Wall clock time and date at job start Fri Apr 10 2020 18:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99972 * 2 1 4 4 H 1.09003 * 109.47048 * 30.00152 * 3 2 1 5 5 C 1.53004 * 109.47138 * 269.99865 * 3 2 1 6 6 C 1.52996 * 109.46993 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47332 * 59.99913 * 6 5 3 8 8 C 1.52996 * 109.47038 * 300.00174 * 7 6 5 9 9 C 1.52994 * 109.46856 * 149.99964 * 3 2 1 10 10 H 1.09002 * 109.47448 * 299.99829 * 9 3 2 11 11 N 1.46500 * 109.47443 * 60.00012 * 9 3 2 12 12 C 1.34773 * 120.00432 * 204.99571 * 11 9 3 13 13 O 1.21353 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.49454 * 120.00135 * 179.72278 * 12 11 9 15 15 O 1.21343 * 119.99752 * 0.28157 * 14 12 11 16 16 N 1.34777 * 120.00164 * 180.27489 * 14 12 11 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46671 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46661 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.46885 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00286 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00114 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99465 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00149 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47229 * 60.00369 * 24 22 20 26 26 H 1.48498 * 109.47080 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47153 * 299.99916 * 24 22 20 28 28 H 1.08997 * 109.46836 * 299.99829 * 1 2 3 29 29 H 1.09002 * 109.46768 * 60.00198 * 1 2 3 30 30 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46656 * 59.99912 * 5 3 2 32 32 H 1.08998 * 109.46712 * 300.00257 * 5 3 2 33 33 H 1.09003 * 109.47061 * 300.00206 * 6 5 3 34 34 H 1.08994 * 109.47099 * 180.02562 * 6 5 3 35 35 H 1.08994 * 109.47021 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46808 * 60.00138 * 7 6 5 37 37 H 1.09003 * 109.47292 * 299.99668 * 8 7 6 38 38 H 1.08998 * 109.46919 * 179.97438 * 8 7 6 39 39 H 0.97001 * 119.99454 * 25.00306 * 11 9 3 40 40 H 0.97000 * 119.99555 * 0.02562 * 16 14 12 41 41 H 1.08994 * 109.46952 * 300.00262 * 17 16 14 42 42 H 1.08992 * 109.46844 * 60.00609 * 17 16 14 43 43 H 1.08994 * 109.47336 * 299.99647 * 18 17 16 44 44 H 1.08992 * 109.47300 * 60.00508 * 18 17 16 45 45 H 1.09008 * 109.46807 * 299.99899 * 19 18 17 46 46 H 1.08998 * 109.47208 * 59.99706 * 19 18 17 47 47 H 0.96997 * 119.99506 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7214 8 6 3.9818 2.6601 0.7211 9 6 3.3588 1.2632 0.7212 10 1 3.2111 0.9313 1.7489 11 7 4.2530 0.3306 0.0307 12 6 5.2613 -0.2592 0.7030 13 8 5.4282 -0.0181 1.8805 14 6 6.1696 -1.2154 -0.0001 15 8 6.0025 -1.4568 -1.1774 16 7 7.1745 -1.8094 0.6736 17 6 8.0653 -2.7463 -0.0157 18 6 9.1104 -3.2744 0.9690 19 6 10.0411 -4.2523 0.2490 20 6 11.0702 -4.7730 1.2190 21 1 11.0616 -4.4394 2.2461 22 6 12.0228 -5.6753 0.7951 23 7 12.0335 -6.0810 -0.4559 24 14 13.2988 -6.3201 1.9973 25 1 12.6164 -7.0181 3.1163 26 1 14.2020 -7.2693 1.2985 27 1 14.0928 -5.1850 2.5325 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2568 1.8014 -1.9563 32 1 2.8829 1.0774 -1.9563 33 1 2.1757 3.8630 -0.9285 34 1 2.9880 3.5009 -2.4701 35 1 4.6332 4.1215 -0.7218 36 1 4.8543 2.4319 -1.2354 37 1 3.3169 3.3543 1.2351 38 1 4.9428 2.6292 1.2346 39 1 4.1194 0.1376 -0.9105 40 1 7.3079 -1.6166 1.6148 41 1 7.4826 -3.5796 -0.4082 42 1 8.5658 -2.2339 -0.8372 43 1 9.6932 -2.4413 1.3619 44 1 8.6096 -3.7868 1.7904 45 1 9.4586 -5.0856 -0.1442 46 1 10.5419 -3.7396 -0.5722 47 1 12.7034 -6.7161 -0.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340391698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:29 Heat of formation + Delta-G solvation = -144.495542 kcal Electronic energy + Delta-G solvation = -26017.852919 eV Core-core repulsion = 22199.700101 eV Total energy + Delta-G solvation = -3818.152818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96977 -39.67233 -38.21421 -36.90108 -35.63424 -34.02479 -33.23795 -31.21179 -30.76332 -30.01550 -27.20852 -26.82213 -24.82094 -23.14113 -22.70768 -22.42619 -20.79999 -20.39151 -19.47930 -18.49262 -17.11557 -16.77620 -16.37749 -16.10492 -15.90849 -15.84505 -15.28719 -15.07908 -14.87061 -14.49685 -14.43160 -14.09039 -13.88255 -13.44958 -13.41813 -12.83817 -12.70612 -12.51345 -12.28190 -12.11047 -11.86680 -11.76334 -11.58038 -11.56088 -11.10497 -11.05008 -10.87746 -10.86920 -10.73102 -10.61743 -9.90097 -9.87302 -9.72959 -9.37144 -9.32293 -9.12059 -8.92542 -8.35970 -6.00948 -4.03901 1.50653 2.40839 3.20407 3.31357 3.33793 3.38201 3.40550 3.74092 4.15245 4.25976 4.45362 4.47382 4.58529 4.64409 4.68331 4.72777 4.91516 4.93645 4.99787 5.09808 5.14561 5.28818 5.34845 5.39777 5.52600 5.54361 5.62899 5.63424 5.72831 5.73551 5.83747 5.92239 6.11579 6.12628 6.32576 6.57294 6.72692 6.74529 6.97854 7.01035 7.48214 7.63535 7.75677 7.81217 7.97532 8.12316 8.38871 9.02405 9.60203 11.10328 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.002105 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.453622 B =13296.895355 C =13475.369497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.081 3.919 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.130 4.130 9 C 0.150 3.850 10 H 0.098 0.902 11 N -0.687 5.687 12 C 0.511 3.489 13 O -0.524 6.524 14 C 0.500 3.500 15 O -0.526 6.526 16 N -0.692 5.692 17 C 0.114 3.886 18 C -0.122 4.122 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.413 0.587 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.488 20.353 -0.447 31.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.023 3.977 4 H 0.095 0.905 5 C -0.183 4.183 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.168 4.168 9 C 0.045 3.955 10 H 0.116 0.884 11 N -0.342 5.342 12 C 0.291 3.709 13 O -0.399 6.399 14 C 0.280 3.720 15 O -0.403 6.403 16 N -0.344 5.344 17 C -0.008 4.008 18 C -0.160 4.160 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.251 0.749 40 H 0.246 0.754 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.269 20.046 -0.576 31.483 hybrid contribution 0.485 -0.238 0.558 0.776 sum -23.784 19.808 -0.019 30.952 Atomic orbital electron populations 1.22821 0.80904 1.03046 0.99857 1.88007 1.19725 1.26908 1.94998 1.22425 0.93818 0.85443 0.96008 0.90496 1.22071 1.01963 0.97568 0.96725 1.21514 0.96738 0.96066 1.01132 1.21573 0.97374 1.01836 0.95417 1.21933 1.02294 0.94914 0.97705 1.21112 0.87241 0.89505 0.97633 0.88421 1.45701 1.29313 1.44170 1.14991 1.20311 0.82059 0.81534 0.86955 1.90745 1.71385 1.62487 1.15319 1.20030 0.82443 0.82387 0.87146 1.90753 1.71511 1.62728 1.15340 1.46059 1.29494 1.43823 1.15003 1.21831 0.91174 0.91379 0.96437 1.21924 0.96112 1.00191 0.97821 1.19029 0.93278 0.93262 0.95734 1.21169 1.13196 1.25395 0.96349 0.92625 1.25031 0.97805 0.96441 0.95204 1.69958 1.35414 1.32619 1.15339 0.86626 0.81338 0.78743 0.81102 1.20223 1.21295 1.20232 0.93974 0.94007 0.89441 0.91207 0.90811 0.91744 0.91270 0.91378 0.91400 0.90547 0.90324 0.74942 0.75351 0.91131 0.91140 0.92455 0.92436 0.96203 0.96209 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.44 10.21 -35.23 -0.36 -3.80 16 3 C 0.08 0.58 2.34 -26.73 -0.06 0.52 16 4 H 0.08 0.41 7.79 -51.93 -0.40 0.01 16 5 C -0.15 -0.91 5.37 -26.73 -0.14 -1.05 16 6 C -0.12 -0.63 5.92 -26.73 -0.16 -0.78 16 7 C -0.12 -0.83 5.77 -26.73 -0.15 -0.98 16 8 C -0.13 -0.95 5.60 -26.76 -0.15 -1.10 16 9 C 0.15 1.32 2.47 -67.96 -0.17 1.16 16 10 H 0.10 1.00 7.58 -51.93 -0.39 0.60 16 11 N -0.69 -7.56 4.09 -54.26 -0.22 -7.78 16 12 C 0.51 7.02 7.85 -11.59 -0.09 6.93 16 13 O -0.52 -7.99 16.14 5.49 0.09 -7.90 16 14 C 0.50 7.81 7.89 -11.58 -0.09 7.72 16 15 O -0.53 -9.29 16.48 5.50 0.09 -9.20 16 16 N -0.69 -10.76 5.55 -60.73 -0.34 -11.09 16 17 C 0.11 2.01 5.67 -4.04 -0.02 1.98 16 18 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 20 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 23 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 24 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 29 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.55 7.60 -51.93 -0.39 0.15 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 4.43 6.34 -40.82 -0.26 4.17 16 40 H 0.41 5.84 7.94 -40.82 -0.32 5.52 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -32.56 382.46 -7.86 -40.42 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.97 Total: 2.97 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.64 Total: 0.13 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.18 Total: -45.00 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.18 Total: -20.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.56 -7.86 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340391698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.073 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds