Wall clock time and date at job start Fri Apr 10 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47401 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47164 * 30.00845 * 3 2 1 6 6 H 1.48500 * 109.46865 * 150.00453 * 3 2 1 7 7 C 1.37873 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00341 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47054 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00007 * 294.21160 * 12 11 10 14 14 C 1.53038 * 109.52605 * 174.16347 * 13 12 11 15 15 C 1.53115 * 109.27792 * 59.17816 * 14 13 12 16 16 O 1.42900 * 109.52392 * 62.25382 * 15 14 13 17 17 C 1.52999 * 109.57409 * 182.41469 * 15 14 13 18 18 N 1.46898 * 109.46828 * 305.43468 * 17 15 14 19 19 C 1.47014 * 111.00300 * 285.71865 * 18 17 15 20 20 C 1.53099 * 109.25494 * 177.60782 * 19 18 17 21 21 O 1.43016 * 109.26223 * 56.85168 * 20 19 18 22 22 C 1.43016 * 113.73310 * 301.32670 * 21 20 19 23 23 C 1.47021 * 110.99704 * 162.08115 * 18 17 15 24 24 C 1.53127 * 109.16037 * 302.34844 * 15 14 13 25 25 C 1.46843 * 110.99883 * 170.00218 * 12 11 10 26 26 H 0.96992 * 120.00137 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46968 * 59.99986 * 9 7 2 28 28 H 1.09004 * 109.47317 * 300.00167 * 9 7 2 29 29 H 1.09005 * 109.47127 * 60.00744 * 10 9 7 30 30 H 1.08991 * 109.47605 * 300.00289 * 10 9 7 31 31 H 1.09005 * 109.46508 * 60.00397 * 11 10 9 32 32 H 1.09000 * 109.46972 * 300.00664 * 11 10 9 33 33 H 1.08999 * 109.46397 * 294.17961 * 13 12 11 34 34 H 1.08998 * 109.46672 * 54.14240 * 13 12 11 35 35 H 1.09000 * 109.49935 * 299.23809 * 14 13 12 36 36 H 1.08994 * 109.53479 * 179.14363 * 14 13 12 37 37 H 0.96698 * 113.99526 * 300.31389 * 16 15 14 38 38 H 1.08998 * 109.47726 * 65.43588 * 17 15 14 39 39 H 1.09003 * 109.47242 * 185.43845 * 17 15 14 40 40 H 1.08998 * 109.50453 * 297.53944 * 19 18 17 41 41 H 1.08999 * 109.50562 * 57.67478 * 19 18 17 42 42 H 1.08997 * 109.50741 * 296.91162 * 20 19 18 43 43 H 1.09009 * 109.50295 * 176.78046 * 20 19 18 44 44 H 1.09000 * 109.50947 * 298.73011 * 22 21 20 45 45 H 1.09008 * 109.54091 * 178.62408 * 22 21 20 46 46 H 1.08991 * 109.50698 * 302.32471 * 23 18 17 47 47 H 1.09001 * 109.50472 * 62.46288 * 23 18 17 48 48 H 1.09004 * 109.49682 * 297.71306 * 24 15 14 49 49 H 1.08996 * 109.53305 * 177.61676 * 24 15 14 50 50 H 1.09002 * 109.46337 * 305.85640 * 25 12 11 51 51 H 1.09008 * 109.46381 * 65.83435 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0027 13 6 5.6876 -4.7051 1.2478 14 6 6.0832 -6.1805 1.1538 15 6 7.5899 -6.2848 0.9017 16 8 8.2990 -5.7145 2.0035 17 6 7.9830 -7.7552 0.7466 18 7 7.5249 -8.5109 1.9200 19 6 8.3670 -8.2273 3.0911 20 6 7.8198 -8.9870 4.3025 21 8 7.7671 -10.3836 3.9990 22 6 6.9548 -10.6958 2.8641 23 6 7.4933 -9.9535 1.6381 24 6 7.9388 -5.5238 -0.3805 25 6 7.4893 -4.0676 -0.2419 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8746 -0.6800 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6586 -3.1502 0.8891 31 1 5.9155 -2.1224 0.8874 32 1 5.9142 -2.1229 -0.8926 33 1 6.2174 -4.2394 2.0788 34 1 4.6131 -4.6271 1.4132 35 1 5.5433 -6.6503 0.3317 36 1 5.8347 -6.6847 2.0876 37 1 8.0964 -4.7822 2.1613 38 1 7.5192 -8.1626 -0.1517 39 1 9.0670 -7.8347 0.6638 40 1 9.3890 -8.5491 2.8910 41 1 8.3554 -7.1570 3.2971 42 1 6.8177 -8.6271 4.5355 43 1 8.4738 -8.8252 5.1594 44 1 5.9275 -10.3857 3.0553 45 1 6.9825 -11.7699 2.6803 46 1 6.8439 -10.1433 0.7836 47 1 8.5014 -10.3029 1.4148 48 1 7.4280 -5.9834 -1.2267 49 1 9.0160 -5.5584 -0.5431 50 1 7.7234 -3.5264 -1.1587 51 1 8.0108 -3.6049 0.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330658842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:01 Heat of formation + Delta-G solvation = -93.358036 kcal Electronic energy + Delta-G solvation = -27316.745194 eV Core-core repulsion = 23636.642959 eV Total energy + Delta-G solvation = -3680.102234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46526 -39.34740 -36.89363 -35.44111 -33.94436 -32.45405 -31.41844 -31.20950 -30.92369 -28.81589 -26.77500 -25.00770 -24.25958 -23.43308 -22.53314 -21.39988 -20.60415 -19.91597 -19.62059 -17.43919 -16.78481 -16.66690 -16.34622 -15.78396 -15.41192 -15.26254 -15.13695 -15.01387 -14.72003 -14.28884 -14.18273 -14.02306 -13.58048 -13.51140 -12.91670 -12.71643 -12.39826 -12.27453 -12.18971 -12.02042 -11.79125 -11.61635 -11.59051 -11.49963 -11.29829 -11.21389 -10.94110 -10.84602 -10.69019 -10.46980 -9.99969 -9.88948 -9.71756 -9.61641 -9.55139 -9.16151 -8.63811 -8.52851 -8.16374 -6.03139 -4.00870 3.30594 3.37890 3.41195 3.41821 3.62368 3.95515 4.00674 4.44817 4.45732 4.63808 4.66095 4.69613 4.76635 4.86625 4.92214 5.02363 5.09453 5.18862 5.22670 5.28381 5.30719 5.30950 5.40224 5.42339 5.47327 5.50895 5.57787 5.63601 5.71406 5.73170 5.81066 5.87469 5.93092 6.06563 6.13241 6.17419 6.28198 6.54657 6.56485 6.67860 6.69202 6.88175 6.91520 7.22996 7.24281 7.36047 7.43360 7.46946 7.81372 8.56137 9.02510 9.59507 11.10492 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002474 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.001196 B =11315.903254 C =11851.990442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.047 3.953 14 C -0.126 4.126 15 C 0.139 3.861 16 O -0.559 6.559 17 C 0.072 3.928 18 N -0.528 5.528 19 C 0.013 3.987 20 C 0.062 3.938 21 O -0.390 6.390 22 C 0.065 3.935 23 C 0.015 3.985 24 C -0.140 4.140 25 C 0.054 3.946 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.371 0.629 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.034 0.966 41 H 0.118 0.882 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.282 -18.628 3.755 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.073 4.073 12 N -0.262 5.262 13 C -0.081 4.081 14 C -0.164 4.164 15 C 0.099 3.901 16 O -0.367 6.367 17 C -0.056 4.056 18 N -0.253 5.253 19 C -0.115 4.115 20 C -0.015 4.015 21 O -0.309 6.309 22 C -0.013 4.013 23 C -0.113 4.113 24 C -0.179 4.179 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.221 0.779 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 19.761 -19.354 3.625 27.897 hybrid contribution 1.196 1.952 0.095 2.291 sum 20.957 -17.402 3.721 27.493 Atomic orbital electron populations 1.69915 1.06296 1.26830 1.51339 1.25043 0.94730 0.99161 0.94662 0.86769 0.80305 0.83667 0.78460 1.20320 1.21440 1.19115 1.21146 0.89515 0.94443 1.50515 0.91029 1.19552 0.97178 0.92350 0.96023 1.21477 0.90908 0.99483 1.01623 1.22311 0.98120 0.86790 1.00092 1.61982 1.12241 1.17086 1.34932 1.22223 1.02280 0.93943 0.89652 1.22073 0.94736 0.95830 1.03768 1.21241 0.91692 0.91617 0.85590 1.86436 1.69348 1.29735 1.51182 1.22092 0.98542 0.91873 0.93046 1.62149 1.52448 1.05886 1.04834 1.23095 0.94103 1.03668 0.90630 1.22729 1.01326 0.80703 0.96757 1.87965 1.70355 1.24566 1.47985 1.22635 0.94498 0.99394 0.84729 1.22811 1.00611 0.88598 0.99277 1.22221 1.01096 0.95978 0.98568 1.22044 0.88509 0.96112 1.00786 0.92777 0.96930 0.97131 0.92004 0.92824 0.95418 0.91262 0.95507 0.89397 0.90568 0.89745 0.77948 0.89519 0.94046 0.94763 0.86468 0.92275 0.88735 0.92157 0.88677 0.89655 0.94251 0.90061 0.91208 0.90474 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.90 5.08 -26.73 -0.14 -2.04 16 11 C 0.05 0.85 4.96 -3.82 -0.02 0.83 16 12 N -0.54 -7.16 4.66 -234.67 -1.09 -8.26 16 13 C 0.05 0.58 5.06 -3.83 -0.02 0.56 16 14 C -0.13 -1.35 4.85 -26.65 -0.13 -1.48 16 15 C 0.14 1.31 0.86 -90.50 -0.08 1.23 16 16 O -0.56 -5.41 9.93 -35.23 -0.35 -5.76 16 17 C 0.07 0.64 4.34 -3.83 -0.02 0.62 16 18 N -0.53 -4.84 3.73 -234.31 -0.87 -5.71 16 19 C 0.01 0.12 5.31 -3.71 -0.02 0.10 16 20 C 0.06 0.56 7.01 37.21 0.26 0.82 16 21 O -0.39 -4.03 10.83 -35.23 -0.38 -4.41 16 22 C 0.06 0.52 7.01 37.21 0.26 0.78 16 23 C 0.02 0.12 5.61 -3.71 -0.02 0.10 16 24 C -0.14 -1.30 5.11 -26.65 -0.14 -1.44 16 25 C 0.05 0.58 5.23 -3.84 -0.02 0.56 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.06 6.43 -51.93 -0.33 0.72 16 31 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 1.07 7.99 -51.93 -0.41 0.66 16 33 H 0.03 0.32 6.84 -51.93 -0.36 -0.04 16 34 H 0.09 1.25 6.21 -51.93 -0.32 0.93 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 37 H 0.37 3.25 5.86 45.56 0.27 3.52 16 38 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.04 0.38 8.02 -51.93 -0.42 -0.03 16 40 H 0.03 0.35 8.13 -51.93 -0.42 -0.07 16 41 H 0.12 1.18 5.25 -51.93 -0.27 0.90 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 47 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 51 H 0.03 0.29 6.85 -51.92 -0.36 -0.07 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -31.28 376.47 -10.38 -41.66 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.84 Total: 0.18 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.62 Total: -13.18 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -1.19 Total: -41.32 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.73 Total: -10.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.28 -10.38 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330658842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.695 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds