Wall clock time and date at job start Fri Apr 10 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.53002 * 109.47246 * 119.99816 * 2 1 3 5 5 H 1.08999 * 109.47387 * 200.76576 * 4 2 1 6 6 C 1.50706 * 109.47091 * 80.76335 * 4 2 1 7 7 O 1.21278 * 120.00096 * 240.00439 * 6 4 2 8 8 N 1.34771 * 119.99574 * 59.99901 * 6 4 2 9 9 C 1.46503 * 120.00341 * 0.02562 * 8 6 4 10 10 C 1.46500 * 119.99900 * 179.97438 * 8 6 4 11 11 C 1.50707 * 109.46926 * 90.00280 * 10 8 6 12 12 H 1.08001 * 120.00166 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99775 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00417 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99782 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47679 * 59.99822 * 15 13 11 17 17 H 1.48501 * 109.47421 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47128 * 299.99629 * 15 13 11 19 19 N 1.46903 * 109.47184 * 320.76694 * 4 2 1 20 20 C 1.47006 * 111.00088 * 182.41363 * 19 4 2 21 21 C 1.53102 * 109.25958 * 182.39241 * 20 19 4 22 22 H 1.08995 * 109.50591 * 63.12549 * 21 20 19 23 23 C 1.52998 * 109.50541 * 183.21799 * 21 20 19 24 24 O 1.43022 * 109.25455 * 303.15278 * 21 20 19 25 25 C 1.43012 * 113.73960 * 58.66853 * 24 21 20 26 26 H 1.09001 * 109.50636 * 61.26311 * 25 24 21 27 27 C 1.52998 * 109.50799 * 181.34717 * 25 24 21 28 28 C 1.47011 * 110.99810 * 306.04980 * 19 4 2 29 29 H 1.08996 * 109.47684 * 300.00091 * 1 2 3 30 30 H 1.09003 * 109.47491 * 60.00080 * 1 2 3 31 31 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47244 * 240.00142 * 2 1 3 33 33 H 1.08997 * 109.46892 * 323.95014 * 3 2 1 34 34 H 1.09006 * 109.46820 * 83.94665 * 3 2 1 35 35 H 1.09004 * 109.46983 * 203.94728 * 3 2 1 36 36 H 1.08999 * 109.46966 * 269.99755 * 9 8 6 37 37 H 1.08999 * 109.47244 * 29.99450 * 9 8 6 38 38 H 1.08997 * 109.47392 * 150.00115 * 9 8 6 39 39 H 1.08998 * 109.47591 * 210.00063 * 10 8 6 40 40 H 1.08999 * 109.47402 * 330.00676 * 10 8 6 41 41 H 0.97006 * 120.00294 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.50993 * 302.32388 * 20 19 4 43 43 H 1.09005 * 109.50699 * 62.45948 * 20 19 4 44 44 H 1.09007 * 109.47111 * 60.00239 * 23 21 20 45 45 H 1.09007 * 109.46746 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47630 * 299.99685 * 23 21 20 47 47 H 1.09003 * 109.46634 * 59.99804 * 27 25 24 48 48 H 1.08994 * 109.47522 * 180.02562 * 27 25 24 49 49 H 1.08996 * 109.47303 * 300.00545 * 27 25 24 50 50 H 1.09001 * 109.50788 * 297.54428 * 28 19 4 51 51 H 1.09000 * 109.50867 * 57.67502 * 28 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0670 -0.4168 1.4507 6 6 1.9924 -2.2106 1.0241 7 8 1.3183 -2.9121 1.7482 8 7 2.6989 -2.7628 0.0180 9 6 3.5136 -1.9154 -0.8564 10 6 2.6532 -4.2107 -0.2006 11 6 1.5274 -4.5405 -1.1467 12 1 0.9082 -3.7506 -1.5455 13 6 1.2879 -5.8507 -1.5030 14 7 2.0421 -6.8126 -1.0177 15 14 -0.1071 -6.2595 -2.6761 16 1 0.1181 -5.5707 -3.9723 17 1 -0.1544 -7.7273 -2.8967 18 1 -1.3946 -5.8057 -2.0916 19 7 1.1918 -0.3722 2.3968 20 6 1.6868 -1.0029 3.6290 21 6 0.7425 -0.6625 4.7850 22 1 -0.2431 -1.0831 4.5858 23 6 1.2951 -1.2490 6.0856 24 8 0.6402 0.7588 4.9076 25 6 0.1605 1.4055 3.7257 26 1 -0.8423 1.0456 3.4954 27 6 0.1210 2.9182 3.9513 28 6 1.0988 1.0860 2.5590 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.3776 2.0620 -0.6048 34 1 2.0588 1.8212 1.0220 35 1 3.0465 1.4720 -0.4171 36 1 2.9130 -1.5840 -1.7035 37 1 3.8639 -1.0475 -0.2977 38 1 4.3699 -2.4842 -1.2186 39 1 3.5980 -4.5434 -0.6303 40 1 2.4884 -4.7168 0.7506 41 1 1.8734 -7.7345 -1.2681 42 1 1.7233 -2.0841 3.4952 43 1 2.6860 -0.6293 3.8531 44 1 2.2801 -0.8268 6.2850 45 1 0.6226 -1.0060 6.9083 46 1 1.3765 -2.3318 5.9903 47 1 1.1243 3.2777 4.1801 48 1 -0.2451 3.4106 3.0504 49 1 -0.5446 3.1441 4.7844 50 1 2.0886 1.4930 2.7659 51 1 0.7061 1.5297 1.6441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106761027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:17 Heat of formation + Delta-G solvation = -50.865616 kcal Electronic energy + Delta-G solvation = -28962.441370 eV Core-core repulsion = 25284.181745 eV Total energy + Delta-G solvation = -3678.259625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.64704 -38.82075 -36.73717 -35.08267 -33.78420 -33.18489 -32.48806 -30.32581 -28.71202 -27.42983 -26.91988 -26.43344 -25.63083 -23.69811 -22.30818 -21.93126 -20.43068 -20.15910 -18.50839 -16.62026 -16.55656 -16.39457 -16.19596 -15.44883 -15.30622 -14.74585 -14.54610 -14.45320 -14.24078 -13.82274 -13.48016 -13.32219 -12.99520 -12.86075 -12.78550 -12.24317 -12.22233 -12.15194 -12.04663 -12.02026 -11.78163 -11.72778 -11.54114 -11.46710 -11.21390 -10.95635 -10.91232 -10.87441 -10.77120 -10.58469 -10.40036 -10.15188 -10.02716 -9.62468 -9.38336 -8.74986 -8.42305 -8.12630 -7.62422 -6.03378 -4.07750 3.32295 3.34884 3.37035 3.42789 3.61227 3.69900 4.13095 4.45906 4.68519 4.86220 4.92843 4.99963 5.04596 5.06464 5.10931 5.23515 5.26141 5.32209 5.38929 5.41504 5.47874 5.49838 5.55134 5.60069 5.63605 5.69993 5.78333 5.85192 5.86876 5.89494 5.93336 5.97334 6.04287 6.11054 6.12527 6.16931 6.19871 6.25264 6.48715 6.66897 6.93890 7.09223 7.15029 7.31754 7.43531 7.55165 7.92968 8.24118 8.41325 8.91424 9.11852 9.57266 11.04706 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.004140 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.454895 B = 6761.265474 C = 7379.448634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.174 4.174 4 C 0.074 3.926 5 H 0.058 0.942 6 C 0.513 3.487 7 O -0.523 6.523 8 N -0.602 5.602 9 C 0.084 3.916 10 C 0.247 3.753 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 N -0.507 5.507 20 C 0.015 3.985 21 C 0.094 3.906 22 H 0.068 0.932 23 C -0.142 4.142 24 O -0.386 6.386 25 C 0.089 3.911 26 H 0.065 0.935 27 C -0.143 4.143 28 C 0.006 3.994 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.116 0.884 43 H 0.030 0.970 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.039 0.961 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 19.072 6.719 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.230 4.230 4 C -0.038 4.038 5 H 0.075 0.925 6 C 0.298 3.702 7 O -0.399 6.399 8 N -0.335 5.335 9 C -0.060 4.060 10 C 0.128 3.872 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.232 5.232 20 C -0.113 4.113 21 C 0.036 3.964 22 H 0.086 0.914 23 C -0.199 4.199 24 O -0.306 6.306 25 C 0.031 3.969 26 H 0.083 0.917 27 C -0.200 4.200 28 C -0.121 4.121 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.212 18.376 7.163 19.724 hybrid contribution 0.156 -0.177 -0.971 0.999 sum 0.368 18.199 6.192 19.227 Atomic orbital electron populations 1.21855 0.93824 1.03101 1.00977 1.21407 0.97810 0.95663 0.97069 1.22517 1.01074 0.96249 1.03208 1.21653 0.95272 0.94550 0.92311 0.92486 1.20018 0.80186 0.88614 0.81341 1.90596 1.40130 1.62983 1.46236 1.48117 1.45452 1.10407 1.29484 1.21758 0.95333 0.94579 0.94377 1.19286 0.97093 0.72962 0.97819 1.21377 1.15218 0.92596 1.27073 0.92526 1.24918 0.96498 0.96122 0.96497 1.69918 1.39102 1.00146 1.44345 0.86577 0.82749 0.77133 0.81074 1.20281 1.21200 1.20164 1.61909 1.50812 1.07548 1.02885 1.23102 0.95740 1.03409 0.88998 1.22108 0.98896 0.80691 0.94664 0.91406 1.21725 1.01400 1.00921 0.95895 1.87922 1.86966 1.19770 1.35907 1.22145 0.96954 0.93164 0.84667 0.91684 1.21737 1.02779 0.93144 1.02386 1.23508 0.99015 0.89406 1.00203 0.91440 0.93568 0.91948 0.88841 0.92118 0.90799 0.92826 0.92833 0.92718 0.91435 0.95099 0.93919 0.92698 0.86651 0.95168 0.92211 0.91873 0.90646 0.92045 0.91051 0.91707 0.94268 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.38 37.15 0.31 -1.69 16 2 C -0.10 -1.36 2.07 -90.62 -0.19 -1.55 16 3 C -0.17 -1.75 8.44 37.16 0.31 -1.43 16 4 C 0.07 1.15 1.02 -68.86 -0.07 1.08 16 5 H 0.06 0.83 7.23 -51.93 -0.38 0.46 16 6 C 0.51 10.58 6.52 -10.98 -0.07 10.51 16 7 O -0.52 -12.87 13.60 5.56 0.08 -12.79 16 8 N -0.60 -12.63 2.85 -182.95 -0.52 -13.16 16 9 C 0.08 1.32 8.89 59.85 0.53 1.85 16 10 C 0.25 6.44 5.20 -5.19 -0.03 6.41 16 11 C -0.52 -14.82 9.39 -34.44 -0.32 -15.14 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 15 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 N -0.51 -7.70 3.45 -227.72 -0.78 -8.48 16 20 C 0.02 0.24 4.55 -3.71 -0.02 0.22 16 21 C 0.09 1.32 3.43 -26.68 -0.09 1.23 16 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 23 C -0.14 -1.67 9.57 37.16 0.36 -1.31 16 24 O -0.39 -5.30 10.11 -35.23 -0.36 -5.65 16 25 C 0.09 1.05 3.42 -26.68 -0.09 0.95 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 C -0.14 -1.26 9.57 37.16 0.36 -0.91 16 28 C 0.01 0.07 2.50 -3.71 -0.01 0.07 16 29 H 0.07 0.90 5.13 -51.93 -0.27 0.63 16 30 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.06 1.12 7.97 -51.93 -0.41 0.70 16 32 H 0.09 1.34 4.56 -51.93 -0.24 1.11 16 33 H 0.06 0.55 7.91 -51.93 -0.41 0.13 16 34 H 0.07 0.71 3.96 -51.93 -0.21 0.51 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.81 6.72 -51.93 -0.35 0.47 16 37 H 0.05 0.70 6.15 -51.93 -0.32 0.38 16 38 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 39 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 40 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.12 2.14 5.52 -51.93 -0.29 1.85 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.04 0.47 7.43 -51.93 -0.39 0.08 16 51 H 0.11 1.17 3.53 -51.93 -0.18 0.99 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -32.39 377.55 -8.13 -40.52 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.83 Total: 0.87 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 0.88 Total: 1.96 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.57 Total: -47.53 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.28 Total: -18.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.39 -8.13 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106761027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.343 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds