Wall clock time and date at job start Fri Apr 10 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47085 * 2 1 4 4 C 1.50702 * 109.46941 * 240.00329 * 2 1 3 5 5 H 1.08007 * 120.00190 * 274.99791 * 4 2 1 6 6 C 1.37874 * 120.00139 * 95.00019 * 4 2 1 7 7 N 1.31512 * 120.00162 * 184.91251 * 6 4 2 8 8 Si 1.86796 * 120.00095 * 4.91030 * 6 4 2 9 9 H 1.48503 * 109.47092 * 84.83245 * 8 6 4 10 10 H 1.48501 * 109.47588 * 204.83587 * 8 6 4 11 11 H 1.48501 * 109.46958 * 324.83795 * 8 6 4 12 12 N 1.46899 * 109.46913 * 120.00596 * 2 1 3 13 13 C 1.46899 * 110.99926 * 274.99685 * 12 2 1 14 14 H 1.09008 * 109.47047 * 34.99955 * 13 12 2 15 15 C 1.52994 * 109.47223 * 275.00349 * 13 12 2 16 16 C 1.52996 * 109.47425 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47012 * 59.99984 * 16 15 13 18 18 C 1.53009 * 109.46882 * 299.99968 * 17 16 15 19 19 C 1.52995 * 109.47138 * 155.00071 * 13 12 2 20 20 H 1.08994 * 109.47212 * 59.99870 * 19 13 12 21 21 N 1.46504 * 109.47223 * 300.00083 * 19 13 12 22 22 C 1.34774 * 120.00094 * 155.00345 * 21 19 13 23 23 O 1.21509 * 120.00123 * 359.97438 * 22 21 19 24 24 O 1.34634 * 120.00015 * 180.02562 * 22 21 19 25 25 C 1.45197 * 117.00015 * 179.97438 * 24 22 21 26 26 C 1.52999 * 109.47390 * 59.99626 * 25 24 22 27 27 C 1.53002 * 109.46986 * 179.97438 * 25 24 22 28 28 C 1.52997 * 109.46890 * 299.99397 * 25 24 22 29 29 H 1.08997 * 109.47010 * 295.03766 * 1 2 3 30 30 H 1.09008 * 109.46873 * 55.03913 * 1 2 3 31 31 H 1.09000 * 109.47288 * 175.03085 * 1 2 3 32 32 H 0.97002 * 120.00215 * 180.02562 * 7 6 4 33 33 H 1.00901 * 111.00047 * 38.95048 * 12 2 1 34 34 H 1.09007 * 109.47302 * 299.99862 * 15 13 12 35 35 H 1.09005 * 109.47560 * 59.99890 * 15 13 12 36 36 H 1.09003 * 109.47494 * 299.99873 * 16 15 13 37 37 H 1.09004 * 109.47542 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.47151 * 180.02562 * 17 16 15 39 39 H 1.08994 * 109.47350 * 59.99815 * 17 16 15 40 40 H 1.08994 * 109.47003 * 300.00060 * 18 17 16 41 41 H 1.08998 * 109.47026 * 180.02562 * 18 17 16 42 42 H 0.97003 * 119.99964 * 335.00059 * 21 19 13 43 43 H 1.08996 * 109.47143 * 60.00038 * 26 25 24 44 44 H 1.09002 * 109.47192 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47054 * 300.00200 * 26 25 24 46 46 H 1.08997 * 109.47105 * 60.00203 * 27 25 24 47 47 H 1.09002 * 109.46872 * 179.97438 * 27 25 24 48 48 H 1.08996 * 109.47141 * 299.99713 * 27 25 24 49 49 H 1.08993 * 109.47115 * 60.00429 * 28 25 24 50 50 H 1.09002 * 109.47201 * 180.02562 * 28 25 24 51 51 H 1.08997 * 109.47669 * 300.00084 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3134 1.8791 -2.3175 9 1 3.5990 2.3950 -1.7822 10 1 2.1056 2.3992 -3.6928 11 1 1.1985 2.3274 -1.4450 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9806 2.3224 16 6 3.4763 1.9341 3.5172 17 6 3.3706 1.1322 4.8159 18 6 2.0418 0.3739 4.8404 19 6 1.9770 -0.5800 3.6453 20 1 2.8018 -1.2903 3.7014 21 7 0.7048 -1.3060 3.6687 22 6 0.5826 -2.4280 4.4054 23 8 1.5278 -2.8377 5.0497 24 8 -0.5864 -3.0955 4.4265 25 6 -0.6454 -4.2960 5.2412 26 6 -0.3500 -3.9380 6.6991 27 6 -2.0422 -4.9122 5.1408 28 6 0.3935 -5.3023 4.7424 29 1 -0.3633 0.4349 0.9311 30 1 -0.3633 0.5889 -0.8423 31 1 -0.3634 -1.0238 -0.0890 32 1 2.9370 -0.1047 -4.2554 33 1 1.4495 -1.4980 1.4099 34 1 4.2360 0.2703 2.3786 35 1 3.4863 1.5523 1.3973 36 1 2.6515 2.6445 3.4606 37 1 4.4231 2.4740 3.5000 38 1 3.4166 1.8115 5.6672 39 1 4.1953 0.4218 4.8725 40 1 1.2171 1.0843 4.7838 41 1 1.9663 -0.1970 5.7658 42 1 -0.0498 -0.9792 3.1541 43 1 -1.0901 -3.2211 7.0543 44 1 -0.3938 -4.8393 7.3106 45 1 0.6450 -3.4987 6.7709 46 1 -2.2531 -5.1673 4.1023 47 1 -2.0864 -5.8137 5.7521 48 1 -2.7821 -4.1952 5.4963 49 1 1.3885 -4.8631 4.8143 50 1 0.3490 -6.2037 5.3537 51 1 0.1831 -5.5574 3.7038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170608614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:06 Heat of formation + Delta-G solvation = -122.600084 kcal Electronic energy + Delta-G solvation = -28169.324651 eV Core-core repulsion = 24487.954386 eV Total energy + Delta-G solvation = -3681.370265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91102 -40.33096 -38.03891 -36.94592 -35.56906 -34.67463 -34.28996 -31.80245 -30.56128 -28.33846 -28.28024 -28.20431 -27.23760 -24.49506 -23.25039 -22.38258 -21.49745 -21.33512 -20.63331 -19.36488 -18.86504 -17.74302 -17.16138 -16.87093 -16.63369 -16.19874 -15.62592 -15.46821 -15.22555 -15.15997 -14.88701 -14.64835 -14.47814 -14.39781 -13.96523 -13.81148 -13.32949 -13.30801 -13.22072 -13.03372 -12.91830 -12.88198 -12.83817 -12.62173 -12.50148 -12.35011 -12.27013 -12.13700 -12.04588 -11.77151 -11.62243 -11.49735 -11.35609 -11.15135 -11.13855 -10.99412 -10.67483 -10.15205 -8.99787 -8.24367 -6.26283 1.17741 1.34873 1.36610 1.45798 1.79173 2.36371 3.03995 3.13457 3.40688 3.64373 3.77941 3.82651 3.97276 3.99144 4.09799 4.20935 4.30691 4.39565 4.44123 4.46774 4.57840 4.58246 4.63746 4.67906 4.74053 4.77787 4.78716 4.85593 4.88464 4.89928 4.93252 4.97220 5.07844 5.15023 5.20904 5.24072 5.26621 5.31052 5.33767 5.37956 5.41707 5.45032 5.56476 5.59860 5.71032 6.09364 6.38897 6.68763 6.75040 6.79446 7.35660 7.37700 8.93484 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.013985 B = 0.004115 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.734381 B = 6802.943798 C = 8203.082429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.040 0.960 4 C -0.494 4.494 5 H 0.026 0.974 6 C 0.009 3.991 7 N -0.953 5.953 8 Si 0.941 3.059 9 H -0.268 1.268 10 H -0.290 1.290 11 H -0.242 1.242 12 N -0.685 5.685 13 C 0.084 3.916 14 H 0.053 0.947 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.119 4.119 19 C 0.171 3.829 20 H 0.074 0.926 21 N -0.701 5.701 22 C 0.650 3.350 23 O -0.588 6.588 24 O -0.372 6.372 25 C 0.124 3.876 26 C -0.176 4.176 27 C -0.136 4.136 28 C -0.182 4.182 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.330 0.670 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.409 0.591 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.093 0.907 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 0.571 22.761 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.058 0.942 4 C -0.533 4.533 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.595 5.595 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.166 1.166 12 N -0.316 5.316 13 C -0.026 4.026 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.158 4.158 19 C 0.068 3.932 20 H 0.093 0.907 21 N -0.360 5.360 22 C 0.403 3.597 23 O -0.478 6.478 24 O -0.286 6.286 25 C 0.088 3.912 26 C -0.234 4.234 27 C -0.193 4.193 28 C -0.239 4.239 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.244 0.756 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.111 0.889 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.712 0.383 22.767 23.739 hybrid contribution -0.865 0.450 -0.971 1.376 sum -7.576 0.833 21.797 23.091 Atomic orbital electron populations 1.22512 0.98913 1.00827 1.00219 1.19494 0.90696 0.94025 0.88156 0.94234 1.21139 1.42148 0.93764 0.96223 0.95610 1.25862 0.94632 1.03473 0.94810 1.70063 1.48879 1.37819 1.02692 0.85842 0.79969 0.80205 0.77441 1.19368 1.21627 1.16555 1.60700 1.58491 1.09317 1.03142 1.21816 0.98318 0.93911 0.88592 0.92957 1.21526 0.96413 0.98027 0.98553 1.21565 1.02960 0.97452 0.93213 1.21476 0.96265 0.98942 0.98085 1.21877 0.99472 0.97807 0.96609 1.21106 0.83907 0.93079 0.95136 0.90746 1.44872 1.16382 1.24817 1.49893 1.18179 0.81596 0.80604 0.79289 1.90876 1.40323 1.69316 1.47332 1.86321 1.34436 1.40400 1.67473 1.22408 0.98319 0.80659 0.89796 1.22447 1.03071 1.03569 0.94273 1.21887 0.92105 1.01541 1.03762 1.22488 0.99864 0.99756 1.01806 0.92488 0.93891 0.93716 0.92736 0.85102 0.92300 0.93330 0.91023 0.90506 0.89510 0.92197 0.90464 0.91927 0.75553 0.91729 0.89035 0.91874 0.91750 0.87795 0.90954 0.92039 0.88870 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 9.14 71.98 0.66 -5.69 16 2 C 0.19 8.23 2.05 44.17 0.09 8.33 16 3 H 0.04 1.76 4.27 -2.39 -0.01 1.75 16 4 C -0.49 -28.13 9.19 25.60 0.24 -27.89 16 5 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 6 C 0.01 0.50 5.47 84.65 0.46 0.97 16 7 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 8 Si 0.94 43.68 26.99 68.60 1.85 45.53 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.24 -10.10 6.82 99.48 0.68 -9.43 16 12 N -0.69 -26.87 6.04 -473.31 -2.86 -29.73 16 13 C 0.08 2.54 1.84 44.91 0.08 2.63 16 14 H 0.05 1.49 7.10 -2.38 -0.02 1.47 16 15 C -0.11 -3.15 5.41 30.59 0.17 -2.99 16 16 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 17 C -0.11 -2.12 5.92 30.60 0.18 -1.93 16 18 C -0.12 -2.56 5.50 30.61 0.17 -2.39 16 19 C 0.17 4.64 2.02 45.01 0.09 4.73 16 20 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 21 N -0.70 -18.50 4.14 -570.06 -2.36 -20.86 16 22 C 0.65 18.89 8.02 129.79 1.04 19.94 16 23 O -0.59 -19.35 11.54 19.81 0.23 -19.12 16 24 O -0.37 -9.76 9.94 -55.43 -0.55 -10.31 16 25 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 26 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 27 C -0.14 -2.00 8.85 71.98 0.64 -1.36 16 28 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 29 H 0.06 1.75 7.38 -2.39 -0.02 1.73 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.33 12.77 7.31 -89.69 -0.66 12.11 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.05 1.63 7.43 -2.38 -0.02 1.62 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.41 9.78 8.71 -92.71 -0.81 8.98 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 51 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.22 389.02 1.21 -68.01 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.58 Total: 37.90 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.19 Total: -11.55 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.92 Total: -110.46 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.32 Total: -29.44 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.85 Total: 45.53 kcal Total: -69.22 1.21 -68.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170608614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.590 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds