Wall clock time and date at job start Fri Apr 10 2020 18:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46852 * 111.00567 * 2 1 4 4 C 1.53033 * 109.52664 * 185.83731 * 3 2 1 5 5 C 1.53120 * 109.27660 * 300.81802 * 4 3 2 6 6 C 1.52993 * 109.52581 * 297.68356 * 5 4 3 7 7 C 1.52999 * 109.52248 * 177.55537 * 5 4 3 8 8 N 1.46500 * 109.47528 * 180.12726 * 7 5 4 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99894 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.72742 * 9 8 7 12 12 C 1.46504 * 119.99854 * 180.27545 * 11 9 8 13 13 C 1.50701 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00457 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47233 * 59.99986 * 20 18 16 22 22 H 1.48504 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47194 * 299.99814 * 20 18 16 24 24 C 1.53122 * 109.21231 * 57.62601 * 5 4 3 25 25 C 1.46854 * 110.99908 * 124.20724 * 2 1 3 26 26 H 1.09005 * 109.46443 * 59.99896 * 1 2 3 27 27 H 1.08997 * 109.47677 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47156 * 300.01147 * 1 2 3 29 29 H 1.09000 * 109.46380 * 65.81514 * 3 2 1 30 30 H 1.09000 * 109.44831 * 305.84907 * 3 2 1 31 31 H 1.08995 * 109.50369 * 180.88031 * 4 3 2 32 32 H 1.09001 * 109.50509 * 60.75905 * 4 3 2 33 33 H 1.08998 * 109.47247 * 299.87554 * 6 5 4 34 34 H 1.09006 * 109.46787 * 59.87217 * 6 5 4 35 35 H 1.08998 * 109.47377 * 179.87372 * 6 5 4 36 36 H 1.09009 * 109.47054 * 60.13021 * 7 5 4 37 37 H 1.08998 * 109.47782 * 300.13482 * 7 5 4 38 38 H 0.97000 * 119.99456 * 0.02562 * 8 7 5 39 39 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 40 40 H 1.08998 * 109.46968 * 299.99782 * 12 11 9 41 41 H 1.08997 * 109.47198 * 59.99605 * 12 11 9 42 42 H 0.97003 * 119.99587 * 0.02562 * 15 13 12 43 43 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.50443 * 62.31357 * 24 5 4 45 45 H 1.09003 * 109.50119 * 182.43552 * 24 5 4 46 46 H 1.09003 * 109.45909 * 294.17836 * 25 2 1 47 47 H 1.09005 * 109.45831 * 54.15152 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5369 1.0145 6 6 3.7972 1.2375 2.3361 7 6 5.6360 0.4447 0.8407 8 7 6.2092 -0.3207 1.9506 9 6 7.5391 -0.5314 2.0081 10 8 8.2633 -0.0865 1.1385 11 7 8.0669 -1.2309 3.0321 12 6 9.5133 -1.4547 3.0977 13 6 9.8420 -2.2571 4.3303 14 8 8.9552 -2.6079 5.0799 15 7 11.1211 -2.5857 4.5992 16 6 11.4200 -3.3162 5.7202 17 1 10.6306 -3.6278 6.3881 18 6 12.7388 -3.6545 5.9977 19 7 13.6995 -3.2749 5.1853 20 14 13.1462 -4.6491 7.5255 21 1 12.4451 -5.9569 7.4664 22 1 14.6122 -4.8766 7.5918 23 1 12.7051 -3.9052 8.7327 24 6 3.5182 -0.8716 1.0226 25 6 1.9952 -0.7708 1.1338 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.7325 1.8609 0.9375 30 1 1.5635 1.9255 -0.8331 31 1 3.9100 2.3511 -0.1309 32 1 3.7815 0.8566 -1.0905 33 1 4.2231 2.2408 2.3285 34 1 2.7160 1.3027 2.4590 35 1 4.2231 0.6682 3.1622 36 1 6.0625 1.4479 0.8328 37 1 5.8643 -0.0544 -0.1010 38 1 5.6314 -0.6759 2.6440 39 1 7.4892 -1.5860 3.7256 40 1 9.8371 -2.0004 2.2115 41 1 10.0279 -0.4948 3.1416 42 1 11.8301 -2.3054 3.9995 43 1 14.6200 -3.5114 5.3789 44 1 3.7814 -1.3847 0.0976 45 1 3.9101 -1.4294 1.8731 46 1 1.7323 -0.2708 2.0661 47 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358273369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:35 Heat of formation + Delta-G solvation = -97.288217 kcal Electronic energy + Delta-G solvation = -25948.794753 eV Core-core repulsion = 22164.981750 eV Total energy + Delta-G solvation = -3783.813003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44689 -40.60081 -39.88041 -36.97427 -36.20807 -35.24419 -34.23045 -33.34902 -31.83520 -29.87697 -29.01290 -27.75148 -26.37660 -25.39943 -24.19670 -22.52130 -21.83709 -21.34820 -20.11546 -19.71568 -19.18312 -17.52822 -17.42086 -16.96127 -16.61489 -16.43914 -16.05299 -15.99312 -15.95508 -15.62245 -15.38273 -15.31209 -15.06152 -14.58356 -14.40751 -13.93157 -13.77927 -13.52841 -13.35097 -13.26074 -12.99821 -12.90201 -12.87560 -12.53285 -12.46072 -12.39885 -12.13126 -12.01602 -11.55268 -11.54413 -11.47637 -11.26989 -11.17274 -10.54477 -10.40699 -10.09294 -9.78146 -9.18924 -8.49799 -6.00155 1.38924 1.43037 1.53495 1.64531 1.91048 2.14382 2.29593 3.03218 3.06715 3.17295 3.35314 3.61160 3.70438 3.81568 4.20264 4.22560 4.24146 4.35997 4.43044 4.44483 4.47115 4.48151 4.60457 4.68586 4.72139 4.78531 4.78698 4.82775 4.95877 5.04661 5.06178 5.06936 5.12310 5.26395 5.32052 5.33083 5.39551 5.48772 5.52177 5.92232 5.97009 6.16930 6.18355 6.49160 7.04162 7.04318 7.43944 7.55550 7.95497 8.66828 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034381 B = 0.002066 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.204935 B =13548.523945 C =14050.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.057 3.943 4 C -0.101 4.101 5 C -0.063 4.063 6 C -0.143 4.143 7 C 0.153 3.847 8 N -0.728 5.728 9 C 0.703 3.297 10 O -0.633 6.633 11 N -0.725 5.725 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.105 4.105 25 C 0.056 3.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.410 0.590 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.057 9.057 -9.623 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.070 4.070 4 C -0.140 4.140 5 C -0.064 4.064 6 C -0.201 4.201 7 C 0.029 3.971 8 N -0.385 5.385 9 C 0.403 3.597 10 O -0.515 6.515 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.143 4.143 25 C -0.071 4.071 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.244 0.756 39 H 0.247 0.753 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.606 8.973 -10.341 27.289 hybrid contribution 0.184 -0.323 1.642 1.684 sum -23.422 8.650 -8.699 26.440 Atomic orbital electron populations 1.22373 0.86469 1.02450 1.01000 1.61932 1.08365 1.14231 1.43700 1.22115 0.94901 0.88946 1.01080 1.21557 0.94581 1.00398 0.97441 1.20768 0.91987 0.96523 0.97082 1.21959 1.01970 1.00535 0.95597 1.21266 0.92466 0.95199 0.88151 1.44988 1.04568 1.59336 1.29599 1.15966 0.83104 0.78994 0.81627 1.90883 1.60836 1.57921 1.41885 1.44682 1.07829 1.58475 1.27248 1.20570 0.81809 1.00222 0.96061 1.20414 0.83226 0.85366 0.88906 1.90464 1.47194 1.60714 1.52819 1.41833 1.06717 1.47444 1.23485 1.19702 0.93663 1.31085 1.02221 0.89521 1.26145 0.94624 0.98506 1.01963 1.69676 1.01251 1.46120 1.38547 0.84918 0.77388 0.78303 0.77303 1.19489 1.19677 1.19475 1.21634 0.94663 0.95605 1.02439 1.22108 0.94964 0.98424 0.91639 0.90776 0.91118 0.95476 0.94186 0.89994 0.90161 0.91322 0.92196 0.91587 0.92560 0.92207 0.92575 0.75610 0.75282 0.89146 0.89127 0.76702 0.91081 0.91800 0.91101 0.94151 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.59 127.69 1.22 1.48 16 2 N -0.56 -7.42 4.91 -922.55 -4.53 -11.95 16 3 C 0.06 0.67 5.22 86.32 0.45 1.12 16 4 C -0.10 -1.29 4.88 30.65 0.15 -1.14 16 5 C -0.06 -0.89 0.53 -52.10 -0.03 -0.92 16 6 C -0.14 -1.84 7.73 71.98 0.56 -1.29 16 7 C 0.15 3.06 4.57 86.38 0.39 3.46 16 8 N -0.73 -16.69 4.98 -478.53 -2.39 -19.07 16 9 C 0.70 22.57 8.57 179.06 1.53 24.11 16 10 O -0.63 -24.93 16.34 -4.01 -0.07 -24.99 16 11 N -0.72 -24.12 5.53 -482.29 -2.67 -26.78 16 12 C 0.14 5.29 6.15 85.63 0.53 5.82 16 13 C 0.43 20.09 7.85 87.66 0.69 20.78 16 14 O -0.62 -32.10 15.24 -3.08 -0.05 -32.15 16 15 N -0.56 -28.20 5.29 -306.98 -1.62 -29.82 16 16 C -0.34 -18.60 9.68 84.04 0.81 -17.78 16 17 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 20 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.11 -1.52 4.68 30.65 0.14 -1.38 16 25 C 0.06 0.73 5.21 86.33 0.45 1.18 16 26 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.04 0.45 6.51 -2.39 -0.02 0.43 16 30 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 4.93 -2.38 -0.01 0.75 16 35 H 0.06 0.75 6.87 -2.39 -0.02 0.73 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 7.51 6.21 -92.71 -0.58 6.93 16 39 H 0.41 13.16 7.45 -92.71 -0.69 12.47 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 43 H 0.28 13.98 8.31 -92.72 -0.77 13.21 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 0.98 6.95 -2.39 -0.02 0.97 16 46 H 0.04 0.50 6.52 -2.39 -0.02 0.48 16 47 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 Total: -1.00 -66.92 370.90 -2.64 -69.56 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -1.00 Total: 44.68 kcal Atomic # 6 Polarization: 27.93 SS G_CDS: 7.37 Total: 35.30 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -10.92 Total: -136.16 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.11 Total: -57.14 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.92 -2.64 -69.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.732 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds