Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46900 * 110.99819 * 65.16175 * 3 2 1 5 5 C 1.53245 * 109.34138 * 187.24982 * 4 3 2 6 6 H 1.08993 * 109.62784 * 65.87558 * 5 4 3 7 7 C 1.52998 * 109.63210 * 186.46033 * 5 4 3 8 8 N 1.47077 * 108.51836 * 306.17234 * 5 4 3 9 9 C 1.34785 * 120.87934 * 231.18659 * 8 5 4 10 10 O 1.21578 * 120.00014 * 4.16227 * 9 8 5 11 11 N 1.34781 * 119.99831 * 184.16591 * 9 8 5 12 12 C 1.46497 * 119.99671 * 175.00829 * 11 9 8 13 13 C 1.50705 * 109.46928 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00121 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99827 * 180.02562 * 13 12 11 16 16 C 1.37099 * 120.00089 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99781 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00352 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47394 * 270.00133 * 20 18 16 22 22 H 1.48505 * 109.47018 * 30.00355 * 20 18 16 23 23 H 1.48500 * 109.47120 * 149.99908 * 20 18 16 24 24 C 1.47079 * 118.24214 * 51.45303 * 8 5 4 25 25 C 1.46898 * 110.99777 * 189.46223 * 3 2 1 26 26 H 1.09008 * 109.49092 * 292.73256 * 25 3 2 27 27 C 1.52993 * 109.49410 * 52.78713 * 25 3 2 28 28 H 1.09003 * 109.47166 * 300.00193 * 1 2 3 29 29 H 1.09004 * 109.47417 * 59.99375 * 1 2 3 30 30 H 1.08996 * 109.47583 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46761 * 240.00269 * 2 1 3 32 32 H 1.08994 * 109.46666 * 120.00549 * 2 1 3 33 33 H 1.09002 * 109.49673 * 67.29378 * 4 3 2 34 34 H 1.08997 * 109.51482 * 307.22497 * 4 3 2 35 35 H 1.08990 * 109.47240 * 185.36073 * 7 5 4 36 36 H 1.09000 * 109.46689 * 305.36395 * 7 5 4 37 37 H 1.09004 * 109.46782 * 65.35691 * 7 5 4 38 38 H 0.96996 * 120.00120 * 355.01187 * 11 9 8 39 39 H 1.08997 * 109.47402 * 60.00328 * 12 11 9 40 40 H 1.09000 * 109.47418 * 300.00037 * 12 11 9 41 41 H 0.97007 * 120.00133 * 359.97438 * 15 13 12 42 42 H 0.96996 * 120.00120 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.62498 * 68.25106 * 24 8 5 44 44 H 1.08998 * 109.63070 * 188.83123 * 24 8 5 45 45 H 1.08997 * 109.47001 * 61.53343 * 27 25 3 46 46 H 1.09009 * 109.47155 * 181.52906 * 27 25 3 47 47 H 1.08998 * 109.47127 * 301.52846 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6520 2.0733 1.2446 5 6 2.0188 3.5569 1.1315 6 1 1.4041 4.0286 0.3649 7 6 1.7885 4.2473 2.4772 8 7 3.4380 3.6602 0.7595 9 6 4.2819 4.4422 1.4616 10 8 3.8915 5.0144 2.4607 11 7 5.5588 4.5898 1.0559 12 6 6.4457 5.5237 1.7540 13 6 7.8072 5.5012 1.1083 14 8 8.0163 4.7761 0.1589 15 7 8.7929 6.2862 1.5867 16 6 10.0317 6.2654 0.9997 17 1 10.2176 5.6202 0.1537 18 6 11.0477 7.0750 1.4924 19 7 10.8214 7.8603 2.5215 20 14 12.7357 7.0461 0.6931 21 1 13.5773 6.0144 1.3508 22 1 12.5947 6.7238 -0.7497 23 1 13.3770 8.3771 0.8425 24 6 3.9106 2.8923 -0.4025 25 6 3.4705 1.4303 -0.2255 26 1 3.9854 0.9933 0.6302 27 6 3.8160 0.6385 -1.4882 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1922 1.6278 2.0799 34 1 0.5793 1.9755 1.4115 35 1 1.9586 5.3185 2.3698 36 1 0.7635 4.0731 2.8043 37 1 2.4796 3.8420 3.2164 38 1 5.8904 4.0778 0.3018 39 1 6.5340 5.2284 2.7995 40 1 6.0324 6.5306 1.6946 41 1 8.6258 6.8659 2.3463 42 1 11.5307 8.4253 2.8657 43 1 3.4742 3.3014 -1.3137 44 1 4.9979 2.9446 -0.4583 45 1 3.3234 1.0927 -2.3479 46 1 4.8954 0.6497 -1.6401 47 1 3.4755 -0.3908 -1.3761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358277669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -37.005978 kcal Electronic energy + Delta-G solvation = -26917.819380 eV Core-core repulsion = 23136.620411 eV Total energy + Delta-G solvation = -3781.198969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71598 -38.87002 -38.08499 -35.22160 -34.79130 -33.99283 -33.10829 -31.44945 -31.16751 -29.34218 -27.50287 -26.42104 -25.36200 -24.47579 -22.35570 -22.11331 -20.51648 -19.66477 -19.40979 -18.14037 -17.62639 -16.33977 -16.27400 -15.71173 -15.57500 -15.42259 -14.73022 -14.64232 -14.61939 -14.50247 -14.11536 -13.97136 -13.37133 -13.26868 -12.92918 -12.78080 -12.47944 -12.25000 -12.10233 -12.07506 -12.01056 -11.86747 -11.64821 -11.62360 -11.42682 -11.18681 -11.12606 -11.04113 -10.78393 -10.45777 -10.31131 -9.63120 -9.14560 -8.85960 -8.66829 -8.61591 -8.31117 -8.09304 -6.50850 -3.92850 2.69367 3.11857 3.22188 3.27495 3.37633 3.55661 3.76048 3.99038 4.16047 4.49997 4.62804 4.70640 4.85331 4.88325 4.98547 5.04930 5.12109 5.17398 5.17963 5.19205 5.32345 5.35677 5.46704 5.55491 5.58389 5.64197 5.71644 5.76151 5.79028 5.90796 5.92285 6.00643 6.02555 6.09591 6.23083 6.36822 6.65992 6.76215 6.80386 6.87332 7.12217 7.46461 7.93138 8.19744 8.45968 8.83151 9.05256 9.40333 9.88210 10.66098 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002710 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.070305 B =10329.185549 C =11276.874656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.042 3.958 5 C 0.168 3.832 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.631 5.631 9 C 0.708 3.292 10 O -0.588 6.588 11 N -0.727 5.727 12 C 0.128 3.872 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.269 1.269 23 H -0.283 1.283 24 C 0.120 3.880 25 C 0.068 3.932 26 H 0.047 0.953 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 -12.718 -3.874 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.087 4.087 5 C 0.064 3.936 6 H 0.093 0.907 7 C -0.192 4.192 8 N -0.369 5.369 9 C 0.409 3.591 10 O -0.468 6.468 11 N -0.387 5.387 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.486 6.486 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.193 1.193 23 H -0.208 1.208 24 C -0.004 4.004 25 C -0.042 4.042 26 H 0.065 0.935 27 C -0.208 4.208 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.244 0.756 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.085 -12.351 -4.058 23.092 hybrid contribution 1.399 -0.327 0.431 1.500 sum -17.685 -12.678 -3.627 22.061 Atomic orbital electron populations 1.21810 0.94849 1.01468 1.02514 1.22197 0.96045 0.89033 1.01114 1.62002 1.12920 1.15526 1.35419 1.22671 1.01304 0.94343 0.90361 1.21153 0.79932 0.94338 0.98202 0.90740 1.22152 0.99283 1.02568 0.95186 1.47336 1.09159 1.48666 1.31762 1.15832 0.80674 0.79815 0.82730 1.90938 1.75969 1.53231 1.26632 1.45081 1.09660 1.46543 1.37378 1.20770 0.89224 0.93603 0.96433 1.19774 0.86032 0.85359 0.87350 1.90481 1.82669 1.44617 1.30786 1.41792 1.09833 1.36715 1.30088 1.19720 0.86117 1.23329 1.14214 0.87709 1.25325 1.00348 0.95780 0.96313 1.69615 1.34694 1.25355 1.23829 0.85813 0.81100 0.77541 0.79573 1.20288 1.19328 1.20803 1.21881 0.99672 0.89787 0.89031 1.22073 0.87917 0.95928 0.98243 0.93545 1.21928 1.02068 0.99728 0.97040 0.92681 0.91772 0.92393 0.89917 0.95114 0.94379 0.89371 0.90284 0.94180 0.91064 0.75619 0.90048 0.90112 0.77015 0.91600 0.90488 0.89485 0.91353 0.91450 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.83 37.16 0.37 -0.61 16 2 C 0.04 0.34 5.36 -3.82 -0.02 0.32 16 3 N -0.53 -5.02 4.48 -226.07 -1.01 -6.04 16 4 C 0.04 0.42 4.75 -3.70 -0.02 0.40 16 5 C 0.17 1.97 3.65 -67.49 -0.25 1.73 16 6 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.13 -1.70 7.61 37.16 0.28 -1.41 16 8 N -0.63 -8.55 3.00 -170.33 -0.51 -9.06 16 9 C 0.71 11.87 8.21 -86.91 -0.71 11.16 16 10 O -0.59 -11.07 11.86 5.30 0.06 -11.01 16 11 N -0.73 -12.67 5.44 -66.41 -0.36 -13.03 16 12 C 0.13 2.42 6.16 -5.19 -0.03 2.39 16 13 C 0.43 9.91 7.85 -10.98 -0.09 9.82 16 14 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 15 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 20 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.12 1.37 5.87 -3.36 -0.02 1.36 16 25 C 0.07 0.67 2.62 -67.36 -0.18 0.50 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 C -0.15 -1.19 8.81 37.15 0.33 -0.87 16 28 H 0.05 0.36 6.38 -51.93 -0.33 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.58 5.63 -51.93 -0.29 0.29 16 32 H 0.03 0.25 8.13 -51.93 -0.42 -0.17 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.74 6.14 -51.93 -0.32 0.42 16 35 H 0.08 1.16 6.73 -51.93 -0.35 0.82 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.06 6.81 -51.93 -0.35 0.70 16 38 H 0.40 6.95 4.96 -40.82 -0.20 6.74 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.04 5.71 -51.93 -0.30 0.75 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 47 H 0.06 0.44 6.03 -51.93 -0.31 0.12 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -30.48 364.58 -8.54 -39.03 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -7.36 Total: 14.39 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: -0.58 Total: 16.91 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -1.22 Total: -65.11 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.15 Total: -26.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.48 -8.54 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.019 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds