Wall clock time and date at job start Fri Apr 10 2020 18:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47394 * 2 1 4 4 C 1.36943 * 119.99600 * 263.92036 * 3 2 1 5 5 H 1.08001 * 119.99434 * 142.58109 * 4 3 2 6 6 C 1.38804 * 120.00072 * 322.57234 * 4 3 2 7 7 N 1.31628 * 119.99919 * 157.73773 * 6 4 3 8 8 Si 1.86799 * 120.00320 * 337.73905 * 6 4 3 9 9 H 1.48501 * 109.46828 * 95.72169 * 8 6 4 10 10 H 1.48501 * 109.47249 * 215.71777 * 8 6 4 11 11 H 1.48500 * 109.47075 * 335.72187 * 8 6 4 12 12 C 1.46497 * 119.99939 * 83.91723 * 3 2 1 13 13 H 1.08997 * 108.44771 * 357.68973 * 12 3 2 14 14 C 1.52567 * 108.38787 * 115.31562 * 12 3 2 15 15 C 1.50885 * 109.35179 * 206.17941 * 14 12 3 16 16 C 1.53950 * 110.09692 * 268.10665 * 15 14 12 17 17 N 1.47600 * 112.13682 * 40.56520 * 16 15 14 18 18 C 1.34779 * 118.64547 * 222.13236 * 17 16 15 19 19 O 1.21509 * 119.99820 * 180.02562 * 18 17 16 20 20 O 1.34639 * 119.99668 * 0.02562 * 18 17 16 21 21 C 1.45201 * 116.99881 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.47137 * 59.99759 * 21 20 18 23 23 C 1.52995 * 109.47280 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.46772 * 299.99776 * 21 20 18 25 25 C 1.44276 * 122.59991 * 42.07948 * 17 16 15 26 26 C 1.47094 * 108.51058 * 240.00337 * 12 3 2 27 27 H 1.08993 * 109.47081 * 59.99666 * 1 2 3 28 28 H 1.08996 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46778 * 299.99949 * 1 2 3 30 30 H 1.09000 * 109.47303 * 240.00073 * 2 1 3 31 31 H 1.08998 * 109.47526 * 120.00164 * 2 1 3 32 32 H 0.96995 * 120.00152 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.49250 * 326.14368 * 14 12 3 34 34 H 1.08998 * 109.49247 * 86.19514 * 14 12 3 35 35 H 1.08997 * 109.36825 * 28.30067 * 15 14 12 36 36 H 1.09005 * 109.36547 * 147.91521 * 15 14 12 37 37 H 1.08994 * 108.94794 * 161.25103 * 16 15 14 38 38 H 1.08994 * 108.94504 * 279.97157 * 16 15 14 39 39 H 1.08998 * 109.46941 * 60.00276 * 22 21 20 40 40 H 1.09000 * 109.46676 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.47167 * 300.00144 * 22 21 20 42 42 H 1.09002 * 109.47337 * 59.99465 * 23 21 20 43 43 H 1.08992 * 109.47565 * 179.97438 * 23 21 20 44 44 H 1.08998 * 109.47042 * 299.99874 * 23 21 20 45 45 H 1.09000 * 109.46937 * 60.00575 * 24 21 20 46 46 H 1.09004 * 109.46929 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.47365 * 300.00442 * 24 21 20 48 48 H 1.08997 * 109.19125 * 149.16204 * 25 17 16 49 49 H 1.08997 * 109.53833 * 29.35008 * 25 17 16 50 50 H 1.09007 * 109.33097 * 296.36355 * 26 12 3 51 51 H 1.08995 * 109.33187 * 56.01568 * 26 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3650 1.9848 -1.1793 5 1 2.1463 3.0309 -1.3352 6 6 2.9977 1.2522 -2.1742 7 7 2.9442 1.6580 -3.4252 8 14 3.9249 -0.3095 -1.7378 9 1 3.0417 -1.4847 -1.9481 10 1 5.1251 -0.4311 -2.6039 11 1 4.3451 -0.2544 -0.3145 12 6 2.1358 2.1166 1.2616 13 1 1.7745 1.4783 2.0678 14 6 3.6110 2.4189 1.5069 15 6 3.8512 2.5670 2.9891 16 6 3.7078 4.0428 3.4033 17 7 2.5780 4.7045 2.7219 18 6 2.7508 5.9552 2.2504 19 8 1.8370 6.5233 1.6858 20 8 3.9360 6.5751 2.4049 21 6 4.0501 7.9212 1.8727 22 6 3.0207 8.8271 2.5515 23 6 5.4576 8.4579 2.1404 24 6 3.7924 7.8969 0.3647 25 6 1.2976 4.0649 2.5402 26 6 1.2769 3.3085 1.1890 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.3860 1.1459 -4.1205 33 1 4.2190 1.6012 1.1199 34 1 3.8817 3.3450 0.9999 35 1 3.1240 1.9661 3.5350 36 1 4.8565 2.2204 3.2288 37 1 3.5507 4.0944 4.4806 38 1 4.6281 4.5712 3.1545 39 1 3.2043 8.8444 3.6258 40 1 3.1061 9.8374 2.1516 41 1 2.0181 8.4446 2.3603 42 1 6.1907 7.8124 1.6565 43 1 5.5435 9.4681 1.7405 44 1 5.6417 8.4751 3.2146 45 1 2.7898 7.5145 0.1736 46 1 3.8777 8.9075 -0.0348 47 1 4.5257 7.2515 -0.1189 48 1 0.5146 4.8232 2.5436 49 1 1.1234 3.3603 3.3533 50 1 1.6406 3.9679 0.4008 51 1 0.2554 3.0039 0.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252498339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:45 Heat of formation + Delta-G solvation = -75.617686 kcal Electronic energy + Delta-G solvation = -28948.486585 eV Core-core repulsion = 25269.153630 eV Total energy + Delta-G solvation = -3679.332955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.98651 -40.12276 -38.27158 -37.04746 -35.14518 -34.19183 -33.64650 -33.16316 -30.54562 -28.36690 -28.27736 -27.71531 -26.54151 -25.48734 -23.82285 -22.74638 -21.80888 -21.12650 -20.05097 -18.94787 -18.26666 -17.72583 -17.25737 -17.19165 -16.75363 -16.30438 -15.59667 -15.43773 -15.34009 -15.05143 -14.90505 -14.66830 -14.45635 -14.30666 -13.91212 -13.68290 -13.46746 -13.33454 -13.21156 -13.06405 -12.93159 -12.84087 -12.82457 -12.58526 -12.47402 -12.42440 -12.32151 -12.15586 -11.99303 -11.82248 -11.75432 -11.46314 -11.36361 -11.33338 -11.11174 -10.95367 -10.58424 -9.66995 -8.68092 -8.15496 -5.51552 1.25412 1.29851 1.39832 1.51408 1.83974 2.44267 2.88353 3.07474 3.33966 3.76888 3.79609 3.81542 3.96400 4.10461 4.12411 4.23611 4.32252 4.39488 4.49667 4.52980 4.60897 4.61759 4.67500 4.70883 4.73110 4.76292 4.76729 4.79249 4.84045 4.88960 4.90906 5.01782 5.04786 5.12457 5.13551 5.21525 5.28898 5.34868 5.35166 5.36674 5.49952 5.50843 5.55746 5.67508 5.76995 6.01406 6.23515 6.35239 7.07340 7.36461 7.72482 8.11890 9.05571 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.004468 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.822807 B = 6265.823097 C = 6764.603266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 N -0.618 5.618 4 C -0.231 4.231 5 H 0.026 0.974 6 C -0.029 4.029 7 N -0.959 5.959 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.316 1.316 11 H -0.250 1.250 12 C 0.177 3.823 13 H 0.081 0.919 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.114 3.886 17 N -0.582 5.582 18 C 0.639 3.361 19 O -0.597 6.597 20 O -0.366 6.366 21 C 0.125 3.875 22 C -0.174 4.174 23 C -0.133 4.133 24 C -0.182 4.182 25 C 0.141 3.859 26 C -0.125 4.125 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.046 0.954 48 H 0.074 0.926 49 H 0.119 0.881 50 H 0.019 0.981 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 7.294 20.295 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.002 4.002 3 N -0.342 5.342 4 C -0.361 4.361 5 H 0.044 0.956 6 C -0.224 4.224 7 N -0.605 5.605 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.246 1.246 11 H -0.173 1.173 12 C 0.072 3.928 13 H 0.099 0.901 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.007 4.007 17 N -0.321 5.321 18 C 0.394 3.606 19 O -0.489 6.489 20 O -0.280 6.280 21 C 0.088 3.912 22 C -0.231 4.231 23 C -0.190 4.190 24 C -0.239 4.239 25 C 0.018 3.982 26 C -0.165 4.165 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.137 0.863 50 H 0.038 0.962 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.692 7.471 20.010 21.528 hybrid contribution 0.321 -0.509 -1.452 1.571 sum 3.013 6.962 18.559 20.049 Atomic orbital electron populations 1.22152 0.97217 1.00997 1.00940 1.21295 0.94130 0.85604 0.99177 1.44552 1.75147 1.11713 1.02771 1.18397 1.30827 0.94952 0.91912 0.95610 1.26104 0.99468 1.01862 0.94988 1.70036 1.46802 1.43035 1.00590 0.85825 0.77808 0.80313 0.78580 1.20501 1.24583 1.17348 1.19609 0.93313 0.92568 0.87297 0.90077 1.21386 0.97675 0.99701 0.96561 1.21754 1.04089 0.95502 0.94578 1.22142 0.87766 0.93559 0.97215 1.46708 1.15027 1.11410 1.58955 1.18385 0.81396 0.82942 0.77862 1.90870 1.43658 1.66856 1.47473 1.86287 1.33726 1.32305 1.75726 1.22369 0.98779 0.77246 0.92766 1.22426 0.99437 1.00205 1.01072 1.21858 0.91381 1.01948 1.03775 1.22475 1.02388 1.03618 0.95404 1.21394 0.82953 0.96662 0.97203 1.21464 1.00160 0.97775 0.97081 0.95606 0.91547 0.91824 0.95209 0.91618 0.93262 0.93831 0.95634 0.89201 0.88983 0.88467 0.90230 0.91163 0.89179 0.92298 0.91941 0.87988 0.90314 0.92847 0.88901 0.93449 0.90756 0.86350 0.96244 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.23 71.98 0.74 -4.69 16 2 C 0.12 4.98 4.92 86.38 0.42 5.40 16 3 N -0.62 -28.26 1.85 -689.18 -1.27 -29.54 16 4 C -0.23 -13.28 8.99 84.03 0.76 -12.53 16 5 H 0.03 1.74 6.97 -2.91 -0.02 1.72 16 6 C -0.03 -1.76 5.27 84.86 0.45 -1.31 16 7 N -0.96 -62.41 13.97 21.65 0.30 -62.10 16 8 Si 0.95 47.05 25.03 68.60 1.72 48.77 16 9 H -0.28 -13.19 6.69 99.48 0.67 -12.52 16 10 H -0.32 -16.23 7.11 99.48 0.71 -15.52 16 11 H -0.25 -11.49 6.91 99.48 0.69 -10.80 16 12 C 0.18 6.42 2.06 43.01 0.09 6.51 16 13 H 0.08 2.39 7.04 -2.39 -0.02 2.37 16 14 C -0.11 -3.99 4.62 29.76 0.14 -3.86 16 15 C -0.12 -2.70 5.70 30.23 0.17 -2.53 16 16 C 0.11 2.47 6.11 86.49 0.53 3.00 16 17 N -0.58 -16.60 2.24 -949.27 -2.12 -18.72 16 18 C 0.64 21.43 7.64 129.79 0.99 22.42 16 19 O -0.60 -23.35 11.32 19.81 0.22 -23.13 16 20 O -0.37 -10.81 8.39 -55.49 -0.47 -11.28 16 21 C 0.12 3.11 1.13 -10.79 -0.01 3.10 16 22 C -0.17 -3.91 8.37 71.98 0.60 -3.31 16 23 C -0.13 -2.27 8.85 71.98 0.64 -1.63 16 24 C -0.18 -5.26 8.37 71.98 0.60 -4.66 16 25 C 0.14 3.91 5.36 87.43 0.47 4.38 16 26 C -0.12 -4.60 4.86 29.39 0.14 -4.46 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.37 3.57 -2.39 -0.01 1.36 16 31 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 32 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 33 H 0.04 1.72 7.85 -2.39 -0.02 1.70 16 34 H 0.02 1.06 7.48 -2.39 -0.02 1.04 16 35 H 0.09 1.61 7.32 -2.39 -0.02 1.59 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.83 6.87 -2.39 -0.02 1.81 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.70 5.88 -2.39 -0.01 1.69 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.95 5.88 -2.39 -0.01 1.94 16 46 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 48 H 0.07 2.19 7.29 -2.39 -0.02 2.17 16 49 H 0.12 2.32 8.06 -2.39 -0.02 2.30 16 50 H 0.02 0.91 6.95 -2.38 -0.02 0.89 16 51 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.49 379.35 5.93 -70.56 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.82 Total: 19.60 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.72 Total: 5.83 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.09 Total: -110.36 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.24 Total: -34.41 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.72 Total: 48.77 kcal Total: -76.49 5.93 -70.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252498339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.054 kcal (2) G-P(sol) polarization free energy of solvation -76.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds