Wall clock time and date at job start Fri Apr 10 2020 18:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47293 * 2 1 4 4 C 1.46895 * 111.00265 * 65.20267 * 3 2 1 5 5 C 1.53242 * 109.33863 * 187.25406 * 4 3 2 6 6 H 1.09000 * 109.62404 * 186.26472 * 5 4 3 7 7 C 1.53003 * 109.62933 * 65.87700 * 5 4 3 8 8 N 1.47073 * 108.52064 * 306.16477 * 5 4 3 9 9 C 1.34782 * 120.88327 * 231.20791 * 8 5 4 10 10 O 1.21582 * 119.99439 * 5.41447 * 9 8 5 11 11 N 1.34769 * 119.99738 * 185.41772 * 9 8 5 12 12 C 1.46502 * 119.99800 * 185.22060 * 11 9 8 13 13 C 1.50704 * 109.47449 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99672 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00060 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99996 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99805 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00674 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99860 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47132 * 89.99697 * 20 18 16 22 22 H 1.48499 * 109.47163 * 210.00402 * 20 18 16 23 23 H 1.48504 * 109.46922 * 330.00226 * 20 18 16 24 24 C 1.47080 * 118.23660 * 51.19109 * 8 5 4 25 25 C 1.46907 * 110.99716 * 189.50170 * 3 2 1 26 26 H 1.08998 * 109.49317 * 292.70171 * 25 3 2 27 27 C 1.53002 * 109.49023 * 52.78776 * 25 3 2 28 28 H 1.08992 * 109.47175 * 300.00841 * 1 2 3 29 29 H 1.09003 * 109.46818 * 60.00532 * 1 2 3 30 30 H 1.08998 * 109.47502 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46501 * 120.00181 * 2 1 3 32 32 H 1.09001 * 109.47154 * 239.98989 * 2 1 3 33 33 H 1.09001 * 109.48939 * 307.21107 * 4 3 2 34 34 H 1.08998 * 109.49469 * 67.26137 * 4 3 2 35 35 H 1.09005 * 109.47035 * 60.00149 * 7 5 4 36 36 H 1.08996 * 109.46679 * 179.97438 * 7 5 4 37 37 H 1.08991 * 109.46938 * 300.00018 * 7 5 4 38 38 H 0.97001 * 120.00473 * 5.21456 * 11 9 8 39 39 H 1.09005 * 109.47176 * 299.99784 * 12 11 9 40 40 H 1.09002 * 109.47036 * 59.99553 * 12 11 9 41 41 H 0.97004 * 120.00042 * 359.97438 * 15 13 12 42 42 H 0.97004 * 120.00675 * 179.97438 * 19 18 16 43 43 H 1.08992 * 109.63130 * 68.51890 * 24 8 5 44 44 H 1.09002 * 109.62776 * 188.91259 * 24 8 5 45 45 H 1.08998 * 109.47414 * 54.65522 * 27 25 3 46 46 H 1.09001 * 109.46849 * 174.65641 * 27 25 3 47 47 H 1.08999 * 109.46848 * 294.64792 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6530 2.0730 1.2449 5 6 2.0197 3.5566 1.1317 6 1 1.8531 4.0490 2.0898 7 6 1.1561 4.2189 0.0563 8 7 3.4386 3.6600 0.7589 9 6 4.2832 4.4415 1.4607 10 8 3.8997 4.9951 2.4730 11 7 5.5526 4.6093 1.0403 12 6 6.5024 5.3642 1.8614 13 6 7.8418 5.4042 1.1718 14 8 7.9884 4.8563 0.0996 15 7 8.8766 6.0486 1.7464 16 6 10.0952 6.0845 1.1193 17 1 10.2258 5.5967 0.1647 18 6 11.1620 6.7493 1.7115 19 7 11.0030 7.3433 2.8728 20 14 12.8222 6.7988 0.8567 21 1 12.8899 7.9922 -0.0245 22 1 13.9010 6.8730 1.8745 23 1 12.9955 5.5704 0.0404 24 6 3.9117 2.8876 -0.3999 25 6 3.4705 1.4303 -0.2264 26 1 3.9860 0.9936 0.6290 27 6 3.8150 0.6387 -1.4896 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5139 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 0.5803 1.9752 1.4121 34 1 2.1933 1.6270 2.0799 35 1 0.1042 4.1257 0.3266 36 1 1.4187 5.2739 -0.0217 37 1 1.3298 3.7291 -0.9017 38 1 5.8374 4.2302 0.1941 39 1 6.1345 6.3809 2.0005 40 1 6.6082 4.8801 2.8323 41 1 8.7592 6.4870 2.6037 42 1 11.7479 7.8071 3.2864 43 1 3.4783 3.2950 -1.3132 44 1 4.9990 2.9397 -0.4555 45 1 3.2279 1.0165 -2.3266 46 1 4.8765 0.7509 -1.7104 47 1 3.5863 -0.4152 -1.3316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:03 Heat of formation + Delta-G solvation = -74.423182 kcal Electronic energy + Delta-G solvation = -26890.377598 eV Core-core repulsion = 23107.556097 eV Total energy + Delta-G solvation = -3782.821501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78406 -40.37493 -39.53499 -36.37421 -36.23215 -35.52699 -34.20276 -33.38174 -32.15775 -29.97804 -29.03775 -27.47513 -26.65448 -26.31507 -23.05147 -23.01954 -21.58621 -21.38499 -20.31806 -19.93608 -19.25424 -17.66090 -17.38610 -16.97809 -16.81680 -16.59118 -16.20241 -16.00173 -15.73049 -15.65938 -15.47526 -15.18281 -14.86470 -14.48990 -14.05118 -13.82485 -13.55483 -13.53677 -13.22741 -13.15300 -13.09276 -12.91011 -12.83345 -12.74099 -12.46208 -12.38177 -12.19956 -12.12566 -12.01815 -11.74935 -11.57641 -11.40383 -11.26978 -10.57020 -10.34781 -10.10541 -9.69548 -9.24008 -8.51383 -6.01781 1.36127 1.41107 1.46767 1.56484 1.87881 2.02888 2.27253 2.75724 2.83342 3.13426 3.15738 3.69353 3.81772 3.91318 4.08707 4.14298 4.19263 4.26042 4.36812 4.40650 4.43086 4.45354 4.50672 4.60777 4.63843 4.69119 4.77018 4.83047 4.90824 4.96786 5.06803 5.09013 5.18550 5.27620 5.32684 5.38051 5.38708 5.43191 5.49799 5.84359 5.91410 6.04854 6.13298 6.46964 6.84815 7.02598 7.39119 7.46722 7.92986 8.65568 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.002660 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.434847 B =10522.985844 C =11218.354897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.526 5.526 4 C 0.052 3.948 5 C 0.153 3.847 6 H 0.083 0.917 7 C -0.141 4.141 8 N -0.623 5.623 9 C 0.706 3.294 10 O -0.630 6.630 11 N -0.726 5.726 12 C 0.141 3.859 13 C 0.435 3.565 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 C 0.116 3.884 25 C 0.072 3.928 26 H 0.028 0.972 27 C -0.142 4.142 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.021 0.979 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.299 -13.470 -6.060 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.251 5.251 4 C -0.077 4.077 5 C 0.050 3.950 6 H 0.101 0.899 7 C -0.199 4.199 8 N -0.359 5.359 9 C 0.407 3.593 10 O -0.511 6.511 11 N -0.385 5.385 12 C 0.012 3.988 13 C 0.222 3.778 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.007 4.007 25 C -0.037 4.037 26 H 0.046 0.954 27 C -0.199 4.199 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.532 -13.081 -6.281 25.142 hybrid contribution 1.592 -0.009 0.791 1.778 sum -18.940 -13.091 -5.489 23.669 Atomic orbital electron populations 1.21771 0.93673 1.02261 1.02424 1.22265 0.96952 0.87870 1.01290 1.62061 1.12077 1.16491 1.34484 1.22498 1.02355 0.92554 0.90266 1.21289 0.78084 0.96056 0.99592 0.89870 1.21919 0.99643 0.99074 0.99270 1.47458 1.09435 1.46894 1.32131 1.15886 0.80652 0.79949 0.82769 1.90852 1.77323 1.55092 1.27877 1.44881 1.09105 1.58718 1.25794 1.20597 0.86185 0.98065 0.93958 1.20344 0.86540 0.83723 0.87238 1.90458 1.84673 1.51453 1.24516 1.41834 1.09107 1.47065 1.21397 1.19739 0.87283 1.34156 1.05376 0.89488 1.26149 1.03274 0.95252 0.96524 1.69681 1.34620 1.34545 1.16802 0.84857 0.76319 0.78918 0.77824 1.19539 1.19663 1.19362 1.21933 0.99261 0.90764 0.88730 1.21917 0.88423 0.94716 0.98675 0.95366 1.21853 1.02238 0.99864 0.95984 0.92747 0.91767 0.91254 0.95694 0.89044 0.87104 0.96063 0.89728 0.94314 0.90924 0.75175 0.89149 0.89203 0.76716 0.91056 0.89345 0.90433 0.90581 0.91565 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.83 71.98 0.71 -0.71 16 2 C 0.04 0.55 5.36 86.30 0.46 1.01 16 3 N -0.53 -8.48 3.98 -870.01 -3.46 -11.95 16 4 C 0.05 0.94 4.85 86.39 0.42 1.36 16 5 C 0.15 3.46 3.23 44.96 0.15 3.61 16 6 H 0.08 2.22 7.05 -2.39 -0.02 2.20 16 7 C -0.14 -2.60 9.21 71.98 0.66 -1.94 16 8 N -0.62 -16.77 2.70 -811.97 -2.20 -18.97 16 9 C 0.71 24.60 8.30 179.06 1.49 26.08 16 10 O -0.63 -25.82 15.81 -3.97 -0.06 -25.88 16 11 N -0.73 -25.84 5.38 -482.29 -2.60 -28.44 16 12 C 0.14 5.42 6.16 85.63 0.53 5.94 16 13 C 0.43 20.43 7.85 87.66 0.69 21.12 16 14 O -0.62 -32.40 15.24 -3.07 -0.05 -32.45 16 15 N -0.56 -28.40 5.29 -306.99 -1.62 -30.02 16 16 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 17 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 19 N -0.92 -49.00 13.05 21.66 0.28 -48.71 16 20 Si 1.00 41.82 29.55 68.60 2.03 43.84 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.12 2.55 5.37 86.35 0.46 3.02 16 25 C 0.07 1.33 2.61 45.00 0.12 1.45 16 26 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 27 C -0.14 -1.95 8.55 71.98 0.62 -1.34 16 28 H 0.05 0.54 6.39 -2.39 -0.02 0.53 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.02 0.35 8.13 -2.39 -0.02 0.34 16 32 H 0.09 1.00 5.78 -2.39 -0.01 0.99 16 33 H 0.11 1.53 6.14 -2.39 -0.01 1.52 16 34 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.30 7.06 -2.39 -0.02 1.29 16 38 H 0.41 14.23 5.09 -92.71 -0.47 13.76 16 39 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 42 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.09 1.75 7.60 -2.39 -0.02 1.73 16 44 H 0.08 1.86 5.85 -2.39 -0.01 1.84 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.83 6.45 -2.39 -0.02 0.82 16 Total: -1.00 -66.74 369.15 -0.31 -67.05 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.21 Total: 43.83 kcal Atomic # 6 Polarization: 34.11 SS G_CDS: 7.58 Total: 41.69 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -9.60 Total: -138.09 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -0.11 Total: -58.32 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -66.74 -0.31 -67.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.371 kcal (2) G-P(sol) polarization free energy of solvation -66.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds