5.51292 5.54312 5.61133 5.64881 5.73448 5.77621 6.13343 6.24765 6.50706 6.77254 6.89483 6.99038 7.26034 7.46954 8.96038 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.003713 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.478026 B = 7539.025421 C = 8135.502997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.148 4.148 5 C 0.068 3.932 6 N -0.536 5.536 7 C 0.160 3.840 8 C -0.509 4.509 9 H 0.063 0.937 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.952 3.048 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.286 1.286 16 C 0.007 3.993 17 C 0.097 3.903 18 H 0.114 0.886 19 O -0.563 6.563 20 C 0.095 3.905 21 N -0.611 5.611 22 C 0.092 3.908 23 C -0.121 4.121 24 C -0.150 4.150 25 C 0.501 3.499 26 O -0.585 6.585 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.044 0.956 39 H -0.024 1.024 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.370 0.630 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.122 0.878 50 H 0.099 0.901 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.145 -3.880 -19.598 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.093 4.093 3 C -0.188 4.188 4 C -0.204 4.204 5 C -0.060 4.060 6 N -0.259 5.259 7 C 0.035 3.965 8 C -0.548 4.548 9 H 0.081 0.919 10 C -0.191 4.191 11 N -0.572 5.572 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.212 1.212 16 C -0.122 4.122 17 C 0.037 3.963 18 H 0.131 0.869 19 O -0.367 6.367 20 C -0.028 4.028 21 N -0.343 5.343 22 C -0.030 4.030 23 C -0.158 4.158 24 C -0.190 4.190 25 C 0.291 3.709 26 O -0.466 6.466 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.061 0.939 39 H -0.006 1.006 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.217 0.783 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.099 0.901 49 H 0.140 0.860 50 H 0.117 0.883 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.322 -4.072 -18.794 24.588 hybrid contribution -1.629 0.608 0.949 1.981 sum 13.693 -3.464 -17.845 22.758 Atomic orbital electron populations 1.22733 0.96081 1.01443 1.00987 1.21134 0.94863 0.96687 0.96607 1.21785 1.01037 0.94848 1.01152 1.22498 1.00822 1.00622 0.96464 1.22338 0.95044 0.92147 0.96436 1.62058 1.14892 1.19517 1.29446 1.20573 0.87306 0.93017 0.95577 1.21611 0.93192 1.19221 1.20749 0.91920 1.25716 0.94949 0.99377 0.99045 1.70087 0.99472 1.44352 1.43302 0.85589 0.78453 0.79194 0.78953 1.18994 1.20448 1.21177 1.23245 0.97492 0.97158 0.94260 1.22698 0.95189 0.92150 0.86239 0.86889 1.86523 1.49980 1.41799 1.58445 1.22086 0.84855 0.98546 0.97360 1.48263 1.19666 1.18249 1.48160 1.22422 0.88458 0.97733 0.94360 1.22626 0.96068 0.92651 1.04462 1.22354 0.93037 1.00703 1.02929 1.21693 0.88884 0.81002 0.79312 1.90667 1.65518 1.51163 1.39260 0.92810 0.93451 0.91824 0.91597 0.91846 0.94731 0.91660 0.91201 0.91603 0.91998 0.91943 0.93883 1.00577 0.93110 0.90599 0.93370 0.78275 0.86871 0.91331 0.89479 0.88746 0.90147 0.86005 0.88297 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 6.18 71.98 0.44 -5.25 16 2 C -0.09 -2.78 0.77 -52.18 -0.04 -2.82 16 3 C -0.13 -3.63 8.22 71.98 0.59 -3.04 16 4 C -0.15 -3.20 7.18 71.98 0.52 -2.68 16 5 C 0.07 2.56 4.54 86.30 0.39 2.95 16 6 N -0.54 -22.72 4.85 -900.80 -4.37 -27.09 16 7 C 0.16 8.28 4.23 85.56 0.36 8.65 16 8 C -0.51 -28.22 7.33 25.60 0.19 -28.03 16 9 H 0.06 3.46 5.52 -2.91 -0.02 3.44 16 10 C 0.01 0.39 5.46 84.66 0.46 0.85 16 11 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 12 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 C 0.01 0.23 3.66 86.30 0.32 0.55 16 17 C 0.10 2.73 2.14 30.59 0.07 2.79 16 18 H 0.11 3.04 3.67 -2.39 -0.01 3.04 16 19 O -0.56 -19.68 12.57 -148.98 -1.87 -21.55 16 20 C 0.09 2.11 5.51 86.38 0.48 2.58 16 21 N -0.61 -12.28 2.86 -818.00 -2.34 -14.62 16 22 C 0.09 1.00 7.35 86.83 0.64 1.64 16 23 C -0.12 -1.01 7.18 31.65 0.23 -0.78 16 24 C -0.15 -2.14 6.86 30.59 0.21 -1.93 16 25 C 0.50 12.46 7.57 87.90 0.67 13.13 16 26 O -0.59 -20.40 17.42 -3.04 -0.05 -20.45 16 27 H 0.05 2.48 5.49 -2.39 -0.01 2.46 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.42 3.28 -2.39 -0.01 2.41 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.52 8.12 -2.38 -0.02 1.50 16 32 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 33 H 0.06 1.38 3.55 -2.39 -0.01 1.37 16 34 H 0.07 1.24 7.90 -2.38 -0.02 1.22 16 35 H 0.07 1.29 5.71 -2.39 -0.01 1.27 16 36 H 0.06 2.71 4.96 -2.39 -0.01 2.70 16 37 H 0.06 2.16 6.25 -2.38 -0.01 2.14 16 38 H 0.04 2.24 3.27 -10.73 -0.04 2.20 16 39 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 40 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 41 H 0.08 2.34 2.69 -2.38 -0.01 2.33 16 42 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 43 H 0.37 12.81 9.05 -74.05 -0.67 12.14 16 44 H 0.11 1.85 6.94 -2.39 -0.02 1.84 16 45 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 46 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -73.98 368.18 -0.55 -74.53 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.26 Total: 29.26 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 5.51 Total: -11.39 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -6.42 Total: -97.10 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.93 Total: -42.01 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.98 -0.55 -74.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096417883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.516 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds