Wall clock time and date at job start Fri Apr 10 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48502 * 109.47144 * 270.00229 * 3 2 1 5 5 H 1.48498 * 109.46696 * 29.99938 * 3 2 1 6 6 H 1.48493 * 109.47388 * 149.99862 * 3 2 1 7 7 C 1.37878 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00130 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47361 * 185.02484 * 9 7 2 11 11 C 1.46903 * 111.00004 * 61.70198 * 10 9 7 12 12 C 1.53003 * 109.46939 * 66.04649 * 11 10 9 13 13 O 1.42900 * 109.46778 * 65.00057 * 12 11 10 14 14 C 1.42898 * 113.99753 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.53003 * 117.49526 * 243.61618 * 15 14 13 17 17 C 1.52998 * 60.00142 * 252.51027 * 16 15 14 18 18 C 1.46903 * 111.00016 * 297.75038 * 10 9 7 19 19 C 1.52995 * 109.47135 * 287.48282 * 18 10 9 20 20 N 1.46901 * 109.47273 * 181.93527 * 19 18 10 21 21 C 1.47014 * 111.00468 * 293.63838 * 20 19 18 22 22 C 1.53094 * 109.25921 * 177.60114 * 21 20 19 23 23 O 1.43019 * 109.25797 * 56.85166 * 22 21 20 24 24 C 1.43015 * 113.73795 * 301.32848 * 23 22 21 25 25 C 1.47009 * 111.00256 * 169.99948 * 20 19 18 26 26 H 0.96996 * 120.00037 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46722 * 65.02491 * 9 7 2 28 28 H 1.09000 * 109.47419 * 305.02627 * 9 7 2 29 29 H 1.08995 * 109.46871 * 306.05026 * 11 10 9 30 30 H 1.08999 * 109.46949 * 186.04639 * 11 10 9 31 31 H 1.08995 * 109.47062 * 305.00212 * 12 11 10 32 32 H 1.08998 * 109.47050 * 185.00024 * 12 11 10 33 33 H 1.08998 * 109.47654 * 60.00031 * 14 13 12 34 34 H 1.09006 * 109.47097 * 299.99444 * 14 13 12 35 35 H 1.09001 * 115.55076 * 29.32355 * 15 14 13 36 36 H 1.09000 * 117.50138 * 0.02562 * 16 15 14 37 37 H 1.09007 * 117.49311 * 145.01532 * 16 15 14 38 38 H 1.09004 * 117.49650 * 252.51050 * 17 16 15 39 39 H 1.08998 * 117.49589 * 107.49283 * 17 16 15 40 40 H 1.09007 * 109.47169 * 47.48343 * 18 10 9 41 41 H 1.09004 * 109.47347 * 167.48041 * 18 10 9 42 42 H 1.08991 * 109.47477 * 301.93975 * 19 18 10 43 43 H 1.09003 * 109.46987 * 61.94361 * 19 18 10 44 44 H 1.08995 * 109.50450 * 297.53959 * 21 20 19 45 45 H 1.09003 * 109.50253 * 57.67059 * 21 20 19 46 46 H 1.08996 * 109.51237 * 296.91816 * 22 21 20 47 47 H 1.09008 * 109.54081 * 176.80341 * 22 21 20 48 48 H 1.08998 * 109.50349 * 298.73546 * 24 23 22 49 49 H 1.08993 * 109.54647 * 178.62438 * 24 23 22 50 50 H 1.09006 * 109.50940 * 302.33339 * 25 20 19 51 51 H 1.09003 * 109.50834 * 62.41422 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6131 0.1202 11 6 2.9439 -3.5368 1.3853 12 6 1.9816 -3.7507 2.5553 13 8 1.4575 -5.0791 2.5042 14 6 0.5422 -5.3838 3.5584 15 6 0.0482 -6.8237 3.4047 16 6 -1.4437 -7.0340 3.1386 17 6 -0.8542 -7.3824 4.5068 18 6 3.1179 -3.6498 -1.0271 19 6 2.3640 -4.1346 -2.2670 20 7 3.2913 -4.2156 -3.4035 21 6 3.7670 -2.8798 -3.7916 22 6 4.7739 -3.0154 -4.9369 23 8 4.1588 -3.7087 -6.0261 24 6 3.6844 -5.0136 -5.6836 25 6 2.6665 -4.8983 -4.5457 26 1 -0.4850 0.8400 -0.0004 27 1 0.6933 -2.5966 -0.9319 28 1 0.5590 -2.5192 0.8413 29 1 3.4110 -2.5559 1.4737 30 1 3.7134 -4.3086 1.4019 31 1 1.1629 -3.0343 2.4881 32 1 2.5145 -3.6063 3.4951 33 1 -0.3063 -4.7013 3.5116 34 1 1.0450 -5.2732 4.5193 35 1 0.7467 -7.5121 2.9289 36 1 -2.0732 -6.1466 3.0727 37 1 -1.7270 -7.8609 2.4873 38 1 -0.7497 -8.4385 4.7557 39 1 -1.0959 -6.7242 5.3413 40 1 3.5121 -2.6500 -1.2094 41 1 3.9411 -4.3314 -0.8128 42 1 1.9406 -5.1199 -2.0727 43 1 1.5622 -3.4344 -2.5016 44 1 2.9225 -2.2737 -4.1193 45 1 4.2488 -2.4028 -2.9381 46 1 5.6430 -3.5761 -4.5930 47 1 5.0869 -2.0246 -5.2664 48 1 4.5218 -5.6324 -5.3613 49 1 3.2089 -5.4685 -6.5524 50 1 2.3448 -5.8947 -4.2427 51 1 1.8038 -4.3249 -4.8850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174831364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:10 Heat of formation + Delta-G solvation = -74.324080 kcal Electronic energy + Delta-G solvation = -27093.293553 eV Core-core repulsion = 23414.016693 eV Total energy + Delta-G solvation = -3679.276860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58499 -39.58030 -38.63047 -37.28516 -36.44522 -34.54779 -32.21190 -31.61945 -30.05060 -28.53778 -27.48899 -26.27083 -25.06149 -24.95122 -23.23399 -22.66117 -21.59158 -21.30405 -21.08925 -18.48513 -17.81378 -17.73903 -17.15739 -17.04676 -16.83911 -16.30455 -16.23278 -15.96911 -15.96370 -15.56569 -15.37971 -15.27320 -14.65202 -14.46887 -14.16788 -13.98891 -13.52597 -13.34468 -13.16986 -13.06794 -12.82221 -12.72260 -12.39155 -12.38768 -12.32067 -12.29232 -12.02306 -11.90900 -11.77618 -11.66556 -11.62279 -11.38277 -11.28416 -11.04402 -10.66819 -10.58969 -10.30285 -9.45420 -8.93160 -8.14065 -6.34449 1.34379 1.35641 1.45094 2.35342 2.64790 2.65866 2.95836 3.03398 3.09716 3.49827 3.91219 3.92149 3.98587 4.04175 4.05413 4.12779 4.18408 4.20279 4.32379 4.33876 4.38712 4.41882 4.50429 4.57153 4.59610 4.64234 4.69940 4.71509 4.77138 4.78480 4.84620 4.87275 4.94417 4.98772 5.02447 5.03876 5.06603 5.16251 5.25389 5.27382 5.29247 5.36805 5.75472 5.90847 5.97967 6.05775 6.17540 6.26968 6.43340 6.59081 6.88036 7.36826 8.86754 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.004213 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.034023 B = 6644.930235 C = 9244.330891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.206 3.794 10 N -0.535 5.535 11 C 0.069 3.931 12 C 0.077 3.923 13 O -0.387 6.387 14 C 0.087 3.913 15 C -0.165 4.165 16 C -0.186 4.186 17 C -0.153 4.153 18 C 0.074 3.926 19 C 0.079 3.921 20 N -0.532 5.532 21 C 0.015 3.985 22 C 0.071 3.929 23 O -0.405 6.405 24 C 0.067 3.933 25 C 0.015 3.985 26 H 0.263 0.737 27 H -0.005 1.005 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.006 0.994 44 H 0.017 0.983 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.119 0.881 50 H 0.101 0.899 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -12.703 0.012 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.079 3.921 10 N -0.259 5.259 11 C -0.059 4.059 12 C 0.000 4.000 13 O -0.306 6.306 14 C 0.011 3.989 15 C -0.183 4.183 16 C -0.223 4.223 17 C -0.190 4.190 18 C -0.055 4.055 19 C -0.049 4.049 20 N -0.258 5.258 21 C -0.113 4.113 22 C -0.006 4.006 23 O -0.324 6.324 24 C -0.010 4.010 25 C -0.114 4.114 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.024 0.976 44 H 0.036 0.964 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.088 0.912 49 H 0.137 0.863 50 H 0.119 0.881 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.784 -13.372 -0.159 14.570 hybrid contribution -0.622 2.742 0.235 2.822 sum 5.163 -10.630 0.076 11.817 Atomic orbital electron populations 1.70074 1.07628 1.27659 1.51332 1.25754 0.95452 1.02592 0.94693 0.85675 0.78986 0.79511 0.78303 1.20244 1.20929 1.18717 1.21936 0.93338 0.92717 1.50756 0.92264 1.19361 0.91466 0.86525 0.94756 1.62305 1.17590 1.44435 1.01536 1.21939 0.95077 0.99950 0.88950 1.22430 0.96306 0.83431 0.97797 1.87916 1.61758 1.30504 1.50451 1.22072 0.91942 0.94563 0.90336 1.22096 0.94179 0.96162 1.05877 1.23114 0.95166 1.03646 1.00396 1.23064 1.01359 1.02687 0.91901 1.21809 0.94462 0.99067 0.90140 1.21823 0.92724 1.00243 0.90152 1.62244 1.38433 1.18552 1.06524 1.22829 0.98605 0.90230 0.99664 1.22716 0.94027 0.98325 0.85514 1.87933 1.78111 1.30514 1.35865 1.22803 0.96573 0.84226 0.97352 1.22892 0.96529 1.00268 0.91673 0.92801 0.98727 0.97444 0.93641 0.89985 0.95391 0.91632 0.94792 0.92049 0.87402 0.89559 0.87858 0.86633 0.87992 0.95406 0.90524 0.90311 0.97615 0.96424 0.89824 0.91014 0.87229 0.91164 0.86323 0.88122 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 2 C 0.01 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.55 -29.60 7.32 25.60 0.19 -29.41 16 8 H 0.06 3.12 5.96 -2.91 -0.02 3.10 16 9 C 0.21 10.77 4.77 85.56 0.41 11.18 16 10 N -0.53 -23.15 4.61 -900.78 -4.15 -27.30 16 11 C 0.07 2.66 5.14 86.30 0.44 3.10 16 12 C 0.08 2.85 6.00 71.98 0.43 3.28 16 13 O -0.39 -14.07 10.29 -148.98 -1.53 -15.61 16 14 C 0.09 2.57 6.22 71.98 0.45 3.02 16 15 C -0.16 -4.13 6.06 -10.79 -0.07 -4.19 16 16 C -0.19 -4.22 10.18 30.59 0.31 -3.91 16 17 C -0.15 -2.84 10.25 30.59 0.31 -2.52 16 18 C 0.07 2.86 4.70 86.30 0.41 3.27 16 19 C 0.08 2.91 4.98 86.30 0.43 3.34 16 20 N -0.53 -16.63 4.73 -895.24 -4.23 -20.86 16 21 C 0.02 0.48 5.44 86.31 0.47 0.95 16 22 C 0.07 1.78 7.01 72.01 0.50 2.29 16 23 O -0.41 -10.87 10.83 -148.98 -1.61 -12.48 16 24 C 0.07 1.47 7.01 72.02 0.50 1.97 16 25 C 0.01 0.38 5.64 86.32 0.49 0.87 16 26 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 27 H -0.01 -0.31 6.69 -2.39 -0.02 -0.33 16 28 H 0.01 0.43 6.30 -2.39 -0.02 0.42 16 29 H 0.05 1.86 6.51 -2.39 -0.02 1.85 16 30 H 0.08 2.78 7.86 -2.39 -0.02 2.76 16 31 H 0.03 1.21 6.30 -2.39 -0.02 1.20 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.03 1.07 7.88 -2.39 -0.02 1.05 16 34 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.09 2.10 8.03 -2.39 -0.02 2.08 16 37 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.18 4.70 -2.38 -0.01 1.17 16 41 H 0.08 2.68 7.80 -2.39 -0.02 2.66 16 42 H 0.08 2.82 8.04 -2.39 -0.02 2.80 16 43 H 0.01 0.25 6.80 -2.39 -0.02 0.23 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 2.74 6.42 -2.39 -0.02 2.72 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.10 2.30 8.09 -2.38 -0.02 2.28 16 51 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -64.73 394.15 -2.60 -67.33 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.88 Total: 23.92 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.74 Total: -5.51 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -8.10 Total: -102.94 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -3.15 Total: -28.09 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.73 -2.60 -67.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174831364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.999 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds