Wall clock time and date at job start Fri Apr 10 2020 18:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99972 * 2 1 4 4 H 1.09003 * 109.47048 * 30.00152 * 3 2 1 5 5 C 1.53004 * 109.47138 * 269.99865 * 3 2 1 6 6 C 1.52996 * 109.46993 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47332 * 59.99913 * 6 5 3 8 8 C 1.52996 * 109.47038 * 300.00174 * 7 6 5 9 9 C 1.52994 * 109.46856 * 149.99964 * 3 2 1 10 10 H 1.09002 * 109.47448 * 299.99829 * 9 3 2 11 11 N 1.46500 * 109.47443 * 60.00012 * 9 3 2 12 12 C 1.34773 * 120.00432 * 204.99571 * 11 9 3 13 13 O 1.21353 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.49454 * 120.00135 * 179.72278 * 12 11 9 15 15 O 1.21343 * 119.99752 * 0.28157 * 14 12 11 16 16 N 1.34777 * 120.00164 * 180.27489 * 14 12 11 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46671 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46661 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.46885 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00286 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00114 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99465 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00149 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47229 * 60.00369 * 24 22 20 26 26 H 1.48498 * 109.47080 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47153 * 299.99916 * 24 22 20 28 28 H 1.08997 * 109.46836 * 299.99829 * 1 2 3 29 29 H 1.09002 * 109.46768 * 60.00198 * 1 2 3 30 30 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46656 * 59.99912 * 5 3 2 32 32 H 1.08998 * 109.46712 * 300.00257 * 5 3 2 33 33 H 1.09003 * 109.47061 * 300.00206 * 6 5 3 34 34 H 1.08994 * 109.47099 * 180.02562 * 6 5 3 35 35 H 1.08994 * 109.47021 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46808 * 60.00138 * 7 6 5 37 37 H 1.09003 * 109.47292 * 299.99668 * 8 7 6 38 38 H 1.08998 * 109.46919 * 179.97438 * 8 7 6 39 39 H 0.97001 * 119.99454 * 25.00306 * 11 9 3 40 40 H 0.97000 * 119.99555 * 0.02562 * 16 14 12 41 41 H 1.08994 * 109.46952 * 300.00262 * 17 16 14 42 42 H 1.08992 * 109.46844 * 60.00609 * 17 16 14 43 43 H 1.08994 * 109.47336 * 299.99647 * 18 17 16 44 44 H 1.08992 * 109.47300 * 60.00508 * 18 17 16 45 45 H 1.09008 * 109.46807 * 299.99899 * 19 18 17 46 46 H 1.08998 * 109.47208 * 59.99706 * 19 18 17 47 47 H 0.96997 * 119.99506 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 2.8406 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7214 8 6 3.9818 2.6601 0.7211 9 6 3.3588 1.2632 0.7212 10 1 3.2111 0.9313 1.7489 11 7 4.2530 0.3306 0.0307 12 6 5.2613 -0.2592 0.7030 13 8 5.4282 -0.0181 1.8805 14 6 6.1696 -1.2154 -0.0001 15 8 6.0025 -1.4568 -1.1774 16 7 7.1745 -1.8094 0.6736 17 6 8.0653 -2.7463 -0.0157 18 6 9.1104 -3.2744 0.9690 19 6 10.0411 -4.2523 0.2490 20 6 11.0702 -4.7730 1.2190 21 1 11.0616 -4.4394 2.2461 22 6 12.0228 -5.6753 0.7951 23 7 12.0335 -6.0810 -0.4559 24 14 13.2988 -6.3201 1.9973 25 1 12.6164 -7.0181 3.1163 26 1 14.2020 -7.2693 1.2985 27 1 14.0928 -5.1850 2.5325 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2568 1.8014 -1.9563 32 1 2.8829 1.0774 -1.9563 33 1 2.1757 3.8630 -0.9285 34 1 2.9880 3.5009 -2.4701 35 1 4.6332 4.1215 -0.7218 36 1 4.8543 2.4319 -1.2354 37 1 3.3169 3.3543 1.2351 38 1 4.9428 2.6292 1.2346 39 1 4.1194 0.1376 -0.9105 40 1 7.3079 -1.6166 1.6148 41 1 7.4826 -3.5796 -0.4082 42 1 8.5658 -2.2339 -0.8372 43 1 9.6932 -2.4413 1.3619 44 1 8.6096 -3.7868 1.7904 45 1 9.4586 -5.0856 -0.1442 46 1 10.5419 -3.7396 -0.5722 47 1 12.7034 -6.7161 -0.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340391698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:28 Heat of formation + Delta-G solvation = -167.314700 kcal Electronic energy + Delta-G solvation = -26018.842431 eV Core-core repulsion = 22199.700101 eV Total energy + Delta-G solvation = -3819.142330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96578 -40.60254 -39.28543 -37.55956 -37.13469 -35.36635 -34.70263 -33.04102 -31.33782 -30.67917 -28.94644 -27.33889 -26.26058 -24.46927 -23.42091 -23.17119 -22.37642 -21.63340 -20.22402 -19.70176 -18.51122 -17.86274 -17.67839 -17.22334 -16.78314 -16.72539 -16.47313 -16.24702 -16.12306 -15.65521 -15.51921 -15.06863 -14.82117 -14.51507 -14.27501 -14.05545 -13.78920 -13.54865 -13.40760 -13.31303 -13.08827 -12.81701 -12.72885 -12.58258 -12.53583 -12.43774 -12.09681 -11.70133 -11.65078 -11.55599 -11.54098 -11.40446 -11.25250 -10.69768 -10.54221 -10.44735 -10.33295 -10.22951 -8.19273 -6.30336 0.31068 1.28812 1.42125 1.44899 1.52777 2.10822 2.41771 2.56741 2.75246 3.14402 3.40623 3.59061 3.71737 3.97464 4.07665 4.09091 4.16198 4.17280 4.21827 4.41863 4.47566 4.51700 4.52283 4.57288 4.62704 4.84868 4.86060 4.90805 4.91916 4.98160 5.00062 5.12858 5.14296 5.19149 5.22283 5.26584 5.35434 5.45011 5.51136 5.70286 5.84177 5.89041 6.22769 6.23532 6.31947 6.70055 6.86279 6.91031 7.38851 8.92507 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.002105 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.453622 B =13296.895355 C =13475.369497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.084 3.916 4 H 0.102 0.898 5 C -0.143 4.143 6 C -0.111 4.111 7 C -0.124 4.124 8 C -0.125 4.125 9 C 0.144 3.856 10 H 0.084 0.916 11 N -0.674 5.674 12 C 0.515 3.485 13 O -0.541 6.541 14 C 0.500 3.500 15 O -0.549 6.549 16 N -0.686 5.686 17 C 0.127 3.873 18 C -0.105 4.105 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.064 0.936 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.266 1.266 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.419 0.581 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.066 0.934 45 H -0.004 1.004 46 H -0.004 1.004 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.683 21.949 0.668 33.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.026 3.974 4 H 0.120 0.880 5 C -0.181 4.181 6 C -0.148 4.148 7 C -0.161 4.161 8 C -0.163 4.163 9 C 0.040 3.960 10 H 0.102 0.898 11 N -0.327 5.327 12 C 0.295 3.705 13 O -0.418 6.418 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.338 5.338 17 C 0.004 3.996 18 C -0.143 4.143 19 C -0.012 4.012 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.200 4.200 23 N -0.574 5.574 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.191 1.191 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.256 0.744 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.500 21.673 0.549 33.470 hybrid contribution 0.786 -0.717 0.167 1.077 sum -24.714 20.956 0.716 32.410 Atomic orbital electron populations 1.22969 0.79454 1.03534 1.01142 1.87965 1.21471 1.28129 1.95203 1.22488 0.92922 0.85412 0.96553 0.88008 1.22059 1.02312 0.97700 0.96023 1.21490 0.96024 0.95796 1.01528 1.21569 0.98030 1.01753 0.94787 1.21901 1.01709 0.94371 0.98319 1.21365 0.88016 0.89655 0.96954 0.89780 1.45766 1.28407 1.43508 1.15014 1.19913 0.82437 0.81531 0.86643 1.90739 1.72033 1.63293 1.15783 1.20393 0.82355 0.82288 0.86886 1.90740 1.72098 1.63518 1.16370 1.45875 1.29233 1.43394 1.15331 1.21479 0.90868 0.91505 0.95746 1.21638 0.95705 0.99245 0.97727 1.18930 0.93595 0.93504 0.95216 1.21647 1.13804 1.25510 0.97139 0.91756 1.26002 1.00201 0.96764 0.97047 1.70097 1.36456 1.33373 1.17424 0.85480 0.78447 0.78288 0.78708 1.19148 1.21046 1.19117 0.92703 0.92633 0.89509 0.89936 0.92515 0.89836 0.90728 0.90410 0.93386 0.88007 0.92310 0.74740 0.74359 0.91876 0.91706 0.91398 0.91497 0.98601 0.98523 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.41 -6.93 10.21 -148.98 -1.52 -8.45 16 3 C 0.08 1.04 2.34 30.59 0.07 1.12 16 4 H 0.10 0.77 7.79 -2.39 -0.02 0.75 16 5 C -0.14 -1.52 5.37 30.59 0.16 -1.35 16 6 C -0.11 -0.91 5.92 30.59 0.18 -0.73 16 7 C -0.12 -1.45 5.77 30.59 0.18 -1.27 16 8 C -0.12 -1.65 5.60 30.58 0.17 -1.48 16 9 C 0.14 2.40 2.47 44.97 0.11 2.52 16 10 H 0.08 1.66 7.58 -2.39 -0.02 1.65 16 11 N -0.67 -14.73 4.09 -443.94 -1.81 -16.54 16 12 C 0.51 14.16 7.85 87.27 0.69 14.84 16 13 O -0.54 -16.41 16.14 -3.26 -0.05 -16.46 16 14 C 0.50 15.68 7.89 87.27 0.69 16.37 16 15 O -0.55 -19.61 16.48 -3.23 -0.05 -19.66 16 16 N -0.69 -21.19 5.55 -464.43 -2.58 -23.76 16 17 C 0.13 4.51 5.67 86.38 0.49 5.00 16 18 C -0.11 -4.15 5.27 30.60 0.16 -3.99 16 19 C 0.03 1.31 4.97 29.85 0.15 1.46 16 20 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 21 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 22 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 23 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 24 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H 0.05 0.41 8.08 -2.39 -0.02 0.39 16 29 H 0.06 0.40 7.87 -2.39 -0.02 0.39 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 0.69 7.87 -2.39 -0.02 0.67 16 32 H 0.06 0.80 6.50 -2.39 -0.02 0.79 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.75 7.60 -2.39 -0.02 0.73 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.41 8.94 6.34 -92.71 -0.59 8.35 16 40 H 0.42 11.63 7.94 -92.71 -0.74 10.90 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -70.41 382.46 0.91 -69.50 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.36 Total: 21.94 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.97 Total: 3.94 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -4.11 Total: -97.06 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.63 Total: -44.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.41 0.91 -69.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340391698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.811 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds