Wall clock time and date at job start Fri Apr 10 2020 18:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47334 * 2 1 4 4 N 1.46901 * 109.47352 * 239.99931 * 2 1 3 5 5 C 1.46896 * 111.00074 * 85.00045 * 4 2 1 6 6 H 1.09005 * 110.75048 * 328.47160 * 5 4 2 7 7 C 1.55308 * 110.84866 * 92.17024 * 5 4 2 8 8 C 1.54946 * 100.94192 * 152.32331 * 7 5 4 9 9 C 1.52996 * 110.30933 * 204.63500 * 8 7 5 10 10 C 1.53005 * 110.39077 * 82.51105 * 8 7 5 11 11 O 1.43645 * 105.13519 * 323.55709 * 8 7 5 12 12 C 1.43237 * 109.97390 * 24.42651 * 11 8 7 13 13 C 1.53001 * 109.82736 * 238.77673 * 12 11 8 14 14 C 1.52995 * 109.82952 * 117.80545 * 12 11 8 15 15 C 1.50707 * 109.47209 * 119.99928 * 2 1 3 16 16 O 1.21272 * 120.00209 * 92.90508 * 15 2 1 17 17 N 1.34777 * 119.99769 * 272.90830 * 15 2 1 18 18 C 1.46496 * 119.99924 * 183.64548 * 17 15 2 19 19 C 1.46507 * 119.99948 * 3.64940 * 17 15 2 20 20 C 1.50702 * 109.46883 * 92.22362 * 19 17 15 21 21 H 1.07995 * 120.00152 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99650 * 179.97438 * 20 19 17 23 23 N 1.31522 * 120.00124 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00294 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47234 * 89.99721 * 24 22 20 26 26 H 1.48497 * 109.47398 * 210.00287 * 24 22 20 27 27 H 1.48500 * 109.46882 * 330.00162 * 24 22 20 28 28 H 1.09001 * 109.47064 * 177.22294 * 1 2 3 29 29 H 1.08993 * 109.47288 * 297.21991 * 1 2 3 30 30 H 1.09001 * 109.47232 * 57.22409 * 1 2 3 31 31 H 1.00905 * 110.99988 * 208.95389 * 4 2 1 32 32 H 1.09002 * 111.12081 * 270.23882 * 7 5 4 33 33 H 1.08992 * 111.12251 * 34.40262 * 7 5 4 34 34 H 1.09001 * 109.47237 * 177.16403 * 9 8 7 35 35 H 1.09000 * 109.47388 * 297.16986 * 9 8 7 36 36 H 1.09001 * 109.46928 * 57.16789 * 9 8 7 37 37 H 1.08994 * 109.47450 * 302.78337 * 10 8 7 38 38 H 1.09002 * 109.47188 * 62.78792 * 10 8 7 39 39 H 1.09003 * 109.46726 * 182.77921 * 10 8 7 40 40 H 1.09008 * 109.46618 * 178.13010 * 13 12 11 41 41 H 1.08998 * 109.47486 * 298.13348 * 13 12 11 42 42 H 1.09004 * 109.46954 * 58.13838 * 13 12 11 43 43 H 1.09000 * 109.47354 * 301.86346 * 14 12 11 44 44 H 1.09000 * 109.47290 * 61.86766 * 14 12 11 45 45 H 1.09003 * 109.47394 * 181.86712 * 14 12 11 46 46 H 1.08997 * 109.47282 * 275.10029 * 18 17 15 47 47 H 1.09001 * 109.46947 * 35.10258 * 18 17 15 48 48 H 1.08999 * 109.46987 * 155.10056 * 18 17 15 49 49 H 1.08996 * 109.46979 * 332.22249 * 19 17 15 50 50 H 1.09002 * 109.46992 * 212.22262 * 19 17 15 51 51 H 0.96997 * 119.99938 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3468 6 1 1.3024 0.9809 -2.2792 7 6 3.4871 0.8762 -2.4563 8 6 3.5661 1.1502 -3.9793 9 6 5.0262 1.2194 -4.4313 10 6 2.8419 2.4529 -4.3249 11 8 2.9055 0.0338 -4.5960 12 6 1.9788 -0.5554 -3.6763 13 6 2.3382 -2.0249 -3.4472 14 6 0.5571 -0.4475 -4.2313 15 6 2.0324 -0.7104 1.2305 16 8 2.2847 -1.8958 1.1858 17 7 2.2012 -0.0284 2.3807 18 6 2.7647 -0.6998 3.5544 19 6 1.8210 1.3845 2.4570 20 6 0.4010 1.4966 2.9491 21 1 -0.1621 0.6048 3.1813 22 6 -0.1792 2.7379 3.1029 23 7 0.5068 3.8240 2.8206 24 14 -1.9395 2.8771 3.7121 25 1 -1.9447 2.9660 5.1944 26 1 -2.5661 4.0963 3.1409 27 1 -2.7071 1.6797 3.2854 28 1 -0.3633 -1.0265 -0.0498 29 1 -0.3633 0.4700 0.9138 30 1 -0.3634 0.5563 -0.8641 31 1 2.9174 -1.1205 -1.0287 32 1 3.5336 1.8047 -1.8872 33 1 4.2679 0.1845 -2.1405 34 1 5.0658 1.3621 -5.5112 35 1 5.5208 2.0549 -3.9359 36 1 5.5321 0.2903 -4.1688 37 1 1.8072 2.3940 -3.9874 38 1 3.3386 3.2873 -3.8296 39 1 2.8640 2.6057 -5.4039 40 1 1.6499 -2.4584 -2.7216 41 1 2.2631 -2.5684 -4.3890 42 1 3.3576 -2.0947 -3.0677 43 1 0.3144 0.6005 -4.4074 44 1 0.4905 -0.9985 -5.1694 45 1 -0.1465 -0.8675 -3.5124 46 1 1.9700 -1.2132 4.0957 47 1 3.5131 -1.4246 3.2340 48 1 3.2302 0.0389 4.2069 49 1 1.8996 1.8358 1.4680 50 1 2.4867 1.9030 3.1470 51 1 0.0985 4.6972 2.9284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132647074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:42 Heat of formation + Delta-G solvation = -87.771801 kcal Electronic energy + Delta-G solvation = -28587.335284 eV Core-core repulsion = 24907.475287 eV Total energy + Delta-G solvation = -3679.859997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.51949 -39.21240 -35.75117 -35.00329 -34.13900 -32.61699 -31.97196 -29.92111 -28.02162 -27.78591 -27.29156 -26.85434 -26.28672 -23.55775 -23.00615 -21.82676 -20.50835 -19.37803 -18.38898 -16.76015 -16.58008 -16.24142 -15.58215 -15.38559 -14.89320 -14.65341 -14.53217 -14.24880 -13.83787 -13.53771 -13.41446 -13.28063 -12.95707 -12.66462 -12.47675 -12.24904 -12.12425 -12.00656 -11.93982 -11.86149 -11.80875 -11.75961 -11.59848 -11.52333 -11.41725 -11.30953 -11.01668 -10.97857 -10.79852 -10.73017 -10.52541 -10.41361 -10.16943 -9.82212 -9.47477 -8.98655 -8.62047 -8.12897 -7.78072 -6.26072 -4.32627 3.18025 3.25573 3.26953 3.33791 3.67161 3.78356 4.25539 4.32286 4.60032 4.72126 4.84872 5.04279 5.06715 5.07281 5.10536 5.26202 5.30409 5.48793 5.53810 5.54161 5.63665 5.70104 5.74949 5.80385 5.85193 5.86642 5.88069 5.95636 6.00168 6.02891 6.09930 6.10982 6.14038 6.22173 6.33591 6.35244 6.37635 6.45218 6.55773 6.66076 6.95669 7.05751 7.15359 7.27657 7.46549 7.57041 7.68469 7.96937 8.25356 8.71464 8.94188 9.34550 10.80527 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.004174 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.626510 B = 6706.081502 C = 7245.990110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.071 0.929 4 N -0.654 5.654 5 C 0.068 3.932 6 H 0.095 0.905 7 C -0.179 4.179 8 C 0.105 3.895 9 C -0.141 4.141 10 C -0.161 4.161 11 O -0.367 6.367 12 C 0.112 3.888 13 C -0.139 4.139 14 C -0.149 4.149 15 C 0.512 3.488 16 O -0.564 6.564 17 N -0.599 5.599 18 C 0.097 3.903 19 C 0.234 3.766 20 C -0.535 4.535 21 H 0.063 0.937 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.894 3.106 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.271 1.271 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.347 0.653 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.040 0.960 50 H 0.034 0.966 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 -3.198 -11.696 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 H 0.089 0.911 4 N -0.287 5.287 5 C -0.043 4.043 6 H 0.113 0.887 7 C -0.218 4.218 8 C 0.065 3.935 9 C -0.199 4.199 10 C -0.219 4.219 11 O -0.287 6.287 12 C 0.072 3.928 13 C -0.197 4.197 14 C -0.206 4.206 15 C 0.299 3.701 16 O -0.444 6.444 17 N -0.330 5.330 18 C -0.046 4.046 19 C 0.114 3.886 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.196 1.196 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.759 -3.921 -12.046 13.532 hybrid contribution -0.265 1.064 0.929 1.437 sum 4.494 -2.857 -11.116 12.326 Atomic orbital electron populations 1.21820 0.91826 1.02149 1.03794 1.21474 0.98237 0.96498 0.87442 0.91095 1.60413 1.34006 1.31072 1.03225 1.23180 0.96128 0.93596 0.91436 0.88667 1.24031 0.98783 1.02535 0.96489 1.22130 0.92808 0.87265 0.91277 1.21838 0.93886 1.02283 1.01853 1.22209 1.01039 0.96524 1.02119 1.88465 1.56149 1.45184 1.38888 1.21962 0.89380 0.93856 0.87604 1.21884 1.02227 0.94117 1.01436 1.22059 0.95293 1.01901 1.01352 1.20437 0.77678 0.86946 0.85048 1.90603 1.52968 1.15353 1.85495 1.48163 1.60581 1.14061 1.10188 1.21408 0.97881 0.97266 0.88089 1.19541 0.96007 0.74608 0.98413 1.21433 0.97835 0.92681 1.45373 0.91921 1.24929 0.98225 0.95520 0.94994 1.69915 1.37164 0.97960 1.47825 0.86541 0.84299 0.77843 0.79142 1.20491 1.21020 1.19596 0.92546 0.88797 0.92936 0.83201 0.89815 0.90325 0.92032 0.91426 0.92075 0.92108 0.91636 0.91986 0.89590 0.93212 0.93062 0.92681 0.92371 0.90982 0.93449 0.92419 0.91559 0.94251 0.94754 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.35 37.16 0.35 -2.15 16 2 C 0.08 1.34 2.18 -68.86 -0.15 1.19 16 3 H 0.07 1.31 5.76 -51.93 -0.30 1.01 16 4 N -0.65 -10.07 4.35 -98.92 -0.43 -10.50 16 5 C 0.07 0.92 2.10 -65.77 -0.14 0.78 16 6 H 0.10 1.35 6.61 -51.93 -0.34 1.00 16 7 C -0.18 -2.23 5.64 -24.48 -0.14 -2.37 16 8 C 0.10 1.23 1.21 -89.59 -0.11 1.12 16 9 C -0.14 -1.43 8.95 37.16 0.33 -1.10 16 10 C -0.16 -1.75 8.86 37.16 0.33 -1.42 16 11 O -0.37 -4.93 10.04 -35.23 -0.35 -5.28 16 12 C 0.11 1.45 1.25 -89.90 -0.11 1.33 16 13 C -0.14 -1.79 7.95 37.16 0.30 -1.50 16 14 C -0.15 -1.79 8.74 37.15 0.32 -1.46 16 15 C 0.51 10.41 6.66 -10.98 -0.07 10.34 16 16 O -0.56 -12.50 15.99 5.56 0.09 -12.41 16 17 N -0.60 -12.34 2.86 -182.95 -0.52 -12.86 16 18 C 0.10 1.76 10.39 59.84 0.62 2.38 16 19 C 0.23 5.32 5.03 -5.19 -0.03 5.29 16 20 C -0.53 -13.25 7.33 -34.44 -0.25 -13.50 16 21 H 0.06 1.60 7.77 -52.49 -0.41 1.19 16 22 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 24 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.94 5.81 -51.93 -0.30 1.64 16 30 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 31 H 0.35 5.52 6.99 -39.29 -0.27 5.24 16 32 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.69 7.36 -51.93 -0.38 0.31 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.18 7.42 -51.92 -0.39 0.80 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.67 7.96 -51.93 -0.41 0.25 16 43 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 48 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 49 H 0.04 0.92 5.70 -51.93 -0.30 0.62 16 50 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 51 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -27.24 394.28 -7.71 -34.95 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -9.31 Total: 7.58 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 1.16 Total: 0.53 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.22 Total: -46.19 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.26 Total: -17.70 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.24 -7.71 -34.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132647074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.818 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds