Wall clock time and date at job start Fri Apr 10 2020 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00111 * 2 1 4 4 C 1.50697 * 109.47331 * 66.04047 * 3 2 1 5 5 H 1.07997 * 119.99589 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00270 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99813 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00134 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47175 * 60.00317 * 8 6 4 10 10 H 1.48499 * 109.47235 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47217 * 300.00316 * 8 6 4 12 12 C 1.46898 * 110.99873 * 236.04521 * 2 1 3 13 13 C 1.52999 * 109.47548 * 58.95499 * 12 2 1 14 14 C 1.52997 * 109.47317 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99771 * 204.99940 * 16 15 14 18 18 O 1.21504 * 120.00215 * 359.97438 * 17 16 15 19 19 O 1.34644 * 120.00078 * 179.97438 * 17 16 15 20 20 C 1.45192 * 117.00222 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47232 * 59.99739 * 20 19 17 22 22 C 1.52995 * 109.47415 * 180.02562 * 20 19 17 23 23 C 1.53005 * 109.47290 * 299.99985 * 20 19 17 24 24 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 25 25 C 1.52997 * 109.46817 * 60.00194 * 24 15 14 26 26 H 1.09008 * 109.46689 * 183.95707 * 1 2 3 27 27 H 1.09003 * 109.47283 * 303.95381 * 1 2 3 28 28 H 1.08994 * 109.47461 * 63.95735 * 1 2 3 29 29 H 1.08994 * 109.47469 * 186.04794 * 3 2 1 30 30 H 1.09002 * 109.46862 * 306.04638 * 3 2 1 31 31 H 0.96992 * 119.99824 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47032 * 178.95207 * 12 2 1 33 33 H 1.08996 * 109.46929 * 59.99097 * 13 12 2 34 34 H 1.09002 * 109.46716 * 299.99902 * 13 12 2 35 35 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 38 38 H 0.97006 * 120.00568 * 24.99713 * 16 15 14 39 39 H 1.09000 * 109.46898 * 60.00176 * 21 20 19 40 40 H 1.09001 * 109.46891 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.46992 * 300.00383 * 21 20 19 42 42 H 1.09004 * 109.47433 * 59.99524 * 22 20 19 43 43 H 1.09000 * 109.47929 * 180.02562 * 22 20 19 44 44 H 1.09000 * 109.46971 * 299.99981 * 22 20 19 45 45 H 1.09004 * 109.46658 * 59.99851 * 23 20 19 46 46 H 1.08998 * 109.47365 * 179.97438 * 23 20 19 47 47 H 1.08998 * 109.47223 * 299.99954 * 23 20 19 48 48 H 1.08993 * 109.47662 * 180.02562 * 24 15 14 49 49 H 1.09002 * 109.47075 * 300.00932 * 24 15 14 50 50 H 1.09002 * 109.47153 * 60.00231 * 25 24 15 51 51 H 1.09001 * 109.47289 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0486 6 6 2.0267 3.3495 1.5284 7 7 2.7111 4.0022 0.6145 8 14 1.5828 4.1869 3.1380 9 1 2.1756 3.4299 4.2698 10 1 2.1139 5.5737 3.1375 11 1 0.1058 4.2231 3.2863 12 6 1.9954 -0.7660 -1.1376 13 6 1.4837 -0.1558 -2.4440 14 6 2.0325 -0.9532 -3.6287 15 6 1.5639 -2.4061 -3.5265 16 7 2.0899 -3.1698 -4.6607 17 6 1.4510 -4.2800 -5.0798 18 8 0.4391 -4.6478 -4.5168 19 8 1.9341 -4.9816 -6.1225 20 6 1.1949 -6.1668 -6.5188 21 6 -0.2293 -5.7712 -6.9140 22 6 1.8907 -6.8271 -7.7106 23 6 1.1445 -7.1514 -5.3487 24 6 2.0757 -3.0164 -2.2202 25 6 1.5269 -2.2189 -1.0354 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5740 0.8524 28 1 -0.3634 0.4511 -0.9232 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9273 -0.8309 31 1 2.9850 4.9185 0.7761 32 1 3.0849 -0.7342 -1.1240 33 1 1.8179 0.8791 -2.5169 34 1 0.3943 -0.1876 -2.4575 35 1 3.1220 -0.9210 -3.6150 36 1 1.6676 -0.5187 -4.5594 37 1 0.4745 -2.4383 -3.5403 38 1 2.8980 -2.8764 -5.1100 39 1 -0.1934 -5.0697 -7.7475 40 1 -0.7840 -6.6609 -7.2119 41 1 -0.7247 -5.3010 -6.0646 42 1 2.9052 -7.1090 -7.4287 43 1 1.3355 -7.7166 -8.0085 44 1 1.9269 -6.1259 -8.5443 45 1 0.6490 -6.6812 -4.4993 46 1 0.5892 -8.0410 -5.6460 47 1 2.1591 -7.4333 -5.0671 48 1 1.7422 -4.0515 -2.1475 49 1 3.1651 -2.9841 -2.2064 50 1 0.4374 -2.2511 -1.0492 51 1 1.8918 -2.6534 -0.1047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096455318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:08 Heat of formation + Delta-G solvation = -95.682893 kcal Electronic energy + Delta-G solvation = -27135.032967 eV Core-core repulsion = 23454.829920 eV Total energy + Delta-G solvation = -3680.203048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96266 -39.27893 -37.45012 -35.69765 -34.40655 -33.27449 -32.16285 -30.67997 -28.41297 -27.69932 -27.63402 -26.98816 -24.97846 -23.25196 -22.52260 -21.67022 -20.47158 -20.16349 -18.99816 -18.15098 -16.87136 -16.40631 -16.24459 -15.76555 -15.00478 -14.97569 -14.67180 -14.50362 -14.17604 -13.99440 -13.73690 -13.55316 -13.13011 -12.80467 -12.72464 -12.59768 -12.27864 -12.16853 -12.15712 -12.02022 -11.88475 -11.66349 -11.60964 -11.46915 -11.17903 -10.99351 -10.90428 -10.81555 -10.59295 -10.55919 -10.35987 -10.24222 -10.14142 -10.06865 -9.61757 -9.17812 -9.16225 -8.41177 -7.13805 -6.01212 -4.02014 2.03588 2.74576 3.34521 3.38354 3.41590 3.97370 4.43682 4.43973 4.48056 4.62539 4.71056 4.84303 4.94042 5.16986 5.25018 5.27622 5.29366 5.33710 5.34211 5.39848 5.45094 5.47758 5.58631 5.60105 5.62217 5.66735 5.69476 5.90081 5.98748 6.02849 6.03926 6.09522 6.15628 6.18979 6.28002 6.34006 6.37404 6.43574 6.46032 6.62752 6.75469 6.83049 7.33310 7.33486 7.39480 7.82817 8.12496 8.24461 8.28860 8.59681 9.05664 9.61962 11.09523 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.002277 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.162584 B =12292.538755 C =12515.143147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.084 3.916 13 C -0.149 4.149 14 C -0.119 4.119 15 C 0.163 3.837 16 N -0.706 5.706 17 C 0.649 3.351 18 O -0.567 6.567 19 O -0.368 6.368 20 C 0.136 3.864 21 C -0.184 4.184 22 C -0.141 4.141 23 C -0.184 4.184 24 C -0.126 4.126 25 C -0.107 4.107 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.015 0.985 29 H 0.027 0.973 30 H -0.006 1.006 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.404 0.596 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -19.770 -16.582 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.257 5.257 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.025 4.025 13 C -0.189 4.189 14 C -0.158 4.158 15 C 0.060 3.940 16 N -0.364 5.364 17 C 0.402 3.598 18 O -0.457 6.457 19 O -0.283 6.283 20 C 0.099 3.901 21 C -0.241 4.241 22 C -0.198 4.198 23 C -0.241 4.241 24 C -0.165 4.165 25 C -0.146 4.146 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.238 0.762 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.713 -20.061 -15.931 25.674 hybrid contribution -0.077 1.094 -0.191 1.113 sum -1.789 -18.967 -16.123 24.958 Atomic orbital electron populations 1.22294 0.89304 0.99629 1.00523 1.62328 1.06869 1.17838 1.38688 1.19715 0.95236 0.81781 0.96493 1.21156 1.34718 0.96873 1.01820 0.91972 1.24985 0.95362 0.97380 0.96944 1.69944 1.38474 1.11436 1.34070 0.86569 0.78672 0.78306 0.83901 1.20186 1.21422 1.20329 1.21723 0.99487 0.92779 0.88545 1.22212 1.01300 1.00366 0.95021 1.21761 1.01487 0.93021 0.99548 1.21113 0.99552 0.89860 0.83471 1.44984 1.30477 1.25497 1.35439 1.18133 0.82000 0.80675 0.79010 1.90897 1.25647 1.69925 1.59181 1.86296 1.55096 1.39568 1.47350 1.22038 0.91386 0.81751 0.94877 1.22517 0.95543 1.02593 1.03417 1.21858 1.01284 1.00434 0.96195 1.22516 1.02866 0.99100 0.99584 1.21925 1.00953 0.99691 0.93977 1.21559 1.00870 0.94833 0.97298 0.93416 0.90994 0.96683 0.95443 0.98844 0.92940 0.90700 0.90540 0.91620 0.91239 0.91655 0.89208 0.76192 0.92252 0.91229 0.89270 0.91495 0.90202 0.91528 0.89256 0.91240 0.92211 0.91644 0.91728 0.91803 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 8.63 60.07 0.52 1.12 16 2 N -0.53 -11.24 4.74 -236.33 -1.12 -12.36 16 3 C 0.19 4.91 4.16 -4.98 -0.02 4.89 16 4 C -0.51 -14.17 8.46 -34.44 -0.29 -14.46 16 5 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.08 1.42 2.22 -67.71 -0.15 1.27 16 13 C -0.15 -2.30 4.51 -26.73 -0.12 -2.42 16 14 C -0.12 -1.43 5.39 -26.73 -0.14 -1.57 16 15 C 0.16 1.94 2.45 -67.93 -0.17 1.78 16 16 N -0.71 -7.63 5.08 -58.73 -0.30 -7.93 16 17 C 0.65 8.06 8.02 54.06 0.43 8.50 16 18 O -0.57 -8.28 11.54 -19.27 -0.22 -8.50 16 19 O -0.37 -4.09 9.94 -40.34 -0.40 -4.49 16 20 C 0.14 1.25 1.13 -90.62 -0.10 1.15 16 21 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 22 C -0.14 -0.91 8.85 37.15 0.33 -0.58 16 23 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 24 C -0.13 -1.57 5.49 -26.73 -0.15 -1.72 16 25 C -0.11 -1.54 5.00 -26.73 -0.13 -1.68 16 26 H 0.05 0.80 6.33 -51.92 -0.33 0.47 16 27 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 28 H 0.01 0.28 6.28 -51.93 -0.33 -0.05 16 29 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 30 H -0.01 -0.17 6.94 -51.93 -0.36 -0.53 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 33 H 0.08 1.35 6.75 -51.93 -0.35 1.00 16 34 H 0.07 1.02 6.39 -51.93 -0.33 0.69 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 38 H 0.40 3.50 8.71 -40.82 -0.36 3.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.03 5.88 -51.93 -0.31 0.73 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 51 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -30.70 385.07 -9.15 -39.85 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.16 Total: 1.80 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 0.53 Total: -4.99 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.68 Total: -46.11 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.62 Total: -12.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.70 -9.15 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.832 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds