Wall clock time and date at job start Fri Apr 10 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38249 * 120.00546 * 2 1 4 4 C 1.38215 * 120.00323 * 180.25480 * 3 2 1 5 5 C 1.38255 * 119.99965 * 359.79393 * 4 3 2 6 6 C 1.38219 * 119.99789 * 359.95153 * 5 4 3 7 7 C 1.38220 * 119.99666 * 179.76998 * 2 1 3 8 8 C 1.50698 * 119.99861 * 359.97438 * 7 2 1 9 9 H 1.08992 * 110.64480 * 358.02739 * 8 7 2 10 10 C 1.54595 * 110.87504 * 234.76556 * 8 7 2 11 11 C 1.53996 * 105.14221 * 219.61591 * 10 8 7 12 12 H 1.08999 * 109.91946 * 118.12980 * 11 10 8 13 13 C 1.53006 * 109.91441 * 239.42421 * 11 10 8 14 14 N 1.47900 * 107.05587 * 358.77438 * 11 10 8 15 15 C 1.46900 * 111.00019 * 145.84677 * 14 11 10 16 16 C 1.53001 * 109.47299 * 176.74832 * 15 14 11 17 17 H 1.09000 * 109.47109 * 54.81606 * 16 15 14 18 18 C 1.47202 * 109.46970 * 294.81343 * 16 15 14 19 19 N 7.49446 * 72.14863 * 205.68134 * 2 1 3 20 20 C 1.53003 * 109.47009 * 174.81798 * 16 15 14 21 21 C 1.50698 * 109.46908 * 185.00257 * 20 16 15 22 22 H 1.07995 * 120.00296 * 359.97438 * 21 20 16 23 23 C 1.37883 * 119.99900 * 179.97438 * 21 20 16 24 24 N 1.31519 * 119.99933 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99736 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47261 * 269.99584 * 25 23 21 27 27 H 1.48493 * 109.47588 * 29.99959 * 25 23 21 28 28 H 1.48508 * 109.46918 * 150.00307 * 25 23 21 29 29 C 1.48533 * 105.82349 * 25.33222 * 14 11 10 30 30 H 1.09001 * 109.46884 * 270.23278 * 1 2 3 31 31 H 1.09006 * 109.46865 * 30.22442 * 1 2 3 32 32 H 1.08994 * 109.47496 * 150.22902 * 1 2 3 33 33 H 1.07996 * 120.00069 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.99979 * 179.76364 * 4 3 2 35 35 H 1.07999 * 120.00146 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99826 * 179.97438 * 6 5 4 37 37 H 1.09001 * 110.30979 * 338.53358 * 10 8 7 38 38 H 1.09000 * 110.30790 * 100.59841 * 10 8 7 39 39 H 1.09001 * 109.46536 * 177.58414 * 13 11 10 40 40 H 1.08988 * 109.47240 * 297.58723 * 13 11 10 41 41 H 1.08997 * 109.47274 * 57.59049 * 13 11 10 42 42 H 1.08997 * 109.46913 * 56.74506 * 15 14 11 43 43 H 1.09003 * 109.46844 * 296.74902 * 15 14 11 44 44 H 1.08996 * 109.47393 * 64.99280 * 20 16 15 45 45 H 1.09006 * 109.46910 * 304.99843 * 20 16 15 46 46 H 0.96995 * 119.99883 * 180.02562 * 24 23 21 47 47 H 1.08996 * 110.66547 * 79.22017 * 29 14 11 48 48 H 1.08993 * 110.66938 * 202.19112 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0053 5 6 4.2717 -0.0002 -0.0063 6 6 3.5805 -1.1971 -0.0010 7 6 2.1980 -1.1971 0.0048 8 6 1.4444 -2.5021 0.0106 9 1 0.3695 -2.3250 0.0454 10 6 1.8911 -3.3908 1.1941 11 6 1.9385 -4.8218 0.6270 12 1 2.9547 -5.2115 0.6868 13 6 0.9831 -5.7246 1.4101 14 7 1.5116 -4.7425 -0.7868 15 6 2.2280 -5.7267 -1.6091 16 6 1.7031 -5.6704 -3.0451 17 1 1.7789 -4.6496 -3.4199 18 6 0.2950 -6.0989 -3.0700 19 7 -0.7904 -6.4290 -3.0915 20 6 2.5353 -6.6015 -3.9292 21 6 2.0991 -6.4542 -5.3641 22 1 1.3073 -5.7657 -5.6199 23 6 2.7110 -7.1984 -6.3505 24 7 3.6756 -8.0364 -6.0390 25 14 2.1698 -7.0163 -8.1290 26 1 1.0830 -7.9862 -8.4176 27 1 1.6742 -5.6352 -8.3568 28 1 3.3223 -7.2830 -9.0268 29 6 1.8194 -3.3573 -1.2258 30 1 -0.3633 0.0042 1.0277 31 1 -0.3633 0.8880 -0.5173 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6585 2.1325 0.0004 34 1 4.1205 2.1324 -0.0092 35 1 5.3517 -0.0003 -0.0109 36 1 4.1205 -2.1325 -0.0022 37 1 2.8789 -3.0889 1.5422 38 1 1.1685 -3.3285 2.0078 39 1 0.9903 -6.7244 0.9759 40 1 1.3042 -5.7779 2.4502 41 1 -0.0257 -5.3148 1.3617 42 1 2.0677 -6.7253 -1.2025 43 1 3.2938 -5.4986 -1.6026 44 1 2.3893 -7.6331 -3.6090 45 1 3.5897 -6.3396 -3.8412 46 1 4.1062 -8.5597 -6.7330 47 1 2.8794 -3.2539 -1.4578 48 1 1.2099 -3.0820 -2.0864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151039211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:56 Heat of formation + Delta-G solvation = 19.447249 kcal Electronic energy + Delta-G solvation = -25648.714126 eV Core-core repulsion = 22280.812416 eV Total energy + Delta-G solvation = -3367.901710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17852 -39.63577 -37.92287 -35.71881 -34.66082 -33.85344 -33.12950 -31.90381 -30.12834 -28.17764 -27.58961 -26.57000 -24.94723 -23.89745 -23.22429 -22.07955 -21.20447 -20.65476 -18.58198 -18.11819 -17.59142 -16.95005 -16.53936 -16.32756 -15.83420 -15.46422 -15.29648 -15.09046 -14.68191 -14.64479 -14.34860 -14.26937 -13.93794 -13.81217 -13.77530 -13.48199 -13.28228 -13.13385 -13.04957 -12.96971 -12.90776 -12.75346 -12.50092 -12.34447 -12.22641 -12.21894 -11.97319 -11.89637 -11.71953 -11.45377 -11.36250 -11.20197 -11.10776 -10.56604 -9.62993 -9.38515 -9.30148 -8.20529 -6.28856 0.50106 0.55015 1.39077 1.41250 1.50474 2.05840 2.13248 2.40600 2.87605 2.95018 3.14893 3.33239 3.64684 3.80199 3.90642 4.06398 4.10978 4.20122 4.25930 4.28185 4.34042 4.38529 4.47436 4.52250 4.61810 4.66415 4.74176 4.76185 4.83210 4.85627 4.89797 4.91662 4.97378 4.99870 5.02784 5.08863 5.17715 5.27963 5.29984 5.37961 5.43647 5.45289 5.59464 5.67130 5.69594 5.77491 5.84909 6.03575 6.08597 6.20225 6.22454 6.81528 6.91713 7.39689 8.90473 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.003352 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.473879 B = 8350.546885 C = 9235.587128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.050 4.050 9 H 0.092 0.908 10 C -0.108 4.108 11 C 0.061 3.939 12 H 0.061 0.939 13 C -0.131 4.131 14 N -0.527 5.527 15 C 0.066 3.934 16 C 0.022 3.978 17 H 0.111 0.889 18 C 0.267 3.733 19 N -0.511 5.511 20 C 0.039 3.961 21 C -0.540 4.540 22 H 0.052 0.948 23 C 0.013 3.987 24 N -0.923 5.923 25 Si 0.947 3.053 26 H -0.283 1.283 27 H -0.265 1.265 28 H -0.277 1.277 29 C 0.042 3.958 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.002 0.998 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.055 0.945 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 18.014 18.103 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.081 4.081 8 C -0.069 4.069 9 H 0.110 0.890 10 C -0.146 4.146 11 C -0.047 4.047 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.252 5.252 15 C -0.063 4.063 16 C 0.001 3.999 17 H 0.128 0.872 18 C -0.050 4.050 19 N -0.189 5.189 20 C 0.001 3.999 21 C -0.578 4.578 22 H 0.071 0.929 23 C -0.186 4.186 24 N -0.562 5.562 25 Si 0.773 3.227 26 H -0.209 1.209 27 H -0.189 1.189 28 H -0.202 1.202 29 C -0.085 4.085 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.020 0.980 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.651 17.262 17.947 24.910 hybrid contribution 1.093 -0.186 -1.310 1.717 sum 0.443 17.076 16.637 23.845 Atomic orbital electron populations 1.20887 0.90545 1.03144 1.02908 1.20032 0.96841 0.92777 0.99781 1.21274 0.94678 0.97845 1.00918 1.21412 0.94481 0.98783 0.99937 1.21374 1.00771 0.92461 1.00524 1.21134 0.93720 0.98702 1.00301 1.19656 0.93721 0.93956 1.00778 1.21048 1.00160 0.90961 0.94740 0.88984 1.22531 1.02523 0.92215 0.97306 1.22435 0.97969 0.96541 0.87745 0.92119 1.21730 0.99235 0.98508 0.99437 1.64712 1.54702 1.03223 1.02551 1.22213 0.96675 0.97115 0.90345 1.19136 0.82013 1.01756 0.97041 0.87175 1.29223 0.94709 0.91204 0.89822 1.80914 1.14497 1.11455 1.11993 1.18981 0.95062 0.93453 0.92451 1.21530 1.19099 1.23548 0.93588 0.92940 1.25698 0.95024 0.94905 1.02978 1.70028 1.25211 1.26362 1.34641 0.85711 0.77870 0.78758 0.80370 1.20933 1.18907 1.20222 1.23329 0.99871 0.87675 0.97651 0.90359 0.90729 0.91557 0.84637 0.84369 0.84722 0.85780 0.90365 0.89972 0.94040 0.90599 0.92933 0.90592 0.91330 0.98008 0.94793 0.92667 0.92661 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.38 71.24 0.67 -1.16 16 2 C -0.09 -1.75 5.88 -19.87 -0.12 -1.86 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 4 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 5 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 6 C -0.12 -2.27 8.13 22.27 0.18 -2.09 16 7 C -0.08 -1.58 4.95 -19.87 -0.10 -1.68 16 8 C -0.05 -1.00 3.02 -10.33 -0.03 -1.03 16 9 H 0.09 1.88 5.62 -2.39 -0.01 1.87 16 10 C -0.11 -1.90 6.03 31.47 0.19 -1.71 16 11 C 0.06 1.27 3.09 45.06 0.14 1.41 16 12 H 0.06 1.21 7.77 -2.39 -0.02 1.19 16 13 C -0.13 -2.69 9.32 71.98 0.67 -2.02 16 14 N -0.53 -13.73 4.63 -858.08 -3.97 -17.71 16 15 C 0.07 1.95 4.05 86.30 0.35 2.30 16 16 C 0.02 0.83 2.17 -12.60 -0.03 0.81 16 17 H 0.11 3.88 6.86 -2.39 -0.02 3.86 16 18 C 0.27 11.33 13.67 89.46 1.22 12.55 16 19 N -0.51 -23.57 18.53 19.99 0.37 -23.20 16 20 C 0.04 1.85 4.42 29.85 0.13 1.98 16 21 C -0.54 -29.03 8.60 25.60 0.22 -28.81 16 22 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 23 C 0.01 0.72 5.46 84.66 0.46 1.18 16 24 N -0.92 -53.29 13.29 21.45 0.28 -53.00 16 25 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 C 0.04 1.01 5.05 86.65 0.44 1.44 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 32 H 0.07 1.12 6.14 -2.39 -0.01 1.11 16 33 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.12 2.17 7.28 -2.91 -0.02 2.15 16 37 H 0.08 1.26 6.83 -2.39 -0.02 1.24 16 38 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 1.84 7.99 -2.39 -0.02 1.82 16 44 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.06 1.29 6.84 -2.39 -0.02 1.27 16 48 H 0.07 1.87 7.57 -2.39 -0.02 1.85 16 Total: -1.00 -64.16 386.05 4.70 -59.46 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.93 Total: 13.14 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.06 Total: -24.52 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.32 Total: -93.91 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.16 4.70 -59.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151039211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.906 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds