Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00111 * 2 1 4 4 C 1.50697 * 109.47331 * 66.04047 * 3 2 1 5 5 H 1.07997 * 119.99589 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00270 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99813 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00134 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47175 * 60.00317 * 8 6 4 10 10 H 1.48499 * 109.47235 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47217 * 300.00316 * 8 6 4 12 12 C 1.46898 * 110.99873 * 236.04521 * 2 1 3 13 13 C 1.52999 * 109.47548 * 58.95499 * 12 2 1 14 14 C 1.52997 * 109.47317 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 12 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99771 * 204.99940 * 16 15 14 18 18 O 1.21504 * 120.00215 * 359.97438 * 17 16 15 19 19 O 1.34644 * 120.00078 * 179.97438 * 17 16 15 20 20 C 1.45192 * 117.00222 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47232 * 59.99739 * 20 19 17 22 22 C 1.52995 * 109.47415 * 180.02562 * 20 19 17 23 23 C 1.53005 * 109.47290 * 299.99985 * 20 19 17 24 24 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 25 25 C 1.52997 * 109.46817 * 60.00194 * 24 15 14 26 26 H 1.09008 * 109.46689 * 183.95707 * 1 2 3 27 27 H 1.09003 * 109.47283 * 303.95381 * 1 2 3 28 28 H 1.08994 * 109.47461 * 63.95735 * 1 2 3 29 29 H 1.08994 * 109.47469 * 186.04794 * 3 2 1 30 30 H 1.09002 * 109.46862 * 306.04638 * 3 2 1 31 31 H 0.96992 * 119.99824 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47032 * 178.95207 * 12 2 1 33 33 H 1.08996 * 109.46929 * 59.99097 * 13 12 2 34 34 H 1.09002 * 109.46716 * 299.99902 * 13 12 2 35 35 H 1.09002 * 109.47153 * 299.99641 * 14 13 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 14 13 12 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 38 38 H 0.97006 * 120.00568 * 24.99713 * 16 15 14 39 39 H 1.09000 * 109.46898 * 60.00176 * 21 20 19 40 40 H 1.09001 * 109.46891 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.46992 * 300.00383 * 21 20 19 42 42 H 1.09004 * 109.47433 * 59.99524 * 22 20 19 43 43 H 1.09000 * 109.47929 * 180.02562 * 22 20 19 44 44 H 1.09000 * 109.46971 * 299.99981 * 22 20 19 45 45 H 1.09004 * 109.46658 * 59.99851 * 23 20 19 46 46 H 1.08998 * 109.47365 * 179.97438 * 23 20 19 47 47 H 1.08998 * 109.47223 * 299.99954 * 23 20 19 48 48 H 1.08993 * 109.47662 * 180.02562 * 24 15 14 49 49 H 1.09002 * 109.47075 * 300.00932 * 24 15 14 50 50 H 1.09002 * 109.47153 * 60.00231 * 25 24 15 51 51 H 1.09001 * 109.47289 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0486 6 6 2.0267 3.3495 1.5284 7 7 2.7111 4.0022 0.6145 8 14 1.5828 4.1869 3.1380 9 1 2.1756 3.4299 4.2698 10 1 2.1139 5.5737 3.1375 11 1 0.1058 4.2231 3.2863 12 6 1.9954 -0.7660 -1.1376 13 6 1.4837 -0.1558 -2.4440 14 6 2.0325 -0.9532 -3.6287 15 6 1.5639 -2.4061 -3.5265 16 7 2.0899 -3.1698 -4.6607 17 6 1.4510 -4.2800 -5.0798 18 8 0.4391 -4.6478 -4.5168 19 8 1.9341 -4.9816 -6.1225 20 6 1.1949 -6.1668 -6.5188 21 6 -0.2293 -5.7712 -6.9140 22 6 1.8907 -6.8271 -7.7106 23 6 1.1445 -7.1514 -5.3487 24 6 2.0757 -3.0164 -2.2202 25 6 1.5269 -2.2189 -1.0354 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5740 0.8524 28 1 -0.3634 0.4511 -0.9232 29 1 3.0797 1.3444 -0.1083 30 1 1.5611 1.9273 -0.8309 31 1 2.9850 4.9185 0.7761 32 1 3.0849 -0.7342 -1.1240 33 1 1.8179 0.8791 -2.5169 34 1 0.3943 -0.1876 -2.4575 35 1 3.1220 -0.9210 -3.6150 36 1 1.6676 -0.5187 -4.5594 37 1 0.4745 -2.4383 -3.5403 38 1 2.8980 -2.8764 -5.1100 39 1 -0.1934 -5.0697 -7.7475 40 1 -0.7840 -6.6609 -7.2119 41 1 -0.7247 -5.3010 -6.0646 42 1 2.9052 -7.1090 -7.4287 43 1 1.3355 -7.7166 -8.0085 44 1 1.9269 -6.1259 -8.5443 45 1 0.6490 -6.6812 -4.4993 46 1 0.5892 -8.0410 -5.6460 47 1 2.1591 -7.4333 -5.0671 48 1 1.7422 -4.0515 -2.1475 49 1 3.1651 -2.9841 -2.2064 50 1 0.4374 -2.2511 -1.0492 51 1 1.8918 -2.6534 -0.1047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096455318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -115.825626 kcal Electronic energy + Delta-G solvation = -27135.906422 eV Core-core repulsion = 23454.829920 eV Total energy + Delta-G solvation = -3681.076502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86908 -40.49759 -38.51382 -36.95591 -35.35214 -34.78451 -33.76382 -31.83389 -29.91846 -28.72573 -28.33402 -28.26527 -26.68020 -24.57699 -23.61143 -23.07448 -21.66719 -21.11946 -20.28362 -19.09220 -18.51080 -17.72950 -17.14860 -16.84463 -16.75553 -16.16785 -15.93284 -15.51992 -15.36043 -15.17082 -15.08889 -14.61570 -14.49035 -14.18524 -13.84013 -13.61103 -13.32476 -13.17453 -13.13050 -13.01145 -12.89680 -12.85477 -12.83220 -12.68774 -12.48794 -12.43003 -12.31938 -12.20926 -12.05443 -11.94718 -11.82993 -11.47850 -11.35601 -11.28081 -11.10029 -10.98426 -10.57696 -10.14695 -8.86162 -8.17956 -6.27378 1.18106 1.41583 1.44423 1.52227 1.79783 2.41626 3.12326 3.14728 3.41473 3.63615 3.77228 3.78550 3.83333 3.97924 4.05644 4.15145 4.29964 4.37146 4.45639 4.47300 4.55178 4.60516 4.64299 4.71903 4.76937 4.79361 4.80243 4.82261 4.87389 4.90833 5.02048 5.05202 5.12558 5.13633 5.16147 5.19197 5.25343 5.29656 5.31272 5.33438 5.40659 5.48568 5.50222 5.62298 5.68593 6.10424 6.40464 6.45519 6.73107 6.89478 7.38784 7.41922 8.92278 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.002277 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.162584 B =12292.538755 C =12515.143147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.546 5.546 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.083 3.917 13 C -0.142 4.142 14 C -0.108 4.108 15 C 0.172 3.828 16 N -0.696 5.696 17 C 0.646 3.354 18 O -0.591 6.591 19 O -0.370 6.370 20 C 0.124 3.876 21 C -0.180 4.180 22 C -0.135 4.135 23 C -0.180 4.180 24 C -0.117 4.117 25 C -0.096 4.096 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.000 1.000 30 H -0.030 1.030 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -21.322 -17.356 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.268 5.268 3 C 0.085 3.915 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.194 1.194 12 C -0.026 4.026 13 C -0.181 4.181 14 C -0.146 4.146 15 C 0.069 3.931 16 N -0.355 5.355 17 C 0.399 3.601 18 O -0.482 6.482 19 O -0.284 6.284 20 C 0.088 3.912 21 C -0.237 4.237 22 C -0.192 4.192 23 C -0.237 4.237 24 C -0.156 4.156 25 C -0.135 4.135 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.018 0.982 30 H -0.012 1.012 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.791 -21.635 -16.729 27.407 hybrid contribution -0.057 1.509 0.001 1.510 sum -1.848 -20.127 -16.728 26.236 Atomic orbital electron populations 1.22264 0.88140 1.01122 0.99726 1.62223 1.07980 1.15349 1.41279 1.19315 0.93375 0.83996 0.94810 1.21499 1.34740 0.97484 1.02647 0.92146 1.25883 0.95136 0.98099 1.00564 1.70069 1.39399 1.11807 1.36077 0.85477 0.78758 0.77179 0.79440 1.19455 1.20881 1.19371 1.21803 0.99002 0.93837 0.87976 1.22056 1.01128 0.99193 0.95772 1.21636 1.02134 0.92478 0.98402 1.20872 0.98748 0.89775 0.83709 1.44803 1.30731 1.24997 1.35014 1.18273 0.81754 0.80883 0.79161 1.90897 1.26742 1.70591 1.59992 1.86312 1.55338 1.40160 1.46622 1.22399 0.91715 0.81181 0.95882 1.22473 0.95610 1.03384 1.02246 1.21880 1.01481 1.01024 0.94853 1.22471 1.02951 0.99641 0.98629 1.21822 1.01471 0.99047 0.93236 1.21443 1.00845 0.92960 0.98239 0.90479 0.92963 0.96484 0.98211 1.01221 0.92771 0.91508 0.93351 0.91819 0.89952 0.90243 0.90594 0.74723 0.92021 0.89165 0.92063 0.91183 0.88026 0.91221 0.92029 0.89191 0.91973 0.91821 0.90673 0.91758 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 8.63 127.69 1.10 2.48 16 2 N -0.55 -23.35 4.74 -901.61 -4.28 -27.63 16 3 C 0.21 11.18 4.16 85.56 0.36 11.54 16 4 C -0.53 -29.98 8.46 25.60 0.22 -29.76 16 5 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16 6 C 0.00 0.06 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 8 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.08 2.80 2.22 44.92 0.10 2.90 16 13 C -0.14 -4.38 4.51 30.59 0.14 -4.25 16 14 C -0.11 -2.44 5.39 30.59 0.16 -2.28 16 15 C 0.17 3.88 2.45 44.99 0.11 4.00 16 16 N -0.70 -13.96 5.08 -570.13 -2.90 -16.86 16 17 C 0.65 15.41 8.02 129.79 1.04 16.45 16 18 O -0.59 -17.09 11.54 19.83 0.23 -16.86 16 19 O -0.37 -7.69 9.94 -55.53 -0.55 -8.25 16 20 C 0.12 2.07 1.13 -10.79 -0.01 2.06 16 21 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 22 C -0.14 -1.39 8.85 71.98 0.64 -0.75 16 23 C -0.18 -3.02 8.37 71.98 0.60 -2.42 16 24 C -0.12 -2.74 5.49 30.59 0.17 -2.57 16 25 C -0.10 -2.69 5.00 30.60 0.15 -2.53 16 26 H 0.08 2.50 6.33 -2.38 -0.02 2.49 16 27 H 0.05 2.20 6.76 -2.39 -0.02 2.19 16 28 H 0.02 0.64 6.28 -2.39 -0.02 0.62 16 29 H 0.00 -0.01 8.00 -2.39 -0.02 -0.03 16 30 H -0.03 -1.69 6.94 -2.39 -0.02 -1.71 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 33 H 0.05 1.77 6.75 -2.39 -0.02 1.75 16 34 H 0.06 1.98 6.39 -2.39 -0.02 1.97 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 38 H 0.42 6.33 8.71 -92.70 -0.81 5.52 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 42 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 1.41 5.88 -2.38 -0.01 1.39 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.79 6.43 -2.39 -0.02 1.78 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -67.60 385.07 0.75 -66.84 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.09 Total: 19.02 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.84 Total: -7.03 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -6.89 Total: -100.37 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.32 Total: -25.11 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.60 0.75 -66.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096455318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.982 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds