Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46852 * 111.00567 * 2 1 4 4 C 1.53033 * 109.52664 * 185.83731 * 3 2 1 5 5 C 1.53120 * 109.27660 * 300.81802 * 4 3 2 6 6 C 1.52993 * 109.52581 * 297.68356 * 5 4 3 7 7 C 1.52999 * 109.52248 * 177.55537 * 5 4 3 8 8 N 1.46500 * 109.47528 * 180.12726 * 7 5 4 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99894 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.72742 * 9 8 7 12 12 C 1.46504 * 119.99854 * 180.27545 * 11 9 8 13 13 C 1.50701 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00457 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47233 * 59.99986 * 20 18 16 22 22 H 1.48504 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47194 * 299.99814 * 20 18 16 24 24 C 1.53122 * 109.21231 * 57.62601 * 5 4 3 25 25 C 1.46854 * 110.99908 * 124.20724 * 2 1 3 26 26 H 1.09005 * 109.46443 * 59.99896 * 1 2 3 27 27 H 1.08997 * 109.47677 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47156 * 300.01147 * 1 2 3 29 29 H 1.09000 * 109.46380 * 65.81514 * 3 2 1 30 30 H 1.09000 * 109.44831 * 305.84907 * 3 2 1 31 31 H 1.08995 * 109.50369 * 180.88031 * 4 3 2 32 32 H 1.09001 * 109.50509 * 60.75905 * 4 3 2 33 33 H 1.08998 * 109.47247 * 299.87554 * 6 5 4 34 34 H 1.09006 * 109.46787 * 59.87217 * 6 5 4 35 35 H 1.08998 * 109.47377 * 179.87372 * 6 5 4 36 36 H 1.09009 * 109.47054 * 60.13021 * 7 5 4 37 37 H 1.08998 * 109.47782 * 300.13482 * 7 5 4 38 38 H 0.97000 * 119.99456 * 0.02562 * 8 7 5 39 39 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 40 40 H 1.08998 * 109.46968 * 299.99782 * 12 11 9 41 41 H 1.08997 * 109.47198 * 59.99605 * 12 11 9 42 42 H 0.97003 * 119.99587 * 0.02562 * 15 13 12 43 43 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.50443 * 62.31357 * 24 5 4 45 45 H 1.09003 * 109.50119 * 182.43552 * 24 5 4 46 46 H 1.09003 * 109.45909 * 294.17836 * 25 2 1 47 47 H 1.09005 * 109.45831 * 54.15152 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0145 6 6 3.7972 1.2375 2.3361 7 6 5.6360 0.4447 0.8407 8 7 6.2092 -0.3207 1.9506 9 6 7.5391 -0.5314 2.0081 10 8 8.2633 -0.0865 1.1385 11 7 8.0669 -1.2309 3.0321 12 6 9.5133 -1.4547 3.0977 13 6 9.8420 -2.2571 4.3303 14 8 8.9552 -2.6079 5.0799 15 7 11.1211 -2.5857 4.5992 16 6 11.4200 -3.3162 5.7202 17 1 10.6306 -3.6278 6.3881 18 6 12.7388 -3.6545 5.9977 19 7 13.6995 -3.2749 5.1853 20 14 13.1462 -4.6491 7.5255 21 1 12.4451 -5.9569 7.4664 22 1 14.6122 -4.8766 7.5918 23 1 12.7051 -3.9052 8.7327 24 6 3.5182 -0.8716 1.0226 25 6 1.9952 -0.7708 1.1338 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.7325 1.8609 0.9375 30 1 1.5635 1.9255 -0.8331 31 1 3.9100 2.3511 -0.1309 32 1 3.7815 0.8566 -1.0905 33 1 4.2231 2.2408 2.3285 34 1 2.7160 1.3027 2.4590 35 1 4.2231 0.6682 3.1622 36 1 6.0625 1.4479 0.8328 37 1 5.8643 -0.0544 -0.1010 38 1 5.6314 -0.6759 2.6440 39 1 7.4892 -1.5860 3.7256 40 1 9.8371 -2.0004 2.2115 41 1 10.0279 -0.4948 3.1416 42 1 11.8301 -2.3054 3.9995 43 1 14.6200 -3.5114 5.3789 44 1 3.7814 -1.3847 0.0976 45 1 3.9101 -1.4294 1.8731 46 1 1.7323 -0.2708 2.0661 47 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358273369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -72.784766 kcal Electronic energy + Delta-G solvation = -25947.732204 eV Core-core repulsion = 22164.981750 eV Total energy + Delta-G solvation = -3782.750454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48560 -39.45769 -38.15912 -36.15701 -34.37847 -33.62184 -33.25087 -31.35705 -31.25349 -28.98457 -27.89130 -26.74464 -25.02901 -24.23465 -23.57140 -21.81460 -20.60085 -19.55673 -18.75338 -18.36893 -17.94868 -16.38077 -15.93377 -15.65372 -15.52662 -15.46969 -15.14125 -14.85504 -14.59027 -14.50571 -14.20803 -14.03925 -13.77576 -13.60012 -13.38422 -12.81693 -12.66911 -12.43295 -12.34044 -12.14897 -11.95519 -11.90207 -11.78221 -11.61647 -11.43395 -11.09444 -10.88101 -10.69870 -10.55648 -10.49894 -10.30368 -9.99106 -9.61190 -9.09939 -8.66087 -8.60558 -8.54696 -8.08355 -6.49762 -3.91869 2.87733 3.14673 3.22325 3.26349 3.45698 3.55034 3.77309 4.10223 4.29169 4.30849 4.42152 4.53116 4.78486 4.84015 4.90933 4.92929 4.98506 5.04325 5.13822 5.18837 5.22796 5.32239 5.34720 5.47501 5.50479 5.51662 5.56927 5.66984 5.72415 5.79191 5.86255 5.92941 5.98364 6.03906 6.10526 6.10871 6.56072 6.68626 6.70465 6.79474 7.13847 7.47168 7.93873 8.28061 8.47079 8.84820 9.06112 9.41337 9.89366 10.67063 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034381 B = 0.002066 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.204935 B =13548.523945 C =14050.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.103 4.103 5 C -0.074 4.074 6 C -0.146 4.146 7 C 0.153 3.847 8 N -0.747 5.747 9 C 0.704 3.296 10 O -0.599 6.599 11 N -0.725 5.725 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.107 4.107 25 C 0.054 3.946 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.395 0.605 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.275 0.725 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 8.796 -9.865 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.204 4.204 7 C 0.028 3.972 8 N -0.404 5.404 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.383 5.383 12 C 0.001 3.999 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.435 4.435 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.145 4.145 25 C -0.074 4.074 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.229 0.771 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.500 8.701 -10.576 26.340 hybrid contribution -0.072 -0.272 1.779 1.801 sum -22.572 8.429 -8.797 25.650 Atomic orbital electron populations 1.22348 0.87357 1.02092 1.00537 1.61921 1.07433 1.13844 1.43579 1.22114 0.95446 0.89113 1.00572 1.21566 0.94108 1.00197 0.98292 1.20858 0.94138 0.96163 0.96273 1.21984 1.01413 1.00714 0.96248 1.21158 0.90731 0.96048 0.89243 1.45083 1.06029 1.60204 1.29095 1.15862 0.82051 0.79384 0.82365 1.90905 1.59619 1.56525 1.40721 1.44771 1.08602 1.58102 1.26804 1.20769 0.80428 1.00557 0.98195 1.19780 0.84127 0.86300 0.88346 1.90486 1.46593 1.59892 1.51567 1.41783 1.05968 1.47017 1.23638 1.19672 0.93387 1.29259 1.01152 0.87762 1.25326 0.95209 0.97988 0.99227 1.69606 1.00881 1.45681 1.37313 0.85871 0.77207 0.79885 0.80972 1.19802 1.20866 1.19809 1.21660 0.93969 0.95836 1.03017 1.22145 0.95638 0.98170 0.91438 0.91393 0.91366 0.95815 0.94535 0.90762 0.90996 0.90552 0.92208 0.92431 0.92353 0.91675 0.91548 0.77062 0.75708 0.90043 0.90073 0.77002 0.91548 0.90598 0.91238 0.94534 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.06 0.58 0.72 16 2 N -0.54 -4.04 4.91 -242.95 -1.19 -5.24 16 3 C 0.06 0.37 5.22 -3.83 -0.02 0.35 16 4 C -0.10 -0.73 4.88 -26.65 -0.13 -0.86 16 5 C -0.07 -0.57 0.53 -154.39 -0.08 -0.65 16 6 C -0.15 -1.07 7.73 37.15 0.29 -0.78 16 7 C 0.15 1.59 4.57 -4.04 -0.02 1.57 16 8 N -0.75 -8.93 4.98 -65.22 -0.33 -9.25 16 9 C 0.70 11.56 8.57 -86.92 -0.74 10.82 16 10 O -0.60 -11.92 16.34 5.28 0.09 -11.84 16 11 N -0.73 -12.35 5.53 -66.41 -0.37 -12.72 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 13 C 0.43 9.91 7.85 -10.99 -0.09 9.83 16 14 O -0.60 -15.35 15.24 5.54 0.08 -15.26 16 15 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 16 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 20 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.11 -0.83 4.68 -26.65 -0.12 -0.96 16 25 C 0.05 0.39 5.21 -3.83 -0.02 0.37 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.04 0.24 6.51 -51.93 -0.34 -0.09 16 30 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.40 4.93 -51.93 -0.26 0.14 16 35 H 0.06 0.44 6.87 -51.93 -0.36 0.09 16 36 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.39 3.92 6.21 -40.82 -0.25 3.66 16 39 H 0.41 6.68 7.45 -40.82 -0.30 6.38 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.53 6.95 -51.93 -0.36 0.17 16 46 H 0.04 0.26 6.52 -51.93 -0.34 -0.08 16 47 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -31.80 370.90 -8.65 -40.44 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -7.53 Total: 14.81 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: -0.63 Total: 14.92 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.22 Total: -64.24 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: 0.17 Total: -27.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.80 -8.65 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.342 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds