Wall clock time and date at job start Fri Apr 10 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47401 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47164 * 30.00845 * 3 2 1 6 6 H 1.48500 * 109.46865 * 150.00453 * 3 2 1 7 7 C 1.37873 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00341 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47054 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00007 * 294.21160 * 12 11 10 14 14 C 1.53038 * 109.52605 * 174.16347 * 13 12 11 15 15 C 1.53115 * 109.27792 * 59.17816 * 14 13 12 16 16 O 1.42900 * 109.52392 * 62.25382 * 15 14 13 17 17 C 1.52999 * 109.57409 * 182.41469 * 15 14 13 18 18 N 1.46898 * 109.46828 * 305.43468 * 17 15 14 19 19 C 1.47014 * 111.00300 * 285.71865 * 18 17 15 20 20 C 1.53099 * 109.25494 * 177.60782 * 19 18 17 21 21 O 1.43016 * 109.26223 * 56.85168 * 20 19 18 22 22 C 1.43016 * 113.73310 * 301.32670 * 21 20 19 23 23 C 1.47021 * 110.99704 * 162.08115 * 18 17 15 24 24 C 1.53127 * 109.16037 * 302.34844 * 15 14 13 25 25 C 1.46843 * 110.99883 * 170.00218 * 12 11 10 26 26 H 0.96992 * 120.00137 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46968 * 59.99986 * 9 7 2 28 28 H 1.09004 * 109.47317 * 300.00167 * 9 7 2 29 29 H 1.09005 * 109.47127 * 60.00744 * 10 9 7 30 30 H 1.08991 * 109.47605 * 300.00289 * 10 9 7 31 31 H 1.09005 * 109.46508 * 60.00397 * 11 10 9 32 32 H 1.09000 * 109.46972 * 300.00664 * 11 10 9 33 33 H 1.08999 * 109.46397 * 294.17961 * 13 12 11 34 34 H 1.08998 * 109.46672 * 54.14240 * 13 12 11 35 35 H 1.09000 * 109.49935 * 299.23809 * 14 13 12 36 36 H 1.08994 * 109.53479 * 179.14363 * 14 13 12 37 37 H 0.96698 * 113.99526 * 300.31389 * 16 15 14 38 38 H 1.08998 * 109.47726 * 65.43588 * 17 15 14 39 39 H 1.09003 * 109.47242 * 185.43845 * 17 15 14 40 40 H 1.08998 * 109.50453 * 297.53944 * 19 18 17 41 41 H 1.08999 * 109.50562 * 57.67478 * 19 18 17 42 42 H 1.08997 * 109.50741 * 296.91162 * 20 19 18 43 43 H 1.09009 * 109.50295 * 176.78046 * 20 19 18 44 44 H 1.09000 * 109.50947 * 298.73011 * 22 21 20 45 45 H 1.09008 * 109.54091 * 178.62408 * 22 21 20 46 46 H 1.08991 * 109.50698 * 302.32471 * 23 18 17 47 47 H 1.09001 * 109.50472 * 62.46288 * 23 18 17 48 48 H 1.09004 * 109.49682 * 297.71306 * 24 15 14 49 49 H 1.08996 * 109.53305 * 177.61676 * 24 15 14 50 50 H 1.09002 * 109.46337 * 305.85640 * 25 12 11 51 51 H 1.09008 * 109.46381 * 65.83435 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0027 13 6 5.6876 -4.7051 1.2478 14 6 6.0832 -6.1805 1.1538 15 6 7.5899 -6.2848 0.9017 16 8 8.2990 -5.7145 2.0035 17 6 7.9830 -7.7552 0.7466 18 7 7.5249 -8.5109 1.9200 19 6 8.3670 -8.2273 3.0911 20 6 7.8198 -8.9870 4.3025 21 8 7.7671 -10.3836 3.9990 22 6 6.9548 -10.6958 2.8641 23 6 7.4933 -9.9535 1.6381 24 6 7.9388 -5.5238 -0.3805 25 6 7.4893 -4.0676 -0.2419 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8889 28 1 3.8746 -0.6800 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6586 -3.1502 0.8891 31 1 5.9155 -2.1224 0.8874 32 1 5.9142 -2.1229 -0.8926 33 1 6.2174 -4.2394 2.0788 34 1 4.6131 -4.6271 1.4132 35 1 5.5433 -6.6503 0.3317 36 1 5.8347 -6.6847 2.0876 37 1 8.0964 -4.7822 2.1613 38 1 7.5192 -8.1626 -0.1517 39 1 9.0670 -7.8347 0.6638 40 1 9.3890 -8.5491 2.8910 41 1 8.3554 -7.1570 3.2971 42 1 6.8177 -8.6271 4.5355 43 1 8.4738 -8.8252 5.1594 44 1 5.9275 -10.3857 3.0553 45 1 6.9825 -11.7699 2.6803 46 1 6.8439 -10.1433 0.7836 47 1 8.5014 -10.3029 1.4148 48 1 7.4280 -5.9834 -1.2267 49 1 9.0160 -5.5584 -0.5431 50 1 7.7234 -3.5264 -1.1587 51 1 8.0108 -3.6049 0.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330658842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:00 Heat of formation + Delta-G solvation = -116.518446 kcal Electronic energy + Delta-G solvation = -27317.749505 eV Core-core repulsion = 23636.642959 eV Total energy + Delta-G solvation = -3681.106545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26496 -40.12276 -37.89878 -36.27457 -35.58397 -34.00165 -32.56142 -32.08354 -31.83497 -29.89777 -28.14994 -26.07683 -24.94179 -24.39121 -23.88015 -22.49094 -21.52640 -21.29996 -20.45569 -18.89110 -18.23910 -17.45057 -17.05104 -16.76269 -16.39739 -16.20392 -16.04594 -15.93674 -15.80367 -15.56392 -15.45062 -15.03801 -14.70099 -14.54336 -14.33193 -13.75209 -13.59724 -13.40539 -13.32684 -13.04028 -12.83375 -12.74772 -12.58084 -12.41359 -12.34376 -12.24950 -12.15908 -11.96843 -11.75709 -11.61501 -11.52096 -11.40424 -11.32369 -11.08298 -10.76338 -10.66394 -10.43171 -9.34542 -9.19722 -8.28917 -6.33284 1.36175 1.38249 1.50276 2.36771 2.73896 2.93818 2.97745 3.06361 3.26732 3.70486 3.84897 3.85609 4.00232 4.07491 4.12245 4.20168 4.22112 4.28878 4.29963 4.36828 4.40233 4.48579 4.55882 4.62256 4.66728 4.68030 4.69598 4.78670 4.85254 4.87730 4.90287 4.95757 4.97877 5.03125 5.03926 5.07342 5.12001 5.22410 5.36699 5.39112 5.53920 5.61975 5.67437 5.98788 6.01465 6.13207 6.20306 6.25577 6.31219 6.73185 6.75310 7.31325 8.88247 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002474 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.001196 B =11315.903254 C =11851.990442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.088 4.088 11 C 0.066 3.934 12 N -0.546 5.546 13 C 0.048 3.952 14 C -0.115 4.115 15 C 0.146 3.854 16 O -0.562 6.562 17 C 0.074 3.926 18 N -0.537 5.537 19 C 0.019 3.981 20 C 0.061 3.939 21 O -0.408 6.408 22 C 0.061 3.939 23 C 0.017 3.983 24 C -0.133 4.133 25 C 0.053 3.947 26 H 0.266 0.734 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.375 0.625 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.026 0.974 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.037 0.963 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.991 -18.240 3.525 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.062 4.062 12 N -0.271 5.271 13 C -0.079 4.079 14 C -0.153 4.153 15 C 0.105 3.895 16 O -0.371 6.371 17 C -0.054 4.054 18 N -0.262 5.262 19 C -0.109 4.109 20 C -0.016 4.016 21 O -0.327 6.327 22 C -0.016 4.016 23 C -0.111 4.111 24 C -0.171 4.171 25 C -0.074 4.074 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.225 0.775 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.075 0.925 45 H 0.131 0.869 46 H 0.117 0.883 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 22.491 -18.991 3.394 29.632 hybrid contribution 0.262 1.726 0.175 1.755 sum 22.754 -17.265 3.569 28.784 Atomic orbital electron populations 1.70079 1.08417 1.28181 1.52799 1.26086 0.95661 1.03741 0.94107 0.85593 0.79481 0.77893 0.79264 1.19047 1.21058 1.16791 1.21522 0.92357 0.92969 1.50268 0.95399 1.19492 0.93694 0.95108 0.96445 1.21286 0.94141 0.96634 1.00507 1.22050 0.94837 0.88502 1.00790 1.61903 1.14291 1.15546 1.35371 1.22177 1.00902 0.95104 0.89756 1.21946 0.95877 0.94336 1.03131 1.21179 0.90454 0.92178 0.85717 1.86449 1.69219 1.30151 1.51258 1.22097 0.98534 0.91416 0.93333 1.62161 1.52406 1.06678 1.04921 1.23002 0.93679 1.03257 0.90956 1.22784 1.01396 0.80280 0.97094 1.87940 1.70819 1.25121 1.48862 1.22788 0.94027 1.00567 0.84205 1.22844 1.00795 0.87820 0.99680 1.22170 1.01907 0.94826 0.98242 1.22122 0.86575 0.97323 1.01422 0.92517 0.96296 0.96186 0.93533 0.93715 0.94790 0.90439 0.94622 0.91862 0.91353 0.90318 0.77466 0.88498 0.94137 0.95593 0.87016 0.92647 0.87573 0.92451 0.86878 0.88299 0.94450 0.90142 0.89742 0.89988 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.43 5.08 30.60 0.16 -3.28 16 11 C 0.07 1.95 4.96 86.31 0.43 2.38 16 12 N -0.55 -13.67 4.66 -896.35 -4.17 -17.84 16 13 C 0.05 1.16 5.06 86.33 0.44 1.60 16 14 C -0.11 -2.34 4.85 30.65 0.15 -2.19 16 15 C 0.15 2.45 0.86 -10.71 -0.01 2.44 16 16 O -0.56 -9.73 9.93 -148.98 -1.48 -11.20 16 17 C 0.07 1.17 4.34 86.30 0.37 1.54 16 18 N -0.54 -9.11 3.73 -895.21 -3.34 -12.45 16 19 C 0.02 0.33 5.31 86.31 0.46 0.79 16 20 C 0.06 1.05 7.01 72.02 0.50 1.56 16 21 O -0.41 -8.07 10.83 -148.98 -1.61 -9.68 16 22 C 0.06 0.91 7.01 72.02 0.50 1.42 16 23 C 0.02 0.24 5.61 86.31 0.48 0.72 16 24 C -0.13 -2.12 5.11 30.65 0.16 -1.96 16 25 C 0.05 1.00 5.23 86.33 0.45 1.45 16 26 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 28 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.04 1.80 6.43 -2.39 -0.02 1.79 16 31 H 0.03 0.97 8.12 -2.38 -0.02 0.95 16 32 H 0.08 2.19 7.99 -2.39 -0.02 2.17 16 33 H 0.04 0.79 6.84 -2.39 -0.02 0.78 16 34 H 0.06 1.83 6.21 -2.39 -0.01 1.81 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.71 7.56 -2.39 -0.02 1.70 16 37 H 0.38 5.71 5.86 -74.06 -0.43 5.27 16 38 H 0.10 1.33 7.89 -2.39 -0.02 1.31 16 39 H 0.04 0.66 8.02 -2.39 -0.02 0.64 16 40 H 0.03 0.50 8.13 -2.39 -0.02 0.48 16 41 H 0.11 2.11 5.25 -2.39 -0.01 2.10 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.10 1.15 8.03 -2.39 -0.02 1.13 16 47 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.08 1.50 8.02 -2.39 -0.02 1.48 16 51 H 0.04 0.67 6.85 -2.38 -0.02 0.65 16 Total: -1.00 -68.27 376.47 -3.10 -71.36 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.40 Total: 18.52 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.93 Total: -24.49 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -7.21 Total: -90.81 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -3.09 Total: -20.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -68.27 -3.10 -71.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330658842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.155 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds