Wall clock time and date at job start Fri Apr 10 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47293 * 2 1 4 4 C 1.46895 * 111.00265 * 65.20267 * 3 2 1 5 5 C 1.53242 * 109.33863 * 187.25406 * 4 3 2 6 6 H 1.09000 * 109.62404 * 186.26472 * 5 4 3 7 7 C 1.53003 * 109.62933 * 65.87700 * 5 4 3 8 8 N 1.47073 * 108.52064 * 306.16477 * 5 4 3 9 9 C 1.34782 * 120.88327 * 231.20791 * 8 5 4 10 10 O 1.21582 * 119.99439 * 5.41447 * 9 8 5 11 11 N 1.34769 * 119.99738 * 185.41772 * 9 8 5 12 12 C 1.46502 * 119.99800 * 185.22060 * 11 9 8 13 13 C 1.50704 * 109.47449 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99672 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00060 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99996 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99805 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00674 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47132 * 89.99697 * 20 18 16 22 22 H 1.48499 * 109.47163 * 210.00402 * 20 18 16 23 23 H 1.48504 * 109.46922 * 330.00226 * 20 18 16 24 24 C 1.47080 * 118.23660 * 51.19109 * 8 5 4 25 25 C 1.46907 * 110.99716 * 189.50170 * 3 2 1 26 26 H 1.08998 * 109.49317 * 292.70171 * 25 3 2 27 27 C 1.53002 * 109.49023 * 52.78776 * 25 3 2 28 28 H 1.08992 * 109.47175 * 300.00841 * 1 2 3 29 29 H 1.09003 * 109.46818 * 60.00532 * 1 2 3 30 30 H 1.08998 * 109.47502 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46501 * 120.00181 * 2 1 3 32 32 H 1.09001 * 109.47154 * 239.98989 * 2 1 3 33 33 H 1.09001 * 109.48939 * 307.21107 * 4 3 2 34 34 H 1.08998 * 109.49469 * 67.26137 * 4 3 2 35 35 H 1.09005 * 109.47035 * 60.00149 * 7 5 4 36 36 H 1.08996 * 109.46679 * 179.97438 * 7 5 4 37 37 H 1.08991 * 109.46938 * 300.00018 * 7 5 4 38 38 H 0.97001 * 120.00473 * 5.21456 * 11 9 8 39 39 H 1.09005 * 109.47176 * 299.99784 * 12 11 9 40 40 H 1.09002 * 109.47036 * 59.99553 * 12 11 9 41 41 H 0.97004 * 120.00042 * 359.97438 * 15 13 12 42 42 H 0.97004 * 120.00675 * 179.97438 * 19 18 16 43 43 H 1.08992 * 109.63130 * 68.51890 * 24 8 5 44 44 H 1.09002 * 109.62776 * 188.91259 * 24 8 5 45 45 H 1.08998 * 109.47414 * 54.65522 * 27 25 3 46 46 H 1.09001 * 109.46849 * 174.65641 * 27 25 3 47 47 H 1.08999 * 109.46848 * 294.64792 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6530 2.0730 1.2449 5 6 2.0197 3.5566 1.1317 6 1 1.8531 4.0490 2.0898 7 6 1.1561 4.2189 0.0563 8 7 3.4386 3.6600 0.7589 9 6 4.2832 4.4415 1.4607 10 8 3.8997 4.9951 2.4730 11 7 5.5526 4.6093 1.0403 12 6 6.5024 5.3642 1.8614 13 6 7.8418 5.4042 1.1718 14 8 7.9884 4.8563 0.0996 15 7 8.8766 6.0486 1.7464 16 6 10.0952 6.0845 1.1193 17 1 10.2258 5.5967 0.1647 18 6 11.1620 6.7493 1.7115 19 7 11.0030 7.3433 2.8728 20 14 12.8222 6.7988 0.8567 21 1 12.8899 7.9922 -0.0245 22 1 13.9010 6.8730 1.8745 23 1 12.9955 5.5704 0.0404 24 6 3.9117 2.8876 -0.3999 25 6 3.4705 1.4303 -0.2264 26 1 3.9860 0.9936 0.6290 27 6 3.8150 0.6387 -1.4896 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 0.5803 1.9752 1.4121 34 1 2.1933 1.6270 2.0799 35 1 0.1042 4.1257 0.3266 36 1 1.4187 5.2739 -0.0217 37 1 1.3298 3.7291 -0.9017 38 1 5.8374 4.2302 0.1941 39 1 6.1345 6.3809 2.0005 40 1 6.6082 4.8801 2.8323 41 1 8.7592 6.4870 2.6037 42 1 11.7479 7.8071 3.2864 43 1 3.4783 3.2950 -1.3132 44 1 4.9990 2.9397 -0.4555 45 1 3.2279 1.0165 -2.3266 46 1 4.8765 0.7509 -1.7104 47 1 3.5863 -0.4152 -1.3316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358277665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:04 Heat of formation + Delta-G solvation = -52.235884 kcal Electronic energy + Delta-G solvation = -26889.415485 eV Core-core repulsion = 23107.556097 eV Total energy + Delta-G solvation = -3781.859387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63215 -38.92333 -38.03847 -35.32086 -34.58054 -33.91968 -33.19496 -31.45524 -31.19367 -29.22986 -27.46755 -26.51236 -25.85796 -24.47731 -22.32037 -21.99695 -20.58459 -19.63979 -18.95098 -18.30863 -17.85761 -16.40578 -16.12215 -15.61731 -15.46526 -15.35542 -14.94121 -14.60024 -14.59684 -14.36065 -14.22812 -13.95524 -13.57174 -13.30473 -12.93515 -12.56001 -12.50036 -12.35955 -12.13844 -12.12241 -12.07106 -11.87946 -11.67273 -11.61749 -11.39038 -11.20153 -11.12153 -10.97075 -10.67156 -10.45804 -10.31450 -9.89523 -9.63084 -8.95535 -8.66273 -8.61747 -8.31473 -8.09328 -6.50754 -3.92806 2.68756 3.11968 3.22255 3.27495 3.36052 3.58165 3.75974 3.99442 4.16312 4.52506 4.62966 4.69061 4.86472 4.88804 4.97044 4.98947 5.12557 5.18041 5.19816 5.21827 5.32642 5.38430 5.46031 5.48885 5.56935 5.57518 5.70627 5.73121 5.77751 5.87985 5.91275 5.97367 6.01221 6.02468 6.09565 6.23103 6.52875 6.75966 6.78173 6.82120 7.13208 7.46493 7.93115 8.18483 8.45941 8.80183 9.05239 9.40335 9.88172 10.66156 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.002660 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.434847 B =10522.985844 C =11218.354897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.044 3.956 5 C 0.160 3.840 6 H 0.102 0.898 7 C -0.152 4.152 8 N -0.629 5.629 9 C 0.709 3.291 10 O -0.597 6.597 11 N -0.725 5.725 12 C 0.127 3.873 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.119 3.881 25 C 0.069 3.931 26 H 0.046 0.954 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.406 0.594 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 -12.481 -5.088 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.255 5.255 4 C -0.084 4.084 5 C 0.056 3.944 6 H 0.120 0.880 7 C -0.210 4.210 8 N -0.366 5.366 9 C 0.411 3.589 10 O -0.476 6.476 11 N -0.384 5.384 12 C -0.001 4.001 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.005 4.005 25 C -0.041 4.041 26 H 0.064 0.936 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.587 -12.065 -5.294 23.606 hybrid contribution 1.394 -0.275 0.494 1.504 sum -18.193 -12.340 -4.799 22.501 Atomic orbital electron populations 1.21804 0.94878 1.01427 1.02488 1.22175 0.96011 0.89043 1.01071 1.62017 1.12835 1.15388 1.35226 1.22569 1.01308 0.94134 0.90425 1.21092 0.79031 0.94512 0.99799 0.87994 1.22008 0.98804 1.00354 0.99863 1.47337 1.09052 1.48007 1.32243 1.15759 0.80678 0.79687 0.82806 1.90881 1.76781 1.53559 1.26347 1.44947 1.08993 1.58634 1.25845 1.20792 0.88186 0.97154 0.93983 1.19757 0.85684 0.85305 0.87747 1.90482 1.83928 1.50788 1.23329 1.41789 1.09066 1.46370 1.21181 1.19720 0.85765 1.32644 1.05260 0.87695 1.25325 1.00216 0.96216 0.95992 1.69613 1.33405 1.34479 1.15989 0.85815 0.80603 0.78948 0.78669 1.20262 1.20810 1.19336 1.21774 0.99643 0.89857 0.89247 1.21971 0.87946 0.95892 0.98245 0.93576 1.21895 1.02187 0.99513 0.97005 0.92696 0.91783 0.92451 0.95143 0.90035 0.89302 0.94445 0.91971 0.92801 0.91286 0.75444 0.89931 0.90190 0.77011 0.91594 0.90596 0.89516 0.91321 0.91428 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.83 37.16 0.37 -0.57 16 2 C 0.04 0.33 5.36 -3.83 -0.02 0.31 16 3 N -0.53 -4.75 3.98 -226.34 -0.90 -5.65 16 4 C 0.04 0.43 4.85 -3.70 -0.02 0.41 16 5 C 0.16 1.86 3.23 -67.49 -0.22 1.64 16 6 H 0.10 1.35 7.05 -51.93 -0.37 0.98 16 7 C -0.15 -1.52 9.21 37.16 0.34 -1.18 16 8 N -0.63 -8.52 2.70 -170.62 -0.46 -8.98 16 9 C 0.71 12.24 8.30 -86.92 -0.72 11.52 16 10 O -0.60 -12.06 15.81 5.29 0.08 -11.98 16 11 N -0.73 -12.81 5.38 -66.41 -0.36 -13.16 16 12 C 0.13 2.44 6.16 -5.19 -0.03 2.40 16 13 C 0.43 9.95 7.85 -10.99 -0.09 9.87 16 14 O -0.60 -15.33 15.24 5.55 0.08 -15.24 16 15 N -0.55 -13.72 5.29 -10.97 -0.06 -13.78 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 C 0.12 1.34 5.37 -3.60 -0.02 1.32 16 25 C 0.07 0.67 2.61 -67.58 -0.18 0.49 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 C -0.15 -1.16 8.55 37.16 0.32 -0.84 16 28 H 0.05 0.35 6.39 -51.93 -0.33 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.03 0.24 8.13 -51.93 -0.42 -0.18 16 32 H 0.08 0.56 5.78 -51.93 -0.30 0.26 16 33 H 0.09 0.71 6.14 -51.93 -0.32 0.39 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.69 7.06 -51.93 -0.37 0.33 16 38 H 0.41 7.01 5.09 -40.82 -0.21 6.80 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.08 0.80 7.60 -51.93 -0.39 0.41 16 44 H 0.09 1.04 5.85 -51.93 -0.30 0.74 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.42 6.45 -51.93 -0.33 0.08 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -31.17 369.15 -8.26 -39.43 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -7.41 Total: 14.00 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: -0.51 Total: 17.52 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.05 Total: -64.84 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.17 Total: -27.22 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.17 -8.26 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.804 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds