Wall clock time and date at job start Fri Apr 10 2020 18:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47447 * 2 1 4 4 N 1.46507 * 109.47115 * 119.99339 * 2 1 3 5 5 C 1.34771 * 120.00148 * 154.72068 * 4 2 1 6 6 O 1.21284 * 119.99770 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00501 * 180.02562 * 5 4 2 8 8 N 1.46895 * 109.47274 * 180.02562 * 7 5 4 9 9 C 1.46899 * 111.00135 * 294.30440 * 8 7 5 10 10 C 1.53233 * 109.34062 * 172.74945 * 9 8 7 11 11 N 1.47077 * 108.52236 * 53.82918 * 10 9 8 12 12 C 1.37347 * 120.88433 * 128.83814 * 11 10 9 13 13 O 1.35097 * 119.99990 * 179.97438 * 12 11 10 14 14 N 1.30095 * 119.99696 * 359.97438 * 12 11 10 15 15 C 1.46510 * 119.99948 * 185.32453 * 14 12 11 16 16 C 1.50697 * 109.46913 * 115.38479 * 15 14 12 17 17 H 1.08000 * 120.00508 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99600 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00208 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47099 * 119.99936 * 20 18 16 23 23 H 1.48498 * 109.47243 * 240.00097 * 20 18 16 24 24 C 1.47080 * 118.23807 * 308.81511 * 11 10 9 25 25 C 1.46900 * 110.99789 * 170.00122 * 8 7 5 26 26 H 1.09003 * 109.47379 * 300.00507 * 1 2 3 27 27 H 1.09002 * 109.46901 * 60.00299 * 1 2 3 28 28 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47408 * 239.99810 * 2 1 3 30 30 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46813 * 300.00305 * 3 2 1 32 32 H 1.08998 * 109.46803 * 59.99272 * 3 2 1 33 33 H 0.96997 * 119.99777 * 335.00539 * 4 2 1 34 34 H 1.08999 * 109.46978 * 300.00521 * 7 5 4 35 35 H 1.09002 * 109.46590 * 60.00433 * 7 5 4 36 36 H 1.09004 * 109.49302 * 292.70608 * 9 8 7 37 37 H 1.08993 * 109.49366 * 52.78543 * 9 8 7 38 38 H 1.09001 * 109.63148 * 294.12001 * 10 9 8 39 39 H 1.09010 * 109.63181 * 173.53525 * 10 9 8 40 40 H 0.96698 * 113.99657 * 265.07823 * 13 12 11 41 41 H 1.08998 * 109.46817 * 235.38604 * 15 14 12 42 42 H 1.08993 * 109.46758 * 355.38607 * 15 14 12 43 43 H 0.97000 * 119.99569 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.62349 * 291.47568 * 24 11 10 45 45 H 1.08999 * 109.63052 * 170.89577 * 24 11 10 46 46 H 1.09000 * 109.49509 * 307.21583 * 25 8 7 47 47 H 1.09001 * 109.49056 * 67.29470 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2380 -1.2639 1.1927 6 8 3.9314 -1.2079 0.1993 7 6 3.7401 -1.9747 2.4230 8 7 5.0843 -2.5084 2.1659 9 6 5.0466 -3.5575 1.1383 10 6 6.4788 -3.9588 0.7700 11 7 7.1942 -4.3213 2.0028 12 6 7.8753 -5.5101 2.0991 13 8 8.5268 -5.8249 3.2400 14 7 7.8931 -6.3330 1.0916 15 6 8.5194 -7.6499 1.2324 16 6 7.4715 -8.7228 1.0848 17 1 6.4421 -8.4511 0.9037 18 6 7.8273 -10.0516 1.1797 19 7 9.0809 -10.3826 1.3997 20 14 6.5285 -11.3816 0.9960 21 1 5.2054 -10.7516 0.7559 22 1 6.8752 -12.2567 -0.1525 23 1 6.4725 -12.1937 2.2380 24 6 7.1613 -3.3768 3.1298 25 6 5.7022 -2.9984 3.4053 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.4621 -0.7385 1.9895 34 1 3.7813 -1.2734 3.2564 35 1 3.0648 -2.7938 2.6704 36 1 4.5134 -4.4261 1.5248 37 1 4.5351 -3.1808 0.2526 38 1 6.9816 -3.1204 0.2880 39 1 6.4572 -4.8140 0.0943 40 1 9.4650 -5.5907 3.2345 41 1 9.2791 -7.7753 0.4608 42 1 8.9836 -7.7282 2.2154 43 1 9.3311 -11.3174 1.4661 44 1 7.7296 -2.4824 2.8746 45 1 7.5909 -3.8471 4.0144 46 1 5.6662 -2.2162 4.1636 47 1 5.1599 -3.8748 3.7602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331142912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:10 Heat of formation + Delta-G solvation = -32.915025 kcal Electronic energy + Delta-G solvation = -26311.649847 eV Core-core repulsion = 22530.628274 eV Total energy + Delta-G solvation = -3781.021572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27973 -39.06382 -37.61490 -36.15294 -34.39097 -33.54838 -32.07717 -31.77747 -30.82033 -28.84748 -27.61986 -26.80001 -24.86876 -23.62156 -22.56758 -21.66814 -20.69280 -20.52559 -19.18456 -17.57391 -17.27673 -16.50607 -16.23485 -15.77909 -15.55212 -15.14623 -14.89631 -14.69622 -14.61545 -14.47458 -14.30315 -13.83488 -13.46017 -13.37451 -13.15029 -12.73897 -12.54288 -12.28781 -12.23744 -12.10108 -11.83354 -11.76555 -11.36366 -11.21124 -11.15126 -11.04851 -10.93461 -10.65608 -10.55002 -10.06336 -9.91500 -9.78801 -9.37009 -9.21631 -8.52276 -8.39076 -8.00836 -7.02542 -5.92497 -3.94294 2.47573 2.76944 3.21253 3.33120 3.35898 3.42628 3.50438 3.88613 4.38511 4.53306 4.60854 4.66243 4.81081 4.85489 4.96442 5.00629 5.08484 5.16141 5.23247 5.29480 5.37689 5.38061 5.41243 5.45551 5.53779 5.58023 5.71339 5.72402 5.87119 5.89803 5.97224 6.11561 6.23297 6.31371 6.53971 6.80043 6.97094 7.26578 7.30839 7.48807 7.64164 7.86206 8.03948 8.06710 8.29887 8.47920 9.07218 9.41360 9.71620 11.16469 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002670 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.688800 B =10485.063507 C =11478.985146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.163 4.163 4 N -0.733 5.733 5 C 0.514 3.486 6 O -0.515 6.515 7 C 0.036 3.964 8 N -0.520 5.520 9 C 0.036 3.964 10 C 0.149 3.851 11 N -0.616 5.616 12 C 0.513 3.487 13 O -0.528 6.528 14 N -0.577 5.577 15 C 0.196 3.804 16 C -0.496 4.496 17 H 0.059 0.941 18 C 0.053 3.947 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.134 3.866 25 C 0.043 3.957 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.390 0.610 41 H 0.032 0.968 42 H 0.009 0.991 43 H 0.260 0.740 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 24.843 4.191 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.221 4.221 4 N -0.387 5.387 5 C 0.300 3.700 6 O -0.389 6.389 7 C -0.096 4.096 8 N -0.245 5.245 9 C -0.092 4.092 10 C 0.026 3.974 11 N -0.348 5.348 12 C 0.198 3.802 13 O -0.329 6.329 14 N -0.316 5.316 15 C 0.069 3.931 16 C -0.535 4.535 17 H 0.077 0.923 18 C -0.148 4.148 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C 0.009 3.991 25 C -0.086 4.086 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.245 0.755 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.631 24.750 2.718 28.880 hybrid contribution -0.590 -1.435 1.398 2.088 sum -15.221 23.315 4.116 28.147 Atomic orbital electron populations 1.22079 0.94227 1.02660 1.02862 1.20910 0.93808 0.93055 0.89008 1.22180 1.02320 0.95747 1.01891 1.46135 1.18215 1.57560 1.16808 1.20611 0.80951 0.78550 0.89899 1.90701 1.55440 1.58208 1.34579 1.21952 0.91864 0.99541 0.96228 1.61677 1.17625 1.35951 1.09265 1.22749 0.98783 0.91686 0.95969 1.21422 0.89168 1.00787 0.86004 1.46227 1.56612 1.16804 1.15163 1.20234 0.91624 0.86971 0.81328 1.84717 1.26352 1.82424 1.39373 1.72234 1.28758 1.07252 1.23403 1.19472 0.94700 0.82557 0.96380 1.21162 0.94722 0.89923 1.47673 0.92317 1.24986 0.95550 0.98591 0.95663 1.69967 1.16278 1.17394 1.50425 0.86417 0.81784 0.81546 0.77533 1.19787 1.20970 1.21101 1.21416 0.94960 0.92482 0.90247 1.22537 0.96141 0.98846 0.91083 0.92140 0.90945 0.91949 0.89394 0.91906 0.91741 0.92635 0.76863 0.87985 0.91987 0.94729 0.88377 0.91972 0.87770 0.75456 0.95070 0.97315 0.93068 0.91861 0.89505 0.90043 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.38 37.16 0.35 -0.38 16 2 C 0.14 0.95 3.19 -67.92 -0.22 0.73 16 3 C -0.16 -1.09 9.49 37.16 0.35 -0.74 16 4 N -0.73 -5.14 5.08 -53.80 -0.27 -5.41 16 5 C 0.51 5.28 7.46 -10.99 -0.08 5.20 16 6 O -0.52 -7.43 13.99 5.55 0.08 -7.36 16 7 C 0.04 0.32 5.45 -4.98 -0.03 0.29 16 8 N -0.52 -6.31 4.37 -235.77 -1.03 -7.34 16 9 C 0.04 0.53 5.26 -3.70 -0.02 0.51 16 10 C 0.15 2.46 6.61 -3.61 -0.02 2.43 16 11 N -0.62 -10.42 3.08 -175.06 -0.54 -10.96 16 12 C 0.51 10.65 8.36 -88.56 -0.74 9.91 16 13 O -0.53 -10.13 10.71 -16.99 -0.18 -10.31 16 14 N -0.58 -14.32 9.15 -63.70 -0.58 -14.90 16 15 C 0.20 5.61 6.09 -5.19 -0.03 5.58 16 16 C -0.50 -15.23 9.39 -34.44 -0.32 -15.55 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.96 13.29 55.43 0.74 -27.23 16 20 Si 0.90 22.83 29.54 -169.99 -5.02 17.81 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.13 1.72 6.64 -3.60 -0.02 1.70 16 25 C 0.04 0.48 5.62 -3.70 -0.02 0.46 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.81 7.57 -51.93 -0.39 0.41 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 1.65 8.60 -40.82 -0.35 1.30 16 34 H 0.10 0.66 7.97 -51.93 -0.41 0.24 16 35 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.47 5.76 -51.93 -0.30 1.17 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.97 6.97 -51.92 -0.36 1.61 16 40 H 0.39 5.68 9.06 45.56 0.41 6.09 16 41 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.01 0.26 6.73 -51.93 -0.35 -0.09 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 1.07 7.03 -51.93 -0.37 0.71 16 46 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -37.43 380.41 -9.14 -46.57 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.15 Total: 1.76 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.91 Total: 11.63 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -1.69 Total: -65.84 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.10 Total: -17.67 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.43 -9.14 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.655 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds