Wall clock time and date at job start Fri Apr 10 2020 18:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47447 * 2 1 4 4 N 1.46507 * 109.47115 * 119.99339 * 2 1 3 5 5 C 1.34771 * 120.00148 * 154.72068 * 4 2 1 6 6 O 1.21284 * 119.99770 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00501 * 180.02562 * 5 4 2 8 8 N 1.46895 * 109.47274 * 180.02562 * 7 5 4 9 9 C 1.46899 * 111.00135 * 294.30440 * 8 7 5 10 10 C 1.53233 * 109.34062 * 172.74945 * 9 8 7 11 11 N 1.47077 * 108.52236 * 53.82918 * 10 9 8 12 12 C 1.37347 * 120.88433 * 128.83814 * 11 10 9 13 13 O 1.35097 * 119.99990 * 179.97438 * 12 11 10 14 14 N 1.30095 * 119.99696 * 359.97438 * 12 11 10 15 15 C 1.46510 * 119.99948 * 185.32453 * 14 12 11 16 16 C 1.50697 * 109.46913 * 115.38479 * 15 14 12 17 17 H 1.08000 * 120.00508 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99600 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00208 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47250 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47099 * 119.99936 * 20 18 16 23 23 H 1.48498 * 109.47243 * 240.00097 * 20 18 16 24 24 C 1.47080 * 118.23807 * 308.81511 * 11 10 9 25 25 C 1.46900 * 110.99789 * 170.00122 * 8 7 5 26 26 H 1.09003 * 109.47379 * 300.00507 * 1 2 3 27 27 H 1.09002 * 109.46901 * 60.00299 * 1 2 3 28 28 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47408 * 239.99810 * 2 1 3 30 30 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46813 * 300.00305 * 3 2 1 32 32 H 1.08998 * 109.46803 * 59.99272 * 3 2 1 33 33 H 0.96997 * 119.99777 * 335.00539 * 4 2 1 34 34 H 1.08999 * 109.46978 * 300.00521 * 7 5 4 35 35 H 1.09002 * 109.46590 * 60.00433 * 7 5 4 36 36 H 1.09004 * 109.49302 * 292.70608 * 9 8 7 37 37 H 1.08993 * 109.49366 * 52.78543 * 9 8 7 38 38 H 1.09001 * 109.63148 * 294.12001 * 10 9 8 39 39 H 1.09010 * 109.63181 * 173.53525 * 10 9 8 40 40 H 0.96698 * 113.99657 * 265.07823 * 13 12 11 41 41 H 1.08998 * 109.46817 * 235.38604 * 15 14 12 42 42 H 1.08993 * 109.46758 * 355.38607 * 15 14 12 43 43 H 0.97000 * 119.99569 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.62349 * 291.47568 * 24 11 10 45 45 H 1.08999 * 109.63052 * 170.89577 * 24 11 10 46 46 H 1.09000 * 109.49509 * 307.21583 * 25 8 7 47 47 H 1.09001 * 109.49056 * 67.29470 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2380 -1.2639 1.1927 6 8 3.9314 -1.2079 0.1993 7 6 3.7401 -1.9747 2.4230 8 7 5.0843 -2.5084 2.1659 9 6 5.0466 -3.5575 1.1383 10 6 6.4788 -3.9588 0.7700 11 7 7.1942 -4.3213 2.0028 12 6 7.8753 -5.5101 2.0991 13 8 8.5268 -5.8249 3.2400 14 7 7.8931 -6.3330 1.0916 15 6 8.5194 -7.6499 1.2324 16 6 7.4715 -8.7228 1.0848 17 1 6.4421 -8.4511 0.9037 18 6 7.8273 -10.0516 1.1797 19 7 9.0809 -10.3826 1.3997 20 14 6.5285 -11.3816 0.9960 21 1 5.2054 -10.7516 0.7559 22 1 6.8752 -12.2567 -0.1525 23 1 6.4725 -12.1937 2.2380 24 6 7.1613 -3.3768 3.1298 25 6 5.7022 -2.9984 3.4053 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.4621 -0.7385 1.9895 34 1 3.7813 -1.2734 3.2564 35 1 3.0648 -2.7938 2.6704 36 1 4.5134 -4.4261 1.5248 37 1 4.5351 -3.1808 0.2526 38 1 6.9816 -3.1204 0.2880 39 1 6.4572 -4.8140 0.0943 40 1 9.4650 -5.5907 3.2345 41 1 9.2791 -7.7753 0.4608 42 1 8.9836 -7.7282 2.2154 43 1 9.3311 -11.3174 1.4661 44 1 7.7296 -2.4824 2.8746 45 1 7.5909 -3.8471 4.0144 46 1 5.6662 -2.2162 4.1636 47 1 5.1599 -3.8748 3.7602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331142912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:09 Heat of formation + Delta-G solvation = -65.685242 kcal Electronic energy + Delta-G solvation = -26313.070870 eV Core-core repulsion = 22530.628274 eV Total energy + Delta-G solvation = -3782.442595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16373 -40.37765 -38.87732 -36.90440 -35.73574 -35.53130 -33.83491 -32.65132 -32.03714 -30.09442 -28.60056 -28.07321 -26.16813 -24.83778 -24.36757 -22.40165 -21.93881 -21.39726 -20.60698 -18.96724 -18.53270 -18.07154 -17.39610 -17.02414 -16.80290 -16.58493 -16.22173 -15.85375 -15.63764 -15.54494 -15.32407 -15.07681 -14.64334 -14.44198 -14.24590 -14.08045 -13.88450 -13.26330 -13.12076 -13.04847 -12.98498 -12.87983 -12.72885 -12.59548 -12.34490 -12.25884 -12.22462 -12.09819 -11.90172 -11.87163 -11.78972 -11.16984 -10.75637 -10.64614 -10.04922 -9.98027 -9.38655 -8.71064 -8.17256 -6.34160 1.34642 1.37315 1.49718 1.60777 1.71132 1.83888 2.13791 2.40323 2.96695 3.07308 3.50308 3.79474 3.88504 4.01472 4.09682 4.12949 4.20191 4.28457 4.32785 4.35418 4.46009 4.49144 4.59399 4.70833 4.76132 4.78072 4.82474 4.89809 4.94920 5.01679 5.06605 5.11439 5.19944 5.27938 5.35002 5.36510 5.62565 5.67139 5.84669 5.96147 6.02499 6.17840 6.33292 6.66480 6.71331 6.77821 7.29576 7.37681 7.71913 8.87446 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002670 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.688800 B =10485.063507 C =11478.985146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.717 5.717 5 C 0.510 3.490 6 O -0.565 6.565 7 C 0.037 3.963 8 N -0.529 5.529 9 C 0.052 3.948 10 C 0.149 3.851 11 N -0.607 5.607 12 C 0.535 3.465 13 O -0.534 6.534 14 N -0.625 5.625 15 C 0.216 3.784 16 C -0.526 4.526 17 H 0.045 0.955 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.974 3.026 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.126 3.874 25 C 0.048 3.952 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.415 0.585 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.019 0.981 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.412 0.588 41 H -0.002 1.002 42 H -0.010 1.010 43 H 0.267 0.733 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.146 26.359 6.231 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.371 5.371 5 C 0.296 3.704 6 O -0.443 6.443 7 C -0.094 4.094 8 N -0.254 5.254 9 C -0.077 4.077 10 C 0.026 3.974 11 N -0.339 5.339 12 C 0.221 3.779 13 O -0.338 6.338 14 N -0.368 5.368 15 C 0.087 3.913 16 C -0.564 4.564 17 H 0.063 0.937 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.197 1.197 24 C 0.003 3.997 25 C -0.081 4.081 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.252 0.748 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.271 0.729 41 H 0.016 0.984 42 H 0.008 0.992 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.141 0.859 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.977 26.347 4.820 31.711 hybrid contribution 0.120 -1.709 0.845 1.910 sum -16.856 24.638 5.665 30.385 Atomic orbital electron populations 1.22020 0.91880 1.02946 1.04141 1.20956 0.95535 0.92787 0.87908 1.22124 1.00441 0.95779 1.03212 1.46027 1.17358 1.56236 1.17511 1.20941 0.81383 0.78366 0.89683 1.90689 1.57039 1.60278 1.36337 1.22082 0.90277 1.00430 0.96564 1.61624 1.19965 1.34595 1.09176 1.22445 0.96574 0.91871 0.96776 1.21376 0.90801 0.99626 0.85601 1.46521 1.54988 1.15831 1.16524 1.20368 0.89923 0.86978 0.80622 1.84634 1.28090 1.82875 1.38219 1.72187 1.32140 1.06802 1.25684 1.18993 0.93576 0.84766 0.93926 1.21425 0.94589 0.91476 1.48918 0.93654 1.25950 0.98082 1.00964 0.94658 1.70077 1.18234 1.18398 1.50410 0.85277 0.78586 0.78117 0.78252 1.19463 1.19652 1.19665 1.21794 0.96998 0.92002 0.88898 1.22574 0.94252 0.99851 0.91384 0.90342 0.90194 0.92149 0.92275 0.94674 0.90742 0.91019 0.74826 0.84362 0.90540 0.96264 0.89063 0.91372 0.90885 0.72857 0.98440 0.99182 0.92445 0.90072 0.88618 0.85872 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.38 71.98 0.68 -0.36 16 2 C 0.13 1.70 3.19 44.99 0.14 1.85 16 3 C -0.16 -1.92 9.49 71.98 0.68 -1.24 16 4 N -0.72 -8.69 5.08 -442.53 -2.25 -10.94 16 5 C 0.51 9.79 7.46 87.66 0.65 10.44 16 6 O -0.57 -16.46 13.99 -3.04 -0.04 -16.50 16 7 C 0.04 0.56 5.45 85.56 0.47 1.02 16 8 N -0.53 -11.72 4.37 -899.85 -3.93 -15.65 16 9 C 0.05 1.52 5.26 86.38 0.45 1.97 16 10 C 0.15 5.02 6.61 86.35 0.57 5.59 16 11 N -0.61 -20.36 3.08 -818.23 -2.52 -22.88 16 12 C 0.54 22.57 8.36 179.63 1.50 24.07 16 13 O -0.53 -20.40 10.71 -83.72 -0.90 -21.30 16 14 N -0.63 -32.48 9.15 -469.71 -4.30 -36.78 16 15 C 0.22 12.99 6.09 85.63 0.52 13.51 16 16 C -0.53 -33.46 9.39 25.60 0.24 -33.22 16 17 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 18 C 0.00 0.08 5.46 84.66 0.46 0.55 16 19 N -0.93 -58.88 13.29 21.45 0.28 -58.59 16 20 Si 0.97 47.29 29.54 68.60 2.03 49.32 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 C 0.13 2.94 6.64 86.35 0.57 3.51 16 25 C 0.05 0.92 5.62 86.38 0.49 1.40 16 26 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 1.12 7.57 -2.39 -0.02 1.10 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.41 2.15 8.60 -92.71 -0.80 1.35 16 34 H 0.14 1.11 7.97 -2.39 -0.02 1.09 16 35 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 2.81 5.76 -2.39 -0.01 2.80 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 2.94 6.97 -2.38 -0.02 2.92 16 40 H 0.41 11.80 9.06 -74.06 -0.67 11.13 16 41 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H -0.01 -0.60 6.73 -2.39 -0.02 -0.61 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 2.10 7.03 -2.39 -0.02 2.08 16 46 H 0.12 1.42 7.99 -2.39 -0.02 1.40 16 47 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -85.42 380.41 -4.69 -90.10 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.49 Total: 14.11 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 7.43 Total: 29.09 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -12.71 Total: -144.84 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.94 Total: -37.79 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -85.42 -4.69 -90.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331142912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.419 kcal (2) G-P(sol) polarization free energy of solvation -85.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds