Wall clock time and date at job start Fri Apr 10 2020 18:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99749 * 2 1 4 4 H 1.09003 * 109.46971 * 329.99736 * 3 2 1 5 5 C 1.52994 * 109.47283 * 89.99834 * 3 2 1 6 6 C 1.52998 * 109.47267 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47336 * 300.00543 * 6 5 3 8 8 C 1.52994 * 109.47386 * 59.99530 * 7 6 5 9 9 C 1.52999 * 109.47449 * 300.00168 * 8 7 6 10 10 H 1.09003 * 109.46903 * 300.00159 * 9 8 7 11 11 N 1.46493 * 109.47638 * 179.97438 * 9 8 7 12 12 C 1.34784 * 119.99864 * 84.99998 * 11 9 8 13 13 O 1.21355 * 119.99822 * 359.72859 * 12 11 9 14 14 C 1.49445 * 119.99977 * 179.72558 * 12 11 9 15 15 O 1.21355 * 120.00200 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99983 * 180.02562 * 14 12 11 17 17 C 1.46504 * 120.00240 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47046 * 179.97438 * 17 16 14 19 19 C 1.53009 * 109.46803 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46795 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99709 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00095 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99895 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47136 * 90.00173 * 24 22 20 26 26 H 1.48504 * 109.46915 * 210.00252 * 24 22 20 27 27 H 1.48503 * 109.47098 * 330.00107 * 24 22 20 28 28 H 1.09004 * 109.47608 * 60.00463 * 1 2 3 29 29 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47449 * 300.00042 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.00040 * 5 3 2 32 32 H 1.09003 * 109.47448 * 300.00129 * 5 3 2 33 33 H 1.08994 * 109.47217 * 179.97438 * 6 5 3 34 34 H 1.09003 * 109.46713 * 60.00070 * 6 5 3 35 35 H 1.09003 * 109.46833 * 299.99453 * 7 6 5 36 36 H 1.09003 * 109.47419 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.47448 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.47197 * 60.00146 * 8 7 6 39 39 H 0.97000 * 120.00740 * 264.72691 * 11 9 8 40 40 H 0.97005 * 119.99841 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.46642 * 300.00072 * 17 16 14 42 42 H 1.08994 * 109.47228 * 59.99735 * 17 16 14 43 43 H 1.08998 * 109.47018 * 299.99693 * 18 17 16 44 44 H 1.09002 * 109.47113 * 60.00115 * 18 17 16 45 45 H 1.09000 * 109.47054 * 300.00251 * 19 18 17 46 46 H 1.09002 * 109.46901 * 60.00341 * 19 18 17 47 47 H 0.96996 * 120.00083 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 2.8403 3.1690 1.4424 7 6 4.1890 3.1263 0.7213 8 6 3.9816 2.6603 -0.7211 9 6 3.3589 1.2628 -0.7212 10 1 4.0239 0.5687 -0.2072 11 7 3.1597 0.8169 -2.1023 12 6 4.1693 0.2260 -2.7719 13 8 5.2447 0.0679 -2.2323 14 6 3.9643 -0.2345 -4.1788 15 8 2.8890 -0.0760 -4.7185 16 7 4.9736 -0.8257 -4.8481 17 6 4.7729 -1.2766 -6.2275 18 6 6.0648 -1.9074 -6.7510 19 6 5.8549 -2.3789 -8.1914 20 6 7.1276 -2.9997 -8.7072 21 1 7.9988 -3.0530 -8.0712 22 6 7.1794 -3.5005 -9.9908 23 7 6.1183 -3.4361 -10.7651 24 14 8.7567 -4.2706 -10.6299 25 1 8.7551 -5.7247 -10.3285 26 1 8.8459 -4.0695 -12.0986 27 1 9.9229 -3.6297 -9.9708 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.8828 1.0776 1.9563 32 1 1.2567 1.8015 1.9563 33 1 2.9877 3.5011 2.4700 34 1 2.1754 3.8630 0.9284 35 1 4.8540 2.4322 1.2353 36 1 4.6326 4.1220 0.7209 37 1 4.9426 2.6295 -1.2348 38 1 3.3167 3.3544 -1.2351 39 1 2.3002 0.9432 -2.5337 40 1 5.8331 -0.9527 -4.4166 41 1 3.9707 -2.0141 -6.2555 42 1 4.5055 -0.4250 -6.8529 43 1 6.8667 -1.1696 -6.7230 44 1 6.3327 -2.7591 -6.1256 45 1 5.0531 -3.1168 -8.2190 46 1 5.5869 -1.5275 -8.8170 47 1 6.1546 -3.7887 -11.6679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340391699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:32 Heat of formation + Delta-G solvation = -171.001933 kcal Electronic energy + Delta-G solvation = -25758.567026 eV Core-core repulsion = 21939.264805 eV Total energy + Delta-G solvation = -3819.302221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89954 -40.54003 -39.33962 -37.46466 -37.16449 -35.57904 -35.02531 -33.04648 -31.20045 -30.54733 -28.93378 -27.35422 -26.23606 -24.53250 -23.42592 -22.83688 -22.37543 -21.50013 -20.91068 -19.55503 -18.53770 -18.02437 -17.68770 -17.20911 -17.05680 -16.62452 -16.35414 -16.14016 -16.11982 -15.73907 -15.21594 -15.00856 -14.78560 -14.55096 -14.33483 -14.25497 -13.80815 -13.77337 -13.55552 -13.42603 -12.91709 -12.76207 -12.67188 -12.55592 -12.40623 -12.28686 -12.09235 -11.80584 -11.70642 -11.62446 -11.55785 -11.35469 -11.24011 -10.81399 -10.54984 -10.51673 -10.33121 -10.23557 -8.19582 -6.30460 0.28962 1.25036 1.42036 1.42944 1.54084 2.08872 2.41362 2.56667 2.67161 3.14194 3.36856 3.56471 3.84948 3.94541 4.07475 4.09434 4.14240 4.17360 4.19248 4.34945 4.41308 4.48316 4.51765 4.55468 4.77047 4.83941 4.84946 4.87206 4.90682 4.90859 5.08528 5.11602 5.14264 5.18741 5.21749 5.27822 5.29570 5.45745 5.51293 5.70324 5.84167 5.86691 6.21226 6.22672 6.30407 6.68074 6.86306 6.88940 7.38762 8.92305 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002034 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.373154 B =13763.593107 C =14303.154091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.083 3.917 4 H 0.084 0.916 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.125 4.125 9 C 0.146 3.854 10 H 0.079 0.921 11 N -0.680 5.680 12 C 0.516 3.484 13 O -0.540 6.540 14 C 0.502 3.498 15 O -0.547 6.547 16 N -0.686 5.686 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.025 3.975 20 C -0.542 4.542 21 H 0.064 0.936 22 C -0.003 4.003 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.262 1.262 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.416 0.584 40 H 0.419 0.581 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.066 0.934 45 H -0.004 1.004 46 H -0.003 1.003 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 15.134 28.188 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.025 3.975 4 H 0.102 0.898 5 C -0.172 4.172 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.164 4.164 9 C 0.042 3.958 10 H 0.097 0.903 11 N -0.332 5.332 12 C 0.296 3.704 13 O -0.417 6.417 14 C 0.282 3.718 15 O -0.426 6.426 16 N -0.338 5.338 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.013 4.013 20 C -0.580 4.580 21 H 0.082 0.918 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.791 3.209 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.186 1.186 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.400 14.921 28.020 33.405 hybrid contribution 0.386 -0.562 -0.939 1.161 sum -10.014 14.359 27.081 32.246 Atomic orbital electron populations 1.22973 0.79492 1.03614 1.01095 1.87953 1.21382 1.28041 1.95228 1.22488 0.92959 0.85136 0.96882 0.89783 1.21986 1.02556 0.97827 0.94825 1.21534 0.96075 0.95739 1.01844 1.21534 0.98168 1.02239 0.93527 1.21910 1.01088 0.94260 0.99107 1.21362 0.97414 0.97164 0.79861 0.90322 1.45703 1.14954 1.57924 1.14580 1.19945 0.84924 0.78906 0.86604 1.90749 1.25842 1.55907 1.69227 1.20327 0.84608 0.79417 0.87413 1.90741 1.25874 1.56183 1.69774 1.45885 1.15490 1.57588 1.14875 1.21485 0.99108 0.98943 0.80038 1.21644 0.95366 1.00035 0.97333 1.18936 0.95925 0.94974 0.91442 1.21673 0.98870 1.38699 0.98749 0.91788 1.25995 0.99978 0.96668 0.97398 1.70096 1.30991 1.47435 1.08782 0.85431 0.79433 0.78793 0.77285 1.19869 1.20917 1.18645 0.93150 0.89359 0.92360 0.91635 0.89883 0.89928 0.90575 0.92001 0.89987 0.92306 0.90063 0.74678 0.74370 0.91797 0.91629 0.91413 0.91523 0.98554 0.98473 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.41 -7.08 10.21 -148.98 -1.52 -8.60 16 3 C 0.08 1.10 2.12 30.59 0.06 1.16 16 4 H 0.08 0.83 7.79 -2.39 -0.02 0.81 16 5 C -0.13 -1.29 5.54 30.59 0.17 -1.12 16 6 C -0.11 -0.80 5.92 30.59 0.18 -0.62 16 7 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 8 C -0.13 -1.76 5.49 30.59 0.17 -1.59 16 9 C 0.15 2.54 2.14 44.99 0.10 2.64 16 10 H 0.08 1.74 7.58 -2.39 -0.02 1.72 16 11 N -0.68 -14.40 4.94 -443.86 -2.19 -16.59 16 12 C 0.52 13.98 7.85 87.27 0.69 14.67 16 13 O -0.54 -16.49 16.14 -3.26 -0.05 -16.54 16 14 C 0.50 15.33 7.89 87.27 0.69 16.02 16 15 O -0.55 -18.89 16.48 -3.26 -0.05 -18.94 16 16 N -0.69 -20.83 5.55 -464.41 -2.58 -23.41 16 17 C 0.13 4.45 5.67 86.38 0.49 4.94 16 18 C -0.11 -4.14 5.27 30.60 0.16 -3.98 16 19 C 0.02 1.29 4.97 29.85 0.15 1.44 16 20 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 21 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 22 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 23 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 24 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 28 H 0.05 0.49 8.09 -2.39 -0.02 0.47 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.45 7.87 -2.38 -0.02 0.43 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.61 7.87 -2.39 -0.02 0.59 16 33 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.42 8.01 8.07 -92.71 -0.75 7.26 16 40 H 0.42 11.49 7.94 -92.70 -0.74 10.75 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -69.96 386.90 0.35 -69.61 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.52 Total: 20.58 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.96 Total: 4.20 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -4.48 Total: -96.48 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.63 Total: -44.08 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.96 0.35 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340391699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.395 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds