Wall clock time and date at job start Fri Apr 10 2020 18:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99749 * 2 1 4 4 H 1.09003 * 109.46971 * 329.99736 * 3 2 1 5 5 C 1.52994 * 109.47283 * 89.99834 * 3 2 1 6 6 C 1.52998 * 109.47267 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47336 * 300.00543 * 6 5 3 8 8 C 1.52994 * 109.47386 * 59.99530 * 7 6 5 9 9 C 1.52999 * 109.47449 * 300.00168 * 8 7 6 10 10 H 1.09003 * 109.46903 * 300.00159 * 9 8 7 11 11 N 1.46493 * 109.47638 * 179.97438 * 9 8 7 12 12 C 1.34784 * 119.99864 * 84.99998 * 11 9 8 13 13 O 1.21355 * 119.99822 * 359.72859 * 12 11 9 14 14 C 1.49445 * 119.99977 * 179.72558 * 12 11 9 15 15 O 1.21355 * 120.00200 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99983 * 180.02562 * 14 12 11 17 17 C 1.46504 * 120.00240 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47046 * 179.97438 * 17 16 14 19 19 C 1.53009 * 109.46803 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46795 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99709 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99895 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47136 * 90.00173 * 24 22 20 26 26 H 1.48504 * 109.46915 * 210.00252 * 24 22 20 27 27 H 1.48503 * 109.47098 * 330.00107 * 24 22 20 28 28 H 1.09004 * 109.47608 * 60.00463 * 1 2 3 29 29 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47449 * 300.00042 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.00040 * 5 3 2 32 32 H 1.09003 * 109.47448 * 300.00129 * 5 3 2 33 33 H 1.08994 * 109.47217 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.46713 * 60.00070 * 6 5 3 35 35 H 1.09003 * 109.46833 * 299.99453 * 7 6 5 36 36 H 1.09003 * 109.47419 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47448 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47197 * 60.00146 * 8 7 6 39 39 H 0.97000 * 120.00740 * 264.72691 * 11 9 8 40 40 H 0.97005 * 119.99841 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.46642 * 300.00072 * 17 16 14 42 42 H 1.08994 * 109.47228 * 59.99735 * 17 16 14 43 43 H 1.08998 * 109.47018 * 299.99693 * 18 17 16 44 44 H 1.09002 * 109.47113 * 60.00115 * 18 17 16 45 45 H 1.09000 * 109.47054 * 300.00251 * 19 18 17 46 46 H 1.09002 * 109.46901 * 60.00341 * 19 18 17 47 47 H 0.96996 * 120.00083 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 2.8403 3.1690 1.4424 7 6 4.1890 3.1263 0.7213 8 6 3.9816 2.6603 -0.7211 9 6 3.3589 1.2628 -0.7212 10 1 4.0239 0.5687 -0.2072 11 7 3.1597 0.8169 -2.1023 12 6 4.1693 0.2260 -2.7719 13 8 5.2447 0.0679 -2.2323 14 6 3.9643 -0.2345 -4.1788 15 8 2.8890 -0.0760 -4.7185 16 7 4.9736 -0.8257 -4.8481 17 6 4.7729 -1.2766 -6.2275 18 6 6.0648 -1.9074 -6.7510 19 6 5.8549 -2.3789 -8.1914 20 6 7.1276 -2.9997 -8.7072 21 1 7.9988 -3.0530 -8.0712 22 6 7.1794 -3.5005 -9.9908 23 7 6.1183 -3.4361 -10.7651 24 14 8.7567 -4.2706 -10.6299 25 1 8.7551 -5.7247 -10.3285 26 1 8.8459 -4.0695 -12.0986 27 1 9.9229 -3.6297 -9.9708 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.8828 1.0776 1.9563 32 1 1.2567 1.8015 1.9563 33 1 2.9877 3.5011 2.4700 34 1 2.1754 3.8630 0.9284 35 1 4.8540 2.4322 1.2353 36 1 4.6326 4.1220 0.7209 37 1 4.9426 2.6295 -1.2348 38 1 3.3167 3.3544 -1.2351 39 1 2.3002 0.9432 -2.5337 40 1 5.8331 -0.9527 -4.4166 41 1 3.9707 -2.0141 -6.2555 42 1 4.5055 -0.4250 -6.8529 43 1 6.8667 -1.1696 -6.7230 44 1 6.3327 -2.7591 -6.1256 45 1 5.0531 -3.1168 -8.2190 46 1 5.5869 -1.5275 -8.8170 47 1 6.1546 -3.7887 -11.6679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340391699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:33 Heat of formation + Delta-G solvation = -147.866448 kcal Electronic energy + Delta-G solvation = -25757.563796 eV Core-core repulsion = 21939.264805 eV Total energy + Delta-G solvation = -3818.298991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85933 -39.67219 -38.26279 -36.83421 -35.70634 -34.48540 -33.28100 -31.22589 -30.65736 -29.84796 -27.22508 -26.78551 -24.85420 -23.18039 -22.76891 -21.90952 -20.75216 -20.70077 -19.90803 -18.41721 -17.14049 -16.98130 -16.34110 -16.22656 -15.91157 -15.59553 -15.39806 -14.97075 -14.71801 -14.44315 -14.36597 -14.12477 -13.96667 -13.67207 -13.45533 -13.20756 -12.81925 -12.30072 -12.18272 -11.88007 -11.79699 -11.77448 -11.65614 -11.51682 -11.29588 -11.15099 -10.90501 -10.81640 -10.74453 -10.59646 -10.05799 -9.88792 -9.72239 -9.40864 -9.33061 -9.11858 -8.94888 -8.37113 -6.01859 -4.04766 1.47247 2.35832 3.20427 3.28183 3.31850 3.38102 3.41321 3.65542 4.13314 4.36432 4.44801 4.45371 4.55461 4.60830 4.68288 4.70835 4.90152 4.94630 4.96441 5.00112 5.24498 5.33546 5.34075 5.40358 5.46780 5.54299 5.60350 5.61670 5.67412 5.71217 5.79715 5.89091 6.08894 6.10004 6.30207 6.55928 6.71688 6.74386 6.96220 6.96824 7.44738 7.62781 7.74565 7.77532 7.96632 8.09263 8.37966 9.01748 9.59489 11.09416 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002034 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.373154 B =13763.593107 C =14303.154091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.082 3.918 4 H 0.068 0.932 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.130 4.130 9 C 0.149 3.851 10 H 0.100 0.900 11 N -0.694 5.694 12 C 0.512 3.488 13 O -0.521 6.521 14 C 0.501 3.499 15 O -0.527 6.527 16 N -0.691 5.691 17 C 0.114 3.886 18 C -0.123 4.123 19 C 0.024 3.976 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.411 0.589 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 14.180 26.585 31.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.176 4.176 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.168 4.168 9 C 0.044 3.956 10 H 0.118 0.882 11 N -0.346 5.346 12 C 0.293 3.707 13 O -0.396 6.396 14 C 0.280 3.720 15 O -0.404 6.404 16 N -0.343 5.343 17 C -0.008 4.008 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.722 3.278 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.247 0.753 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.605 13.949 26.376 31.666 hybrid contribution 0.524 -0.277 -0.466 0.754 sum -10.082 13.672 25.910 30.983 Atomic orbital electron populations 1.22832 0.80791 1.03123 0.99948 1.87991 1.19818 1.26887 1.95006 1.22419 0.93977 0.85316 0.95943 0.91425 1.22002 1.01993 0.97499 0.96086 1.21547 0.96827 0.96254 1.01095 1.21534 0.97359 1.01937 0.94867 1.21948 1.02054 0.95053 0.97767 1.21169 0.96276 0.96871 0.81247 0.88207 1.45660 1.15544 1.59436 1.14005 1.20309 0.84558 0.78455 0.87406 1.90753 1.25056 1.54669 1.69125 1.20017 0.85158 0.80057 0.86741 1.90753 1.25126 1.55412 1.69127 1.46066 1.14905 1.57636 1.15713 1.21838 1.00592 0.99444 0.78948 1.21929 0.94019 0.99415 1.00706 1.19035 0.97464 0.96536 0.88304 1.21203 0.97829 1.38741 0.98264 0.92563 1.25032 0.96388 0.96096 0.96994 1.69962 1.28659 1.46343 1.08348 0.86568 0.83669 0.79619 0.77991 1.20649 1.21223 1.19866 0.93792 0.89384 0.94062 0.90557 0.91200 0.91214 0.91710 0.91267 0.91140 0.90338 0.91302 0.75297 0.75318 0.91114 0.91128 0.92429 0.92423 0.96198 0.96200 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.49 10.21 -35.23 -0.36 -3.85 16 3 C 0.08 0.60 2.12 -26.73 -0.06 0.54 16 4 H 0.07 0.42 7.79 -51.93 -0.40 0.01 16 5 C -0.14 -0.80 5.54 -26.73 -0.15 -0.95 16 6 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 7 C -0.12 -0.69 5.92 -26.74 -0.16 -0.85 16 8 C -0.13 -0.98 5.49 -26.73 -0.15 -1.13 16 9 C 0.15 1.35 2.14 -67.93 -0.15 1.20 16 10 H 0.10 1.09 7.58 -51.93 -0.39 0.69 16 11 N -0.69 -7.54 4.94 -54.24 -0.27 -7.81 16 12 C 0.51 7.00 7.85 -11.58 -0.09 6.91 16 13 O -0.52 -7.97 16.14 5.49 0.09 -7.88 16 14 C 0.50 7.72 7.89 -11.59 -0.09 7.63 16 15 O -0.53 -9.16 16.48 5.49 0.09 -9.06 16 16 N -0.69 -10.66 5.55 -60.73 -0.34 -10.99 16 17 C 0.11 1.99 5.67 -4.04 -0.02 1.97 16 18 C -0.12 -2.41 5.27 -26.73 -0.14 -2.56 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 24 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.20 7.87 -51.93 -0.41 -0.21 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.41 4.13 8.07 -40.82 -0.33 3.80 16 40 H 0.41 5.80 7.94 -40.82 -0.32 5.48 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -32.53 386.90 -8.00 -40.53 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.15 Total: 2.32 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.62 Total: 0.39 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.13 Total: -44.85 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.18 Total: -20.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.53 -8.00 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340391699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.333 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds