Wall clock time and date at job start Fri Apr 10 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47394 * 2 1 4 4 C 1.36943 * 119.99600 * 263.92036 * 3 2 1 5 5 H 1.08001 * 119.99434 * 142.58109 * 4 3 2 6 6 C 1.38804 * 120.00072 * 322.57234 * 4 3 2 7 7 N 1.31628 * 119.99919 * 157.73773 * 6 4 3 8 8 Si 1.86799 * 120.00320 * 337.73905 * 6 4 3 9 9 H 1.48501 * 109.46828 * 95.72169 * 8 6 4 10 10 H 1.48501 * 109.47249 * 215.71777 * 8 6 4 11 11 H 1.48500 * 109.47075 * 335.72187 * 8 6 4 12 12 C 1.46497 * 119.99939 * 83.91723 * 3 2 1 13 13 H 1.08997 * 108.44771 * 357.68973 * 12 3 2 14 14 C 1.52567 * 108.38787 * 115.31562 * 12 3 2 15 15 C 1.50885 * 109.35179 * 206.17941 * 14 12 3 16 16 C 1.53950 * 110.09692 * 268.10665 * 15 14 12 17 17 N 1.47600 * 112.13682 * 40.56520 * 16 15 14 18 18 C 1.34779 * 118.64547 * 222.13236 * 17 16 15 19 19 O 1.21509 * 119.99820 * 180.02562 * 18 17 16 20 20 O 1.34639 * 119.99668 * 0.02562 * 18 17 16 21 21 C 1.45201 * 116.99881 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.47137 * 59.99759 * 21 20 18 23 23 C 1.52995 * 109.47280 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.46772 * 299.99776 * 21 20 18 25 25 C 1.44276 * 122.59991 * 42.07948 * 17 16 15 26 26 C 1.47094 * 108.51058 * 240.00337 * 12 3 2 27 27 H 1.08993 * 109.47081 * 59.99666 * 1 2 3 28 28 H 1.08996 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46778 * 299.99949 * 1 2 3 30 30 H 1.09000 * 109.47303 * 240.00073 * 2 1 3 31 31 H 1.08998 * 109.47526 * 120.00164 * 2 1 3 32 32 H 0.96995 * 120.00152 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.49250 * 326.14368 * 14 12 3 34 34 H 1.08998 * 109.49247 * 86.19514 * 14 12 3 35 35 H 1.08997 * 109.36825 * 28.30067 * 15 14 12 36 36 H 1.09005 * 109.36547 * 147.91521 * 15 14 12 37 37 H 1.08994 * 108.94794 * 161.25103 * 16 15 14 38 38 H 1.08994 * 108.94504 * 279.97157 * 16 15 14 39 39 H 1.08998 * 109.46941 * 60.00276 * 22 21 20 40 40 H 1.09000 * 109.46676 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47167 * 300.00144 * 22 21 20 42 42 H 1.09002 * 109.47337 * 59.99465 * 23 21 20 43 43 H 1.08992 * 109.47565 * 179.97438 * 23 21 20 44 44 H 1.08998 * 109.47042 * 299.99874 * 23 21 20 45 45 H 1.09000 * 109.46937 * 60.00575 * 24 21 20 46 46 H 1.09004 * 109.46929 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.47365 * 300.00442 * 24 21 20 48 48 H 1.08997 * 109.19125 * 149.16204 * 25 17 16 49 49 H 1.08997 * 109.53833 * 29.35008 * 25 17 16 50 50 H 1.09007 * 109.33097 * 296.36355 * 26 12 3 51 51 H 1.08995 * 109.33187 * 56.01568 * 26 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3650 1.9848 -1.1793 5 1 2.1463 3.0309 -1.3352 6 6 2.9977 1.2522 -2.1742 7 7 2.9442 1.6580 -3.4252 8 14 3.9249 -0.3095 -1.7378 9 1 3.0417 -1.4847 -1.9481 10 1 5.1251 -0.4311 -2.6039 11 1 4.3451 -0.2544 -0.3145 12 6 2.1358 2.1166 1.2616 13 1 1.7745 1.4783 2.0678 14 6 3.6110 2.4189 1.5069 15 6 3.8512 2.5670 2.9891 16 6 3.7078 4.0428 3.4033 17 7 2.5780 4.7045 2.7219 18 6 2.7508 5.9552 2.2504 19 8 1.8370 6.5233 1.6858 20 8 3.9360 6.5751 2.4049 21 6 4.0501 7.9212 1.8727 22 6 3.0207 8.8271 2.5515 23 6 5.4576 8.4579 2.1404 24 6 3.7924 7.8969 0.3647 25 6 1.2976 4.0649 2.5402 26 6 1.2769 3.3085 1.1890 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.3860 1.1459 -4.1205 33 1 4.2190 1.6012 1.1199 34 1 3.8817 3.3450 0.9999 35 1 3.1240 1.9661 3.5350 36 1 4.8565 2.2204 3.2288 37 1 3.5507 4.0944 4.4806 38 1 4.6281 4.5712 3.1545 39 1 3.2043 8.8444 3.6258 40 1 3.1061 9.8374 2.1516 41 1 2.0181 8.4446 2.3603 42 1 6.1907 7.8124 1.6565 43 1 5.5435 9.4681 1.7405 44 1 5.6417 8.4751 3.2146 45 1 2.7898 7.5145 0.1736 46 1 3.8777 8.9075 -0.0348 47 1 4.5257 7.2515 -0.1189 48 1 0.5146 4.8232 2.5436 49 1 1.1234 3.3603 3.3533 50 1 1.6406 3.9679 0.4008 51 1 0.2554 3.0039 0.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252498339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:47 Heat of formation + Delta-G solvation = -57.051504 kcal Electronic energy + Delta-G solvation = -28947.681495 eV Core-core repulsion = 25269.153630 eV Total energy + Delta-G solvation = -3678.527865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.78335 -38.78895 -36.87601 -35.62334 -33.98330 -32.69340 -32.07269 -31.48633 -28.84415 -27.43221 -27.30003 -26.29658 -25.11987 -23.72300 -22.51500 -21.13588 -20.67245 -19.49618 -18.89859 -17.67253 -16.62828 -16.30194 -16.02864 -15.36588 -15.29142 -14.89974 -14.50087 -14.15083 -14.05060 -13.60131 -13.43924 -13.31333 -12.98756 -12.74092 -12.54443 -12.37154 -12.16185 -12.04041 -11.93840 -11.85643 -11.79478 -11.70183 -11.34544 -11.25472 -11.19064 -11.06776 -10.71145 -10.68283 -10.54004 -10.36893 -10.24746 -10.14316 -9.80414 -9.70363 -9.60240 -9.29504 -8.56842 -8.34992 -6.74436 -5.92191 -3.32512 2.37941 3.09102 3.34155 3.49137 3.53426 3.95011 4.57490 4.74113 4.77873 4.85605 4.93161 4.98603 5.21251 5.27152 5.36427 5.42869 5.47188 5.53091 5.58204 5.65417 5.70960 5.77887 5.80712 5.87234 5.90028 5.91663 5.96803 5.98270 6.03196 6.22270 6.23947 6.29735 6.32237 6.38057 6.39682 6.47523 6.53905 6.59825 6.67137 6.81943 6.86547 6.89898 7.07723 7.18279 7.23623 7.55597 8.13774 8.47366 8.59130 9.07764 9.79743 10.20725 11.23828 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.004468 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.822807 B = 6265.823097 C = 6764.603266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.608 5.608 4 C -0.255 4.255 5 H 0.078 0.922 6 C 0.034 3.966 7 N -0.903 5.903 8 Si 0.876 3.124 9 H -0.289 1.289 10 H -0.305 1.305 11 H -0.269 1.269 12 C 0.181 3.819 13 H 0.043 0.957 14 C -0.121 4.121 15 C -0.131 4.131 16 C 0.115 3.885 17 N -0.581 5.581 18 C 0.649 3.351 19 O -0.567 6.567 20 O -0.364 6.364 21 C 0.136 3.864 22 C -0.181 4.181 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.131 3.869 26 C -0.135 4.135 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 8.422 15.948 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.331 5.331 4 C -0.384 4.384 5 H 0.095 0.905 6 C -0.166 4.166 7 N -0.545 5.545 8 Si 0.707 3.293 9 H -0.217 1.217 10 H -0.233 1.233 11 H -0.194 1.194 12 C 0.075 3.925 13 H 0.061 0.939 14 C -0.161 4.161 15 C -0.170 4.170 16 C -0.007 4.007 17 N -0.320 5.320 18 C 0.403 3.597 19 O -0.457 6.457 20 O -0.279 6.279 21 C 0.099 3.901 22 C -0.239 4.239 23 C -0.197 4.197 24 C -0.241 4.241 25 C 0.008 3.992 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.972 8.616 15.596 17.927 hybrid contribution 0.621 -0.969 -0.067 1.153 sum 2.594 7.648 15.530 17.504 Atomic orbital electron populations 1.22281 0.99225 0.99245 1.01529 1.21131 0.92443 0.86881 0.98863 1.44386 1.74988 1.10837 1.02851 1.18686 1.32557 0.96989 0.90165 0.90488 1.25473 0.98031 0.97772 0.95344 1.69882 1.44664 1.40629 0.99336 0.86955 0.79889 0.84124 0.78360 1.21728 1.23291 1.19388 1.19331 0.92488 0.92391 0.88296 0.93870 1.21526 0.98962 1.02618 0.92970 1.21807 1.01916 0.94573 0.98657 1.21951 0.88825 0.94432 0.95483 1.46541 1.14288 1.11842 1.59337 1.18071 0.81259 0.82276 0.78063 1.90880 1.42572 1.65902 1.46306 1.86281 1.34682 1.31172 1.75811 1.22003 0.96340 0.77804 0.93951 1.22502 1.01583 0.99537 1.00230 1.21842 0.94085 1.01066 1.02684 1.22513 1.05238 1.02687 0.93698 1.21463 0.82873 0.96455 0.98387 1.21617 1.01038 0.98525 0.96313 0.92324 0.94494 0.93923 0.92644 0.95071 0.92929 0.91480 0.91931 0.91861 0.91138 0.92309 0.89722 0.92511 0.91425 0.89332 0.91424 0.90384 0.91752 0.89147 0.91500 0.91917 0.90109 0.90702 0.90685 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.23 37.16 0.38 -2.69 16 2 C 0.13 2.84 4.92 -4.04 -0.02 2.82 16 3 N -0.61 -13.92 1.85 -169.19 -0.31 -14.24 16 4 C -0.26 -6.99 8.99 -15.06 -0.14 -7.12 16 5 H 0.08 2.34 6.97 -52.49 -0.37 1.97 16 6 C 0.03 0.96 5.27 -17.43 -0.09 0.87 16 7 N -0.90 -27.78 13.97 55.49 0.78 -27.00 16 8 Si 0.88 22.25 25.03 -169.99 -4.25 18.00 16 9 H -0.29 -7.21 6.69 56.52 0.38 -6.83 16 10 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 11 H -0.27 -6.60 6.91 56.52 0.39 -6.21 16 12 C 0.18 3.41 2.06 -70.99 -0.15 3.27 16 13 H 0.04 0.74 7.04 -51.93 -0.37 0.37 16 14 C -0.12 -2.20 4.62 -28.01 -0.13 -2.33 16 15 C -0.13 -1.73 5.70 -27.30 -0.16 -1.89 16 16 C 0.12 1.44 6.11 -2.94 -0.02 1.42 16 17 N -0.58 -8.63 2.24 -178.57 -0.40 -9.03 16 18 C 0.65 10.67 7.64 54.06 0.41 11.08 16 19 O -0.57 -10.48 11.32 -19.28 -0.22 -10.70 16 20 O -0.36 -5.40 8.39 -40.32 -0.34 -5.74 16 21 C 0.14 1.72 1.13 -90.62 -0.10 1.62 16 22 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 23 C -0.14 -1.33 8.85 37.16 0.33 -1.01 16 24 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 25 C 0.13 1.92 5.36 -4.24 -0.02 1.90 16 26 C -0.14 -2.45 4.86 -28.58 -0.14 -2.59 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.32 3.57 -51.93 -0.19 1.14 16 31 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 1.37 7.85 -51.93 -0.41 0.97 16 34 H 0.06 1.27 7.48 -51.93 -0.39 0.88 16 35 H 0.06 0.77 7.32 -51.93 -0.38 0.39 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.07 6.87 -51.93 -0.36 0.71 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 1.21 7.29 -51.93 -0.38 0.83 16 49 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 50 H 0.07 1.65 6.95 -51.93 -0.36 1.29 16 51 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -31.45 379.35 -7.55 -39.00 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -9.30 Total: 2.66 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 0.78 Total: 1.32 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.06 Total: -50.26 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.56 Total: -16.43 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.25 Total: 18.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.45 -7.55 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252498339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.049 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds