Wall clock time and date at job start Fri Apr 10 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38249 * 120.00546 * 2 1 4 4 C 1.38215 * 120.00323 * 180.25480 * 3 2 1 5 5 C 1.38255 * 119.99965 * 359.79393 * 4 3 2 6 6 C 1.38219 * 119.99789 * 359.95153 * 5 4 3 7 7 C 1.38220 * 119.99666 * 179.76998 * 2 1 3 8 8 C 1.50698 * 119.99861 * 359.97438 * 7 2 1 9 9 H 1.08992 * 110.64480 * 358.02739 * 8 7 2 10 10 C 1.54595 * 110.87504 * 234.76556 * 8 7 2 11 11 C 1.53996 * 105.14221 * 219.61591 * 10 8 7 12 12 H 1.08999 * 109.91946 * 118.12980 * 11 10 8 13 13 C 1.53006 * 109.91441 * 239.42421 * 11 10 8 14 14 N 1.47900 * 107.05587 * 358.77438 * 11 10 8 15 15 C 1.46900 * 111.00019 * 145.84677 * 14 11 10 16 16 C 1.53001 * 109.47299 * 176.74832 * 15 14 11 17 17 H 1.09000 * 109.47109 * 54.81606 * 16 15 14 18 18 C 1.47202 * 109.46970 * 294.81343 * 16 15 14 19 19 N 7.49446 * 72.14863 * 205.68134 * 2 1 3 20 20 C 1.53003 * 109.47009 * 174.81798 * 16 15 14 21 21 C 1.50698 * 109.46908 * 185.00257 * 20 16 15 22 22 H 1.07995 * 120.00296 * 359.97438 * 21 20 16 23 23 C 1.37883 * 119.99900 * 179.97438 * 21 20 16 24 24 N 1.31519 * 119.99933 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47261 * 269.99584 * 25 23 21 27 27 H 1.48493 * 109.47588 * 29.99959 * 25 23 21 28 28 H 1.48508 * 109.46918 * 150.00307 * 25 23 21 29 29 C 1.48533 * 105.82349 * 25.33222 * 14 11 10 30 30 H 1.09001 * 109.46884 * 270.23278 * 1 2 3 31 31 H 1.09006 * 109.46865 * 30.22442 * 1 2 3 32 32 H 1.08994 * 109.47496 * 150.22902 * 1 2 3 33 33 H 1.07996 * 120.00069 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.99979 * 179.76364 * 4 3 2 35 35 H 1.07999 * 120.00146 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99826 * 179.97438 * 6 5 4 37 37 H 1.09001 * 110.30979 * 338.53358 * 10 8 7 38 38 H 1.09000 * 110.30790 * 100.59841 * 10 8 7 39 39 H 1.09001 * 109.46536 * 177.58414 * 13 11 10 40 40 H 1.08988 * 109.47240 * 297.58723 * 13 11 10 41 41 H 1.08997 * 109.47274 * 57.59049 * 13 11 10 42 42 H 1.08997 * 109.46913 * 56.74506 * 15 14 11 43 43 H 1.09003 * 109.46844 * 296.74902 * 15 14 11 44 44 H 1.08996 * 109.47393 * 64.99280 * 20 16 15 45 45 H 1.09006 * 109.46910 * 304.99843 * 20 16 15 46 46 H 0.96995 * 119.99883 * 180.02562 * 24 23 21 47 47 H 1.08996 * 110.66547 * 79.22017 * 29 14 11 48 48 H 1.08993 * 110.66938 * 202.19112 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0053 5 6 4.2717 -0.0002 -0.0063 6 6 3.5805 -1.1971 -0.0010 7 6 2.1980 -1.1971 0.0048 8 6 1.4444 -2.5021 0.0106 9 1 0.3695 -2.3250 0.0454 10 6 1.8911 -3.3908 1.1941 11 6 1.9385 -4.8218 0.6270 12 1 2.9547 -5.2115 0.6868 13 6 0.9831 -5.7246 1.4101 14 7 1.5116 -4.7425 -0.7868 15 6 2.2280 -5.7267 -1.6091 16 6 1.7031 -5.6704 -3.0451 17 1 1.7789 -4.6496 -3.4199 18 6 0.2950 -6.0989 -3.0700 19 7 -0.7904 -6.4290 -3.0915 20 6 2.5353 -6.6015 -3.9292 21 6 2.0991 -6.4542 -5.3641 22 1 1.3073 -5.7657 -5.6199 23 6 2.7110 -7.1984 -6.3505 24 7 3.6756 -8.0364 -6.0390 25 14 2.1698 -7.0163 -8.1290 26 1 1.0830 -7.9862 -8.4176 27 1 1.6742 -5.6352 -8.3568 28 1 3.3223 -7.2830 -9.0268 29 6 1.8194 -3.3573 -1.2258 30 1 -0.3633 0.0042 1.0277 31 1 -0.3633 0.8880 -0.5173 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6585 2.1325 0.0004 34 1 4.1205 2.1324 -0.0092 35 1 5.3517 -0.0003 -0.0109 36 1 4.1205 -2.1325 -0.0022 37 1 2.8789 -3.0889 1.5422 38 1 1.1685 -3.3285 2.0078 39 1 0.9903 -6.7244 0.9759 40 1 1.3042 -5.7779 2.4502 41 1 -0.0257 -5.3148 1.3617 42 1 2.0677 -6.7253 -1.2025 43 1 3.2938 -5.4986 -1.6026 44 1 2.3893 -7.6331 -3.6090 45 1 3.5897 -6.3396 -3.8412 46 1 4.1062 -8.5597 -6.7330 47 1 2.8794 -3.2539 -1.4578 48 1 1.2099 -3.0820 -2.0864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151039211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:57 Heat of formation + Delta-G solvation = 33.762855 kcal Electronic energy + Delta-G solvation = -25648.093355 eV Core-core repulsion = 22280.812416 eV Total energy + Delta-G solvation = -3367.280939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.34448 -38.70708 -36.35376 -34.07420 -33.39369 -32.70462 -32.16506 -30.58065 -29.22920 -27.01675 -26.43719 -25.58925 -23.79010 -22.54938 -21.76652 -21.25661 -20.30458 -19.79307 -17.01661 -16.54154 -16.41952 -15.99101 -15.48372 -14.90762 -14.66940 -14.52411 -14.24560 -13.96382 -13.84364 -13.39372 -13.22890 -13.03263 -12.78707 -12.74513 -12.52963 -12.30230 -12.15184 -12.05240 -11.86222 -11.79261 -11.41058 -11.29855 -11.20987 -11.16402 -11.07687 -10.94364 -10.68097 -10.62189 -10.49442 -10.41467 -10.14167 -9.51813 -9.21558 -8.90998 -8.65772 -8.45218 -8.27619 -6.09091 -4.12059 1.21492 1.25595 3.30348 3.36831 3.40249 3.59055 3.76371 3.86076 3.98860 4.41321 4.52274 4.61239 4.71391 4.78966 4.80293 4.92204 4.96795 5.05322 5.13391 5.18817 5.29148 5.32397 5.46431 5.47949 5.49717 5.53279 5.55464 5.63876 5.66855 5.73396 5.81478 5.86119 5.89378 5.95061 6.01278 6.03776 6.08931 6.14644 6.32929 6.36811 6.39052 6.41351 6.50250 6.58107 6.88654 7.03998 7.19210 7.42986 7.53552 7.86293 8.23992 8.61191 8.92640 9.53365 11.01868 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003352 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.473879 B = 8350.546885 C = 9235.587128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.069 4.069 8 C -0.059 4.059 9 H 0.095 0.905 10 C -0.116 4.116 11 C 0.062 3.938 12 H 0.054 0.946 13 C -0.134 4.134 14 N -0.515 5.515 15 C 0.055 3.945 16 C 0.011 3.989 17 H 0.098 0.902 18 C 0.257 3.743 19 N -0.479 5.479 20 C 0.032 3.968 21 C -0.525 4.525 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.273 1.273 28 H -0.285 1.285 29 C 0.043 3.957 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.036 0.964 46 H 0.262 0.738 47 H 0.053 0.947 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 16.347 17.331 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.078 4.078 9 H 0.113 0.887 10 C -0.154 4.154 11 C -0.046 4.046 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.239 5.239 15 C -0.074 4.074 16 C -0.011 4.011 17 H 0.116 0.884 18 C -0.060 4.060 19 N -0.156 5.156 20 C -0.007 4.007 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.139 4.139 24 N -0.531 5.531 25 Si 0.719 3.281 26 H -0.206 1.206 27 H -0.197 1.197 28 H -0.211 1.211 29 C -0.084 4.084 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.025 15.583 17.166 23.206 hybrid contribution 1.206 0.303 -1.090 1.653 sum 0.181 15.885 16.076 22.601 Atomic orbital electron populations 1.20884 0.91339 1.03117 1.02318 1.19783 0.96029 0.92576 0.99747 1.20995 0.94275 0.97338 1.01280 1.21099 0.94308 0.97988 1.00732 1.21110 0.99811 0.92509 1.00761 1.21000 0.93681 0.98141 0.99952 1.19626 0.93484 0.93963 0.99823 1.21159 1.00266 0.90902 0.95445 0.88693 1.22576 1.01720 0.93601 0.97500 1.22360 0.97650 0.95414 0.89222 0.92786 1.21742 0.99643 0.99579 0.98248 1.64759 1.54592 1.03121 1.01474 1.22403 0.95976 0.96521 0.92481 1.19209 0.84052 1.02596 0.95252 0.88386 1.28776 0.94348 0.92034 0.90836 1.80921 1.13416 1.10495 1.10798 1.19169 0.94567 0.93832 0.93118 1.21138 1.19484 1.23982 0.91749 0.92527 1.24948 0.94835 0.94997 0.99147 1.69939 1.24164 1.25506 1.33449 0.86601 0.78226 0.78671 0.84642 1.20623 1.19738 1.21100 1.23333 1.00008 0.87918 0.97156 0.91254 0.91642 0.90724 0.86319 0.86357 0.86226 0.86081 0.91282 0.90910 0.92547 0.92812 0.92111 0.90184 0.92790 0.95596 0.94537 0.92813 0.92917 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.38 36.00 0.34 -0.67 16 2 C -0.08 -0.81 5.88 -104.63 -0.62 -1.43 16 3 C -0.12 -1.12 9.70 -39.59 -0.38 -1.51 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.11 8.13 -39.58 -0.32 -1.44 16 7 C -0.07 -0.72 4.95 -104.62 -0.52 -1.23 16 8 C -0.06 -0.62 3.02 -89.91 -0.27 -0.89 16 9 H 0.09 1.01 5.62 -51.93 -0.29 0.72 16 10 C -0.12 -1.13 6.03 -25.37 -0.15 -1.28 16 11 C 0.06 0.69 3.09 -66.64 -0.21 0.49 16 12 H 0.05 0.59 7.77 -51.93 -0.40 0.19 16 13 C -0.13 -1.47 9.32 37.16 0.35 -1.12 16 14 N -0.52 -6.94 4.63 -222.57 -1.03 -7.97 16 15 C 0.06 0.83 4.05 -3.82 -0.02 0.82 16 16 C 0.01 0.20 2.17 -93.40 -0.20 0.00 16 17 H 0.10 1.75 6.86 -51.93 -0.36 1.40 16 18 C 0.26 5.44 13.67 -20.80 -0.28 5.16 16 19 N -0.48 -10.99 18.53 42.11 0.78 -10.21 16 20 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 21 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 22 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 25 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.04 0.54 5.05 -1.89 -0.01 0.53 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.66 6.14 -51.93 -0.32 0.34 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.15 7.28 -52.49 -0.38 0.77 16 37 H 0.07 0.63 6.83 -51.93 -0.35 0.28 16 38 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.48 8.14 -51.94 -0.42 0.06 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.76 7.99 -51.93 -0.41 0.34 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.05 0.64 6.84 -51.93 -0.36 0.29 16 48 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -30.37 386.05 -10.18 -40.55 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.85 Total: -1.94 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.61 Total: -17.77 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.49 Total: -43.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.37 -10.18 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151039211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.314 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds