Wall clock time and date at job start Fri Apr 10 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00247 * 2 1 4 4 C 1.38213 * 120.00085 * 180.22956 * 3 2 1 5 5 C 1.38261 * 120.00063 * 359.81300 * 4 3 2 6 6 C 1.38211 * 119.99827 * 359.97438 * 5 4 3 7 7 C 1.38222 * 119.99744 * 179.78783 * 2 1 3 8 8 C 1.50690 * 120.00275 * 0.02562 * 7 2 1 9 9 H 1.09001 * 110.76552 * 357.08329 * 8 7 2 10 10 C 1.55137 * 110.70921 * 233.88322 * 8 7 2 11 11 C 1.54903 * 101.69081 * 205.98132 * 10 8 7 12 12 H 1.09004 * 110.37492 * 278.21850 * 11 10 8 13 13 C 1.53005 * 110.37297 * 155.99128 * 11 10 8 14 14 N 1.47844 * 104.79595 * 37.04777 * 11 10 8 15 15 C 1.46901 * 111.00038 * 213.63463 * 14 11 10 16 16 C 1.52997 * 109.47173 * 189.99954 * 15 14 11 17 17 H 1.09005 * 109.47227 * 305.00396 * 16 15 14 18 18 C 1.47209 * 109.46969 * 65.00137 * 16 15 14 19 19 N 7.91604 * 106.62149 * 203.76854 * 2 1 3 20 20 C 1.52995 * 109.47227 * 185.00364 * 16 15 14 21 21 C 1.50701 * 109.47229 * 175.00143 * 20 16 15 22 22 H 1.08005 * 120.00025 * 359.97438 * 21 20 16 23 23 C 1.37872 * 119.99959 * 179.97438 * 21 20 16 24 24 N 1.31515 * 120.00087 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00141 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47142 * 90.00017 * 25 23 21 27 27 H 1.48508 * 109.47226 * 209.99976 * 25 23 21 28 28 H 1.48499 * 109.47189 * 329.99622 * 25 23 21 29 29 C 1.47436 * 108.56539 * 335.90605 * 14 11 10 30 30 H 1.08998 * 109.47246 * 264.67556 * 1 2 3 31 31 H 1.09000 * 109.46646 * 24.67937 * 1 2 3 32 32 H 1.09007 * 109.46880 * 144.67046 * 1 2 3 33 33 H 1.07997 * 120.00079 * 0.06128 * 3 2 1 34 34 H 1.08003 * 119.99913 * 179.83875 * 4 3 2 35 35 H 1.08001 * 119.99858 * 180.02562 * 5 4 3 36 36 H 1.08006 * 119.99964 * 179.97438 * 6 5 4 37 37 H 1.09003 * 110.99111 * 87.86876 * 10 8 7 38 38 H 1.09001 * 110.98871 * 324.09434 * 10 8 7 39 39 H 1.08996 * 109.47126 * 61.45260 * 13 11 10 40 40 H 1.09005 * 109.46514 * 181.45636 * 13 11 10 41 41 H 1.08997 * 109.46787 * 301.45083 * 13 11 10 42 42 H 1.09002 * 109.46988 * 310.00282 * 15 14 11 43 43 H 1.08996 * 109.46597 * 70.00437 * 15 14 11 44 44 H 1.09000 * 109.47011 * 294.99971 * 20 16 15 45 45 H 1.08996 * 109.47450 * 55.00226 * 20 16 15 46 46 H 0.97002 * 120.00455 * 180.02562 * 24 23 21 47 47 H 1.09010 * 109.88993 * 120.39640 * 29 14 11 48 48 H 1.08997 * 109.88734 * 241.41796 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1971 -0.0012 7 6 2.1980 -1.1971 0.0044 8 6 1.4446 -2.5021 0.0087 9 1 0.3698 -2.3276 0.0595 10 6 1.9106 -3.4008 1.1842 11 6 1.5862 -4.8162 0.6450 12 1 0.5322 -5.0483 0.7981 13 6 2.4661 -5.8625 1.3320 14 7 1.8940 -4.7496 -0.7995 15 6 0.9797 -5.6009 -1.5724 16 6 1.4768 -5.7045 -3.0157 17 1 1.5954 -4.7040 -3.4318 18 6 2.7726 -6.4026 -3.0395 19 7 3.7713 -6.9419 -3.0572 20 6 0.4606 -6.4867 -3.8501 21 6 0.8886 -6.4837 -5.2951 22 1 1.7946 -5.9745 -5.5890 23 6 0.1236 -7.1312 -6.2420 24 7 0.4974 -7.1290 -7.5029 25 14 -1.4437 -8.0114 -5.7339 26 1 -2.5887 -7.0692 -5.8135 27 1 -1.6837 -9.1601 -6.6441 28 1 -1.3047 -8.5049 -4.3402 29 6 1.8021 -3.3439 -1.2347 30 1 -0.3633 -0.0954 1.0232 31 1 -0.3632 0.9338 -0.4291 32 1 -0.3633 -0.8385 -0.5943 33 1 1.6584 2.1326 0.0010 34 1 4.1204 2.1326 -0.0074 35 1 5.3517 -0.0001 -0.0090 36 1 4.1206 -2.1324 -0.0024 37 1 1.3407 -3.1874 2.0886 38 1 2.9798 -3.2866 1.3630 39 1 2.2654 -5.8593 2.4033 40 1 2.2441 -6.8485 0.9236 41 1 3.5157 -5.6252 1.1582 42 1 0.9458 -6.5954 -1.1275 43 1 -0.0189 -5.1642 -1.5625 44 1 0.4077 -7.5138 -3.4890 45 1 -0.5199 -6.0191 -3.7607 46 1 -0.0410 -7.5842 -8.1692 47 1 2.7603 -3.0177 -1.6396 48 1 1.0252 -3.2403 -1.9921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247448110.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:36 Heat of formation + Delta-G solvation = 36.992163 kcal Electronic energy + Delta-G solvation = -25686.925675 eV Core-core repulsion = 22319.784769 eV Total energy + Delta-G solvation = -3367.140906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38239 -38.76320 -36.41513 -34.09214 -33.39917 -32.69293 -32.20047 -30.81496 -29.31873 -27.10376 -26.76837 -25.66524 -23.85262 -22.47128 -21.51117 -21.35212 -20.29995 -19.76916 -17.07294 -16.79269 -16.59673 -16.27170 -15.43552 -15.16115 -14.64718 -14.33883 -14.09568 -14.06672 -13.68268 -13.56507 -13.25630 -13.20205 -12.85107 -12.65645 -12.50773 -12.40263 -12.30440 -12.17684 -12.03740 -11.90095 -11.50844 -11.39745 -11.30859 -11.26973 -11.21201 -10.96239 -10.70591 -10.66631 -10.56934 -10.37822 -9.90381 -9.72039 -9.31231 -8.89562 -8.68664 -8.61208 -8.23021 -6.09896 -4.10422 1.20462 1.25992 3.25479 3.34587 3.35468 3.58196 3.73424 3.82211 3.94270 4.38545 4.40095 4.56644 4.66652 4.75225 4.77172 4.85544 4.95956 5.02922 5.11335 5.16546 5.23278 5.24881 5.39881 5.41577 5.44466 5.47983 5.51244 5.57948 5.62566 5.64903 5.77497 5.78661 5.84070 5.90774 5.94941 5.99788 6.05973 6.12385 6.26238 6.28725 6.31407 6.37549 6.40153 6.55101 6.88343 6.92171 7.05312 7.14753 7.15118 7.64671 8.41820 8.58970 8.94075 9.49929 11.03261 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.003316 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.266206 B = 8440.985519 C = 8961.205824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.107 4.107 7 C -0.067 4.067 8 C -0.076 4.076 9 H 0.088 0.912 10 C -0.113 4.113 11 C 0.068 3.932 12 H 0.056 0.944 13 C -0.135 4.135 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.021 3.979 17 H 0.104 0.896 18 C 0.255 3.745 19 N -0.472 5.472 20 C -0.005 4.005 21 C -0.527 4.527 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.897 5.897 25 Si 0.877 3.123 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.264 1.264 29 C 0.048 3.952 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.031 0.969 46 H 0.264 0.736 47 H 0.080 0.920 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 15.285 20.933 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.125 4.125 7 C -0.067 4.067 8 C -0.095 4.095 9 H 0.107 0.893 10 C -0.151 4.151 11 C -0.040 4.040 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.250 5.250 15 C -0.074 4.074 16 C -0.001 4.001 17 H 0.121 0.879 18 C -0.062 4.062 19 N -0.149 5.149 20 C -0.044 4.044 21 C -0.565 4.565 22 H 0.092 0.908 23 C -0.131 4.131 24 N -0.535 5.535 25 Si 0.704 3.296 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.189 1.189 29 C -0.080 4.080 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.018 14.200 20.623 25.059 hybrid contribution -1.967 0.062 0.026 1.968 sum -0.949 14.262 20.649 25.113 Atomic orbital electron populations 1.20848 0.91398 1.02928 1.02237 1.19782 0.95962 0.92635 0.99988 1.20992 0.94275 0.97298 1.01363 1.21106 0.94317 0.97993 1.00688 1.21125 0.99841 0.92521 1.00755 1.21055 0.93694 0.98296 0.99465 1.19526 0.93509 0.93638 1.00018 1.21490 0.99721 0.91975 0.96358 0.89341 1.22857 1.02163 0.93198 0.96910 1.22540 0.98109 0.95288 0.88023 0.92601 1.21684 1.00353 0.98491 0.98715 1.63560 1.51558 1.07302 1.02578 1.22436 0.93812 0.98089 0.93056 1.18966 0.86725 0.99548 0.94820 0.87867 1.28630 0.93824 0.92665 0.91087 1.80954 1.12844 1.10628 1.10474 1.19639 0.93475 0.95463 0.95838 1.21026 1.10691 1.35107 0.89628 0.90791 1.24989 0.97708 0.95631 0.94776 1.69907 1.39026 1.43450 1.01125 0.86827 0.83898 0.79828 0.79069 1.20075 1.21305 1.18855 1.23013 1.02285 0.86860 0.95794 0.91317 0.91644 0.90986 0.86329 0.86371 0.86243 0.85708 0.91020 0.90307 0.92700 0.92570 0.92006 0.90300 0.92802 0.95696 0.95067 0.92580 0.90162 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.20 36.00 0.33 -0.57 16 2 C -0.08 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.11 9.68 -39.58 -0.38 -1.50 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.11 -1.11 8.14 -39.58 -0.32 -1.44 16 7 C -0.07 -0.68 4.92 -104.63 -0.52 -1.19 16 8 C -0.08 -0.74 2.89 -89.93 -0.26 -1.00 16 9 H 0.09 0.79 5.77 -51.93 -0.30 0.49 16 10 C -0.11 -1.05 5.87 -24.60 -0.14 -1.19 16 11 C 0.07 0.72 3.01 -66.19 -0.20 0.52 16 12 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 13 C -0.13 -1.41 9.59 37.16 0.36 -1.05 16 14 N -0.53 -6.73 4.52 -223.36 -1.01 -7.74 16 15 C 0.06 0.77 3.90 -3.82 -0.01 0.76 16 16 C 0.02 0.39 2.17 -93.41 -0.20 0.18 16 17 H 0.10 1.81 6.99 -51.93 -0.36 1.45 16 18 C 0.26 5.36 13.67 -20.78 -0.28 5.08 16 19 N -0.47 -10.87 18.53 42.12 0.78 -10.09 16 20 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 21 C -0.53 -14.27 9.15 -34.44 -0.32 -14.59 16 22 H 0.07 2.21 7.84 -52.48 -0.41 1.80 16 23 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 24 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 25 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 29 C 0.05 0.57 5.64 -2.82 -0.02 0.55 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.05 -51.93 -0.42 0.03 16 32 H 0.07 0.56 6.49 -51.93 -0.34 0.22 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.29 7.29 -52.48 -0.38 0.90 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.76 6.71 -51.93 -0.35 0.41 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 43 H 0.05 0.67 7.98 -51.93 -0.41 0.25 16 44 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 45 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.08 1.04 7.07 -51.92 -0.37 0.67 16 48 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -31.63 382.94 -9.77 -41.40 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.84 Total: -0.66 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -3.57 Total: -18.28 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.54 Total: -44.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.63 -9.77 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247448110.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.389 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds