Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48502 * 109.47144 * 270.00229 * 3 2 1 5 5 H 1.48498 * 109.46696 * 29.99938 * 3 2 1 6 6 H 1.48493 * 109.47388 * 149.99862 * 3 2 1 7 7 C 1.37878 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00130 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47361 * 185.02484 * 9 7 2 11 11 C 1.46903 * 111.00004 * 61.70198 * 10 9 7 12 12 C 1.53003 * 109.46939 * 66.04649 * 11 10 9 13 13 O 1.42900 * 109.46778 * 65.00057 * 12 11 10 14 14 C 1.42898 * 113.99753 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.53003 * 117.49526 * 243.61618 * 15 14 13 17 17 C 1.52998 * 60.00142 * 252.51027 * 16 15 14 18 18 C 1.46903 * 111.00016 * 297.75038 * 10 9 7 19 19 C 1.52995 * 109.47135 * 287.48282 * 18 10 9 20 20 N 1.46901 * 109.47273 * 181.93527 * 19 18 10 21 21 C 1.47014 * 111.00468 * 293.63838 * 20 19 18 22 22 C 1.53094 * 109.25921 * 177.60114 * 21 20 19 23 23 O 1.43019 * 109.25797 * 56.85166 * 22 21 20 24 24 C 1.43015 * 113.73795 * 301.32848 * 23 22 21 25 25 C 1.47009 * 111.00256 * 169.99948 * 20 19 18 26 26 H 0.96996 * 120.00037 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46722 * 65.02491 * 9 7 2 28 28 H 1.09000 * 109.47419 * 305.02627 * 9 7 2 29 29 H 1.08995 * 109.46871 * 306.05026 * 11 10 9 30 30 H 1.08999 * 109.46949 * 186.04639 * 11 10 9 31 31 H 1.08995 * 109.47062 * 305.00212 * 12 11 10 32 32 H 1.08998 * 109.47050 * 185.00024 * 12 11 10 33 33 H 1.08998 * 109.47654 * 60.00031 * 14 13 12 34 34 H 1.09006 * 109.47097 * 299.99444 * 14 13 12 35 35 H 1.09001 * 115.55076 * 29.32355 * 15 14 13 36 36 H 1.09000 * 117.50138 * 0.02562 * 16 15 14 37 37 H 1.09007 * 117.49311 * 145.01532 * 16 15 14 38 38 H 1.09004 * 117.49650 * 252.51050 * 17 16 15 39 39 H 1.08998 * 117.49589 * 107.49283 * 17 16 15 40 40 H 1.09007 * 109.47169 * 47.48343 * 18 10 9 41 41 H 1.09004 * 109.47347 * 167.48041 * 18 10 9 42 42 H 1.08991 * 109.47477 * 301.93975 * 19 18 10 43 43 H 1.09003 * 109.46987 * 61.94361 * 19 18 10 44 44 H 1.08995 * 109.50450 * 297.53959 * 21 20 19 45 45 H 1.09003 * 109.50253 * 57.67059 * 21 20 19 46 46 H 1.08996 * 109.51237 * 296.91816 * 22 21 20 47 47 H 1.09008 * 109.54081 * 176.80341 * 22 21 20 48 48 H 1.08998 * 109.50349 * 298.73546 * 24 23 22 49 49 H 1.08993 * 109.54647 * 178.62438 * 24 23 22 50 50 H 1.09006 * 109.50940 * 302.33339 * 25 20 19 51 51 H 1.09003 * 109.50834 * 62.41422 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6131 0.1202 11 6 2.9439 -3.5368 1.3853 12 6 1.9816 -3.7507 2.5553 13 8 1.4575 -5.0791 2.5042 14 6 0.5422 -5.3838 3.5584 15 6 0.0482 -6.8237 3.4047 16 6 -1.4437 -7.0340 3.1386 17 6 -0.8542 -7.3824 4.5068 18 6 3.1179 -3.6498 -1.0271 19 6 2.3640 -4.1346 -2.2670 20 7 3.2913 -4.2156 -3.4035 21 6 3.7670 -2.8798 -3.7916 22 6 4.7739 -3.0154 -4.9369 23 8 4.1588 -3.7087 -6.0261 24 6 3.6844 -5.0136 -5.6836 25 6 2.6665 -4.8983 -4.5457 26 1 -0.4850 0.8400 -0.0004 27 1 0.6933 -2.5966 -0.9319 28 1 0.5590 -2.5192 0.8413 29 1 3.4110 -2.5559 1.4737 30 1 3.7134 -4.3086 1.4019 31 1 1.1629 -3.0343 2.4881 32 1 2.5145 -3.6063 3.4951 33 1 -0.3063 -4.7013 3.5116 34 1 1.0450 -5.2732 4.5193 35 1 0.7467 -7.5121 2.9289 36 1 -2.0732 -6.1466 3.0727 37 1 -1.7270 -7.8609 2.4873 38 1 -0.7497 -8.4385 4.7557 39 1 -1.0959 -6.7242 5.3413 40 1 3.5121 -2.6500 -1.2094 41 1 3.9411 -4.3314 -0.8128 42 1 1.9406 -5.1199 -2.0727 43 1 1.5622 -3.4344 -2.5016 44 1 2.9225 -2.2737 -4.1193 45 1 4.2488 -2.4028 -2.9381 46 1 5.6430 -3.5761 -4.5930 47 1 5.0869 -2.0246 -5.2664 48 1 4.5218 -5.6324 -5.3613 49 1 3.2089 -5.4685 -6.5524 50 1 2.3448 -5.8947 -4.2427 51 1 1.8038 -4.3249 -4.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174831364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -54.283591 kcal Electronic energy + Delta-G solvation = -27092.424532 eV Core-core repulsion = 23414.016693 eV Total energy + Delta-G solvation = -3678.407839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.38904 -38.23856 -37.24461 -36.07525 -35.06869 -32.49043 -31.09557 -30.19632 -28.41185 -26.85401 -26.26706 -24.70020 -23.84408 -23.22527 -22.36302 -21.26289 -20.49111 -20.07027 -19.36221 -16.55798 -16.52933 -16.31329 -16.00848 -15.69960 -15.31510 -15.01922 -14.92059 -14.67382 -14.57900 -14.24711 -14.12019 -13.78197 -13.17416 -13.06472 -12.63439 -12.43964 -12.12009 -11.96144 -11.79079 -11.53881 -11.44504 -11.24923 -11.13928 -11.00205 -10.88631 -10.66574 -10.52345 -10.46300 -10.39170 -10.14050 -10.10674 -10.02930 -9.87690 -9.57980 -9.48851 -8.96726 -8.47163 -8.08407 -7.10472 -6.06635 -4.16625 3.22043 3.29937 3.31439 3.72527 3.87499 4.06274 4.14757 4.35165 4.89053 4.94906 4.98278 5.08946 5.18200 5.19016 5.22064 5.23135 5.31622 5.42790 5.47931 5.59108 5.63899 5.65077 5.69105 5.75306 5.80835 5.88835 5.91204 5.92652 5.93597 5.95751 6.09094 6.11155 6.14549 6.16483 6.28671 6.35218 6.55416 6.58522 6.60255 6.76671 7.16011 7.19916 7.31359 7.35318 7.51014 7.74862 7.87601 8.08633 8.27006 8.32200 8.94927 9.50130 10.97269 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.004213 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.034023 B = 6644.930235 C = 9244.330891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.884 3.116 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.184 3.816 10 N -0.533 5.533 11 C 0.069 3.931 12 C 0.070 3.930 13 O -0.370 6.370 14 C 0.091 3.909 15 C -0.145 4.145 16 C -0.176 4.176 17 C -0.180 4.180 18 C 0.067 3.933 19 C 0.066 3.934 20 N -0.537 5.537 21 C 0.015 3.985 22 C 0.065 3.935 23 O -0.390 6.390 24 C 0.066 3.934 25 C 0.018 3.982 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -11.445 -0.240 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.059 3.941 10 N -0.257 5.257 11 C -0.059 4.059 12 C -0.006 4.006 13 O -0.289 6.289 14 C 0.014 3.986 15 C -0.163 4.163 16 C -0.213 4.213 17 C -0.217 4.217 18 C -0.062 4.062 19 C -0.061 4.061 20 N -0.263 5.263 21 C -0.113 4.113 22 C -0.012 4.012 23 O -0.309 6.309 24 C -0.011 4.011 25 C -0.110 4.110 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.111 0.889 50 H 0.102 0.898 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.922 -12.095 -0.409 12.721 hybrid contribution -0.010 2.440 0.304 2.459 sum 3.913 -9.655 -0.105 10.418 Atomic orbital electron populations 1.69941 1.05992 1.26786 1.50057 1.24938 0.94705 0.98987 0.94962 0.86718 0.79974 0.83886 0.78209 1.20626 1.21152 1.19930 1.21727 0.93202 0.92149 1.51698 0.92587 1.19804 0.91313 0.85352 0.97672 1.62358 1.17006 1.46439 0.99879 1.21871 0.94582 0.99807 0.89674 1.22576 0.97363 0.83764 0.96912 1.87958 1.61028 1.31141 1.48729 1.21893 0.92745 0.93517 0.90415 1.22119 0.93627 0.97357 1.03179 1.23040 0.96183 1.03508 0.98613 1.22954 1.04625 1.01449 0.92710 1.21826 0.94393 0.99538 0.90423 1.22032 0.93403 1.01269 0.89446 1.62189 1.39316 1.18517 1.06277 1.22812 0.98889 0.90714 0.98888 1.22688 0.94721 0.97104 0.86693 1.87946 1.77971 1.29470 1.35493 1.22631 0.96579 0.84824 0.97112 1.22733 0.96421 1.00052 0.91827 0.92825 0.95597 0.94681 0.92478 0.92339 0.92081 0.94474 0.93531 0.93892 0.87058 0.88617 0.88833 0.88775 0.88924 0.93697 0.92515 0.90736 0.93961 0.93738 0.89020 0.92524 0.88754 0.92519 0.88896 0.89841 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.39 7.32 -34.44 -0.25 -14.64 16 8 H 0.06 1.46 5.96 -52.48 -0.31 1.14 16 9 C 0.18 4.59 4.77 -4.98 -0.02 4.56 16 10 N -0.53 -11.26 4.61 -236.07 -1.09 -12.34 16 11 C 0.07 1.34 5.14 -3.82 -0.02 1.32 16 12 C 0.07 1.29 6.00 37.16 0.22 1.52 16 13 O -0.37 -6.72 10.29 -35.23 -0.36 -7.08 16 14 C 0.09 1.35 6.22 37.16 0.23 1.59 16 15 C -0.14 -1.87 6.06 -90.61 -0.55 -2.42 16 16 C -0.18 -2.06 10.18 -26.73 -0.27 -2.34 16 17 C -0.18 -1.86 10.25 -26.73 -0.27 -2.14 16 18 C 0.07 1.29 4.70 -3.82 -0.02 1.27 16 19 C 0.07 1.19 4.98 -3.83 -0.02 1.17 16 20 N -0.54 -8.48 4.73 -234.31 -1.11 -9.59 16 21 C 0.02 0.24 5.44 -3.71 -0.02 0.22 16 22 C 0.06 0.86 7.01 37.21 0.26 1.12 16 23 O -0.39 -5.59 10.83 -35.23 -0.38 -5.97 16 24 C 0.07 0.79 7.01 37.21 0.26 1.05 16 25 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.03 0.70 6.69 -51.93 -0.35 0.36 16 28 H 0.04 0.95 6.30 -51.93 -0.33 0.62 16 29 H 0.06 1.17 6.51 -51.93 -0.34 0.83 16 30 H 0.06 1.04 7.86 -51.93 -0.41 0.63 16 31 H 0.06 1.26 6.30 -51.93 -0.33 0.94 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.10 1.15 8.03 -51.93 -0.42 0.73 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.94 4.70 -51.93 -0.24 0.70 16 41 H 0.06 1.03 7.80 -51.93 -0.40 0.63 16 42 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 43 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.48 6.42 -51.93 -0.33 1.15 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 51 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -29.19 394.15 -11.14 -40.33 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -9.27 Total: 3.43 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.59 Total: -5.76 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -1.46 Total: -46.72 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.74 Total: -13.05 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.19 -11.14 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174831364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.954 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds