Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.53002 * 109.47246 * 119.99816 * 2 1 3 5 5 H 1.08999 * 109.47387 * 200.76576 * 4 2 1 6 6 C 1.50706 * 109.47091 * 80.76335 * 4 2 1 7 7 O 1.21278 * 120.00096 * 240.00439 * 6 4 2 8 8 N 1.34771 * 119.99574 * 59.99901 * 6 4 2 9 9 C 1.46503 * 120.00341 * 0.02562 * 8 6 4 10 10 C 1.46500 * 119.99900 * 179.97438 * 8 6 4 11 11 C 1.50707 * 109.46926 * 90.00280 * 10 8 6 12 12 H 1.08001 * 120.00166 * 0.02562 * 11 10 8 13 13 C 1.37874 * 119.99775 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00417 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99782 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47679 * 59.99822 * 15 13 11 17 17 H 1.48501 * 109.47421 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47128 * 299.99629 * 15 13 11 19 19 N 1.46903 * 109.47184 * 320.76694 * 4 2 1 20 20 C 1.47006 * 111.00088 * 182.41363 * 19 4 2 21 21 C 1.53102 * 109.25958 * 182.39241 * 20 19 4 22 22 H 1.08995 * 109.50591 * 63.12549 * 21 20 19 23 23 C 1.52998 * 109.50541 * 183.21799 * 21 20 19 24 24 O 1.43022 * 109.25455 * 303.15278 * 21 20 19 25 25 C 1.43012 * 113.73960 * 58.66853 * 24 21 20 26 26 H 1.09001 * 109.50636 * 61.26311 * 25 24 21 27 27 C 1.52998 * 109.50799 * 181.34717 * 25 24 21 28 28 C 1.47011 * 110.99810 * 306.04980 * 19 4 2 29 29 H 1.08996 * 109.47684 * 300.00091 * 1 2 3 30 30 H 1.09003 * 109.47491 * 60.00080 * 1 2 3 31 31 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47244 * 240.00142 * 2 1 3 33 33 H 1.08997 * 109.46892 * 323.95014 * 3 2 1 34 34 H 1.09006 * 109.46820 * 83.94665 * 3 2 1 35 35 H 1.09004 * 109.46983 * 203.94728 * 3 2 1 36 36 H 1.08999 * 109.46966 * 269.99755 * 9 8 6 37 37 H 1.08999 * 109.47244 * 29.99450 * 9 8 6 38 38 H 1.08997 * 109.47392 * 150.00115 * 9 8 6 39 39 H 1.08998 * 109.47591 * 210.00063 * 10 8 6 40 40 H 1.08999 * 109.47402 * 330.00676 * 10 8 6 41 41 H 0.97006 * 120.00294 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.50993 * 302.32388 * 20 19 4 43 43 H 1.09005 * 109.50699 * 62.45948 * 20 19 4 44 44 H 1.09007 * 109.47111 * 60.00239 * 23 21 20 45 45 H 1.09007 * 109.46746 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47630 * 299.99685 * 23 21 20 47 47 H 1.09003 * 109.46634 * 59.99804 * 27 25 24 48 48 H 1.08994 * 109.47522 * 180.02562 * 27 25 24 49 49 H 1.08996 * 109.47303 * 300.00545 * 27 25 24 50 50 H 1.09001 * 109.50788 * 297.54428 * 28 19 4 51 51 H 1.09000 * 109.50867 * 57.67502 * 28 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0670 -0.4168 1.4507 6 6 1.9924 -2.2106 1.0241 7 8 1.3183 -2.9121 1.7482 8 7 2.6989 -2.7628 0.0180 9 6 3.5136 -1.9154 -0.8564 10 6 2.6532 -4.2107 -0.2006 11 6 1.5274 -4.5405 -1.1467 12 1 0.9082 -3.7506 -1.5455 13 6 1.2879 -5.8507 -1.5030 14 7 2.0421 -6.8126 -1.0177 15 14 -0.1071 -6.2595 -2.6761 16 1 0.1181 -5.5707 -3.9723 17 1 -0.1544 -7.7273 -2.8967 18 1 -1.3946 -5.8057 -2.0916 19 7 1.1918 -0.3722 2.3968 20 6 1.6868 -1.0029 3.6290 21 6 0.7425 -0.6625 4.7850 22 1 -0.2431 -1.0831 4.5858 23 6 1.2951 -1.2490 6.0856 24 8 0.6402 0.7588 4.9076 25 6 0.1605 1.4055 3.7257 26 1 -0.8423 1.0456 3.4954 27 6 0.1210 2.9182 3.9513 28 6 1.0988 1.0860 2.5590 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.3776 2.0620 -0.6048 34 1 2.0588 1.8212 1.0220 35 1 3.0465 1.4720 -0.4171 36 1 2.9130 -1.5840 -1.7035 37 1 3.8639 -1.0475 -0.2977 38 1 4.3699 -2.4842 -1.2186 39 1 3.5980 -4.5434 -0.6303 40 1 2.4884 -4.7168 0.7506 41 1 1.8734 -7.7345 -1.2681 42 1 1.7233 -2.0841 3.4952 43 1 2.6860 -0.6293 3.8531 44 1 2.2801 -0.8268 6.2850 45 1 0.6226 -1.0060 6.9083 46 1 1.3765 -2.3318 5.9903 47 1 1.1243 3.2777 4.1801 48 1 -0.2451 3.4106 3.0504 49 1 -0.5446 3.1441 4.7844 50 1 2.0886 1.4930 2.7659 51 1 0.7061 1.5297 1.6441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106761027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -72.662814 kcal Electronic energy + Delta-G solvation = -28963.386567 eV Core-core repulsion = 25284.181745 eV Total energy + Delta-G solvation = -3679.204822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90579 -40.16795 -38.00247 -36.75906 -34.95240 -34.72595 -34.06186 -31.36040 -30.32164 -28.72882 -28.04999 -27.58917 -27.10959 -25.26738 -23.81252 -22.92455 -21.61613 -21.25652 -20.04574 -18.67927 -17.90184 -17.68145 -17.37304 -17.00192 -16.60560 -16.23385 -16.05115 -15.76905 -15.34402 -15.14800 -14.72031 -14.60182 -14.26363 -14.00953 -13.97375 -13.73625 -13.52508 -13.36392 -13.18018 -13.05447 -12.99764 -12.88507 -12.79112 -12.70710 -12.66043 -12.52511 -12.48663 -12.19528 -12.08023 -11.88256 -11.85942 -11.69885 -11.52803 -11.09068 -10.64706 -10.54499 -10.22492 -9.42165 -9.29732 -8.22851 -6.37139 1.34784 1.39254 1.46276 1.80220 2.20544 2.38815 2.67941 2.84126 3.06644 3.56522 3.72413 3.84205 3.86714 3.99985 4.09243 4.11246 4.13119 4.21594 4.35911 4.39850 4.46071 4.50164 4.60281 4.62119 4.65227 4.71157 4.74180 4.77511 4.86477 4.90649 4.96515 4.99958 5.00716 5.03409 5.10248 5.14955 5.18820 5.20333 5.22235 5.31768 5.47922 5.50763 5.56669 5.81446 5.89070 6.01545 6.05847 6.27471 6.69573 6.78353 7.28507 7.50284 8.83964 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.004140 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.454895 B = 6761.265474 C = 7379.448634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.165 4.165 4 C 0.087 3.913 5 H 0.077 0.923 6 C 0.502 3.498 7 O -0.575 6.575 8 N -0.609 5.609 9 C 0.079 3.921 10 C 0.263 3.737 11 C -0.539 4.539 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.964 3.036 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.280 1.280 19 N -0.526 5.526 20 C 0.021 3.979 21 C 0.098 3.902 22 H 0.048 0.952 23 C -0.137 4.137 24 O -0.391 6.391 25 C 0.080 3.920 26 H 0.054 0.946 27 C -0.136 4.136 28 C 0.011 3.989 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.024 0.976 40 H -0.004 1.004 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 22.520 5.634 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 C -0.222 4.222 4 C -0.025 4.025 5 H 0.095 0.905 6 C 0.290 3.710 7 O -0.455 6.455 8 N -0.341 5.341 9 C -0.063 4.063 10 C 0.141 3.859 11 C -0.578 4.578 12 H 0.069 0.931 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.789 3.211 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.206 1.206 19 N -0.251 5.251 20 C -0.107 4.107 21 C 0.040 3.960 22 H 0.067 0.933 23 C -0.195 4.195 24 O -0.311 6.311 25 C 0.022 3.978 26 H 0.072 0.928 27 C -0.193 4.193 28 C -0.116 4.116 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.014 0.986 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.331 21.876 6.057 22.701 hybrid contribution 0.117 -1.263 -0.597 1.402 sum 0.449 20.613 5.460 21.328 Atomic orbital electron populations 1.21823 0.94664 1.00313 1.02494 1.21450 0.97075 0.97972 0.95276 1.22446 1.02280 0.93187 1.04258 1.21581 0.96647 0.90417 0.93810 0.90543 1.21060 0.78856 0.90913 0.80135 1.90573 1.42207 1.64784 1.47921 1.48115 1.46385 1.08958 1.30654 1.22042 0.94872 0.94978 0.94412 1.18740 0.96075 0.76231 0.94828 1.21632 1.15798 0.92851 1.27480 0.93090 1.25818 0.99028 0.95959 0.98179 1.70038 1.40711 1.00556 1.45526 0.85520 0.78900 0.77368 0.79341 1.18360 1.20254 1.20582 1.61853 1.50992 1.09794 1.02416 1.22926 0.96534 1.01276 0.89992 1.22019 0.97610 0.81312 0.95094 0.93349 1.21701 1.01962 1.00631 0.95173 1.87925 1.86991 1.19116 1.37039 1.22405 0.96258 0.95034 0.84063 0.92759 1.21736 1.03322 0.90530 1.03713 1.23619 0.99779 0.87043 1.01149 0.90624 0.91325 0.96804 0.89579 0.90291 0.90072 0.91135 0.91826 0.88965 0.90977 0.95835 0.98585 0.92426 0.90384 0.94576 0.91457 0.90615 0.90997 0.91551 0.88677 0.91518 0.93119 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.38 71.98 0.60 -3.09 16 2 C -0.10 -2.43 2.07 -10.79 -0.02 -2.46 16 3 C -0.17 -2.53 8.44 71.98 0.61 -1.92 16 4 C 0.09 2.63 1.02 44.17 0.05 2.68 16 5 H 0.08 2.03 7.23 -2.39 -0.02 2.01 16 6 C 0.50 21.48 6.52 87.66 0.57 22.05 16 7 O -0.58 -30.34 13.60 -3.02 -0.04 -30.39 16 8 N -0.61 -26.29 2.85 -851.13 -2.42 -28.71 16 9 C 0.08 2.40 8.89 127.77 1.14 3.53 16 10 C 0.26 14.39 5.20 85.64 0.45 14.84 16 11 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 13 C 0.01 0.53 5.46 84.65 0.46 0.99 16 14 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 15 Si 0.96 45.60 29.54 68.60 2.03 47.62 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 N -0.53 -15.73 3.45 -874.36 -3.01 -18.74 16 20 C 0.02 0.66 4.55 86.32 0.39 1.06 16 21 C 0.10 2.78 3.43 30.63 0.10 2.89 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 C -0.14 -3.24 9.57 71.98 0.69 -2.55 16 24 O -0.39 -10.28 10.11 -148.98 -1.51 -11.79 16 25 C 0.08 1.74 3.42 30.63 0.10 1.84 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 C -0.14 -1.95 9.57 71.98 0.69 -1.26 16 28 C 0.01 0.23 2.50 86.31 0.22 0.44 16 29 H 0.08 1.89 5.13 -2.39 -0.01 1.88 16 30 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 32 H 0.09 2.28 4.56 -2.39 -0.01 2.27 16 33 H 0.08 0.99 7.91 -2.39 -0.02 0.97 16 34 H 0.08 1.16 3.96 -2.38 -0.01 1.15 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.82 6.72 -2.39 -0.02 1.81 16 37 H 0.09 2.08 6.15 -2.39 -0.01 2.07 16 38 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 39 H 0.02 1.30 7.89 -2.39 -0.02 1.29 16 40 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 41 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 42 H 0.08 3.12 5.52 -2.39 -0.01 3.10 16 43 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 45 H 0.07 1.57 8.14 -2.38 -0.02 1.56 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.05 1.01 7.43 -2.39 -0.02 1.00 16 51 H 0.13 2.25 3.53 -2.39 -0.01 2.25 16 Total: -1.00 -75.35 377.55 2.51 -72.84 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.90 Total: 17.95 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.29 Total: 7.74 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -5.15 Total: -103.98 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.55 Total: -42.18 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -75.35 2.51 -72.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106761027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.174 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds