Wall clock time and date at job start Fri Apr 10 2020 18:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47036 * 2 1 4 4 C 1.46900 * 110.99819 * 65.16175 * 3 2 1 5 5 C 1.53245 * 109.34138 * 187.24982 * 4 3 2 6 6 H 1.08993 * 109.62784 * 65.87558 * 5 4 3 7 7 C 1.52998 * 109.63210 * 186.46033 * 5 4 3 8 8 N 1.47077 * 108.51836 * 306.17234 * 5 4 3 9 9 C 1.34785 * 120.87934 * 231.18659 * 8 5 4 10 10 O 1.21578 * 120.00014 * 4.16227 * 9 8 5 11 11 N 1.34781 * 119.99831 * 184.16591 * 9 8 5 12 12 C 1.46497 * 119.99671 * 175.00829 * 11 9 8 13 13 C 1.50705 * 109.46928 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00121 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99827 * 180.02562 * 13 12 11 16 16 C 1.37099 * 120.00089 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99781 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00352 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47394 * 270.00133 * 20 18 16 22 22 H 1.48505 * 109.47018 * 30.00355 * 20 18 16 23 23 H 1.48500 * 109.47120 * 149.99908 * 20 18 16 24 24 C 1.47079 * 118.24214 * 51.45303 * 8 5 4 25 25 C 1.46898 * 110.99777 * 189.46223 * 3 2 1 26 26 H 1.09008 * 109.49092 * 292.73256 * 25 3 2 27 27 C 1.52993 * 109.49410 * 52.78713 * 25 3 2 28 28 H 1.09003 * 109.47166 * 300.00193 * 1 2 3 29 29 H 1.09004 * 109.47417 * 59.99375 * 1 2 3 30 30 H 1.08996 * 109.47583 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46761 * 240.00269 * 2 1 3 32 32 H 1.08994 * 109.46666 * 120.00549 * 2 1 3 33 33 H 1.09002 * 109.49673 * 67.29378 * 4 3 2 34 34 H 1.08997 * 109.51482 * 307.22497 * 4 3 2 35 35 H 1.08990 * 109.47240 * 185.36073 * 7 5 4 36 36 H 1.09000 * 109.46689 * 305.36395 * 7 5 4 37 37 H 1.09004 * 109.46782 * 65.35691 * 7 5 4 38 38 H 0.96996 * 120.00120 * 355.01187 * 11 9 8 39 39 H 1.08997 * 109.47402 * 60.00328 * 12 11 9 40 40 H 1.09000 * 109.47418 * 300.00037 * 12 11 9 41 41 H 0.97007 * 120.00133 * 359.97438 * 15 13 12 42 42 H 0.96996 * 120.00120 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.62498 * 68.25106 * 24 8 5 44 44 H 1.08998 * 109.63070 * 188.83123 * 24 8 5 45 45 H 1.08997 * 109.47001 * 61.53343 * 27 25 3 46 46 H 1.09009 * 109.47155 * 181.52906 * 27 25 3 47 47 H 1.08998 * 109.47127 * 301.52846 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6520 2.0733 1.2446 5 6 2.0188 3.5569 1.1315 6 1 1.4041 4.0286 0.3649 7 6 1.7885 4.2473 2.4772 8 7 3.4380 3.6602 0.7595 9 6 4.2819 4.4422 1.4616 10 8 3.8915 5.0144 2.4607 11 7 5.5588 4.5898 1.0559 12 6 6.4457 5.5237 1.7540 13 6 7.8072 5.5012 1.1083 14 8 8.0163 4.7761 0.1589 15 7 8.7929 6.2862 1.5867 16 6 10.0317 6.2654 0.9997 17 1 10.2176 5.6202 0.1537 18 6 11.0477 7.0750 1.4924 19 7 10.8214 7.8603 2.5215 20 14 12.7357 7.0461 0.6931 21 1 13.5773 6.0144 1.3508 22 1 12.5947 6.7238 -0.7497 23 1 13.3770 8.3771 0.8425 24 6 3.9106 2.8923 -0.4025 25 6 3.4705 1.4303 -0.2255 26 1 3.9854 0.9933 0.6302 27 6 3.8160 0.6385 -1.4882 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1922 1.6278 2.0799 34 1 0.5793 1.9755 1.4115 35 1 1.9586 5.3185 2.3698 36 1 0.7635 4.0731 2.8043 37 1 2.4796 3.8420 3.2164 38 1 5.8904 4.0778 0.3018 39 1 6.5340 5.2284 2.7995 40 1 6.0324 6.5306 1.6946 41 1 8.6258 6.8659 2.3463 42 1 11.5307 8.4253 2.8657 43 1 3.4742 3.3014 -1.3137 44 1 4.9979 2.9446 -0.4583 45 1 3.3234 1.0927 -2.3479 46 1 4.8954 0.6497 -1.6401 47 1 3.4755 -0.3908 -1.3761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358277669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:07 Heat of formation + Delta-G solvation = -58.987333 kcal Electronic energy + Delta-G solvation = -26918.772564 eV Core-core repulsion = 23136.620411 eV Total energy + Delta-G solvation = -3782.152152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86823 -40.33787 -39.48786 -36.45704 -36.11745 -35.70401 -34.15556 -33.37592 -32.13490 -30.14158 -29.04318 -27.42112 -26.32056 -26.20430 -23.22586 -23.05954 -21.45360 -21.32017 -20.70825 -20.05295 -18.93090 -17.54752 -17.44754 -17.15777 -16.83433 -16.50165 -16.24077 -16.03700 -15.84983 -15.60741 -15.47554 -15.06969 -14.89462 -14.42473 -13.96212 -13.84936 -13.67278 -13.54151 -13.39228 -13.24627 -12.96028 -12.90832 -12.78473 -12.71311 -12.53187 -12.45842 -12.22716 -12.12647 -12.00492 -11.93668 -11.57378 -11.43948 -10.56452 -10.41209 -10.21677 -10.09233 -9.66451 -9.26316 -8.51186 -6.01469 1.36203 1.41698 1.48801 1.56762 1.89026 2.08559 2.27464 2.75636 2.81147 3.14560 3.16006 3.67906 3.81357 3.89912 4.09949 4.12262 4.20765 4.22480 4.31233 4.41788 4.44339 4.45564 4.49451 4.61437 4.64559 4.67405 4.74450 4.83807 4.86276 4.95336 5.06696 5.16182 5.19664 5.24832 5.33243 5.37288 5.40761 5.41727 5.65926 5.83312 5.92015 6.03818 6.11757 6.47550 6.88971 7.03062 7.41671 7.52272 7.93805 8.65791 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002710 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.070305 B =10329.185549 C =11276.874656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.050 3.950 5 C 0.163 3.837 6 H 0.086 0.914 7 C -0.124 4.124 8 N -0.627 5.627 9 C 0.704 3.296 10 O -0.612 6.612 11 N -0.729 5.729 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.272 1.272 24 C 0.117 3.883 25 C 0.071 3.929 26 H 0.030 0.970 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.405 0.595 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.893 -13.669 -4.672 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.259 5.259 4 C -0.079 4.079 5 C 0.060 3.940 6 H 0.104 0.896 7 C -0.182 4.182 8 N -0.364 5.364 9 C 0.405 3.595 10 O -0.493 6.493 11 N -0.389 5.389 12 C 0.014 3.986 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.006 4.006 25 C -0.038 4.038 26 H 0.048 0.952 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.122 -13.326 -4.862 24.619 hybrid contribution 1.617 -0.070 0.678 1.755 sum -18.504 -13.396 -4.184 23.224 Atomic orbital electron populations 1.21781 0.93672 1.02347 1.02395 1.22290 0.96969 0.87860 1.01371 1.62046 1.12295 1.16688 1.34830 1.22592 1.02319 0.92821 0.90176 1.21343 0.78888 0.95782 0.97947 0.89614 1.21967 1.00307 1.00835 0.95092 1.47454 1.09514 1.47759 1.31713 1.15972 0.80572 0.80140 0.82766 1.90936 1.76303 1.54353 1.27729 1.45046 1.09937 1.46523 1.37440 1.20564 0.87000 0.94692 0.96362 1.20398 0.87013 0.83905 0.86586 1.90457 1.83489 1.45349 1.31909 1.41838 1.09820 1.37403 1.30396 1.19733 0.87659 1.24396 1.14754 0.89547 1.26144 1.03550 0.94910 0.96612 1.69683 1.35943 1.25544 1.24472 0.84859 0.76589 0.78016 0.78470 1.19563 1.19387 1.19652 1.22028 0.99318 0.90676 0.88547 1.22017 0.88302 0.94836 0.98672 0.95240 1.21891 1.02167 1.00093 0.96007 0.92706 0.91895 0.91096 0.88945 0.95568 0.95861 0.87241 0.92652 0.91278 0.93607 0.75486 0.89269 0.89051 0.76710 0.91069 0.89377 0.90351 0.90770 0.91502 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.83 71.98 0.71 -0.80 16 2 C 0.04 0.56 5.36 86.31 0.46 1.02 16 3 N -0.53 -9.03 4.48 -869.14 -3.89 -12.93 16 4 C 0.05 0.91 4.75 86.39 0.41 1.32 16 5 C 0.16 3.66 3.65 44.96 0.16 3.82 16 6 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 7 C -0.12 -3.08 7.61 71.98 0.55 -2.53 16 8 N -0.63 -16.73 3.00 -811.07 -2.44 -19.16 16 9 C 0.70 23.71 8.21 179.05 1.47 25.18 16 10 O -0.61 -23.31 11.86 -3.96 -0.05 -23.36 16 11 N -0.73 -25.60 5.44 -482.30 -2.62 -28.22 16 12 C 0.14 5.41 6.16 85.64 0.53 5.94 16 13 C 0.43 20.34 7.85 87.66 0.69 21.03 16 14 O -0.62 -32.47 15.24 -3.05 -0.05 -32.52 16 15 N -0.56 -28.37 5.29 -306.98 -1.62 -29.99 16 16 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 17 H 0.09 5.02 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 19 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 20 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 C 0.12 2.60 5.87 86.50 0.51 3.11 16 25 C 0.07 1.34 2.62 45.15 0.12 1.46 16 26 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 27 C -0.14 -2.04 8.81 71.98 0.63 -1.41 16 28 H 0.05 0.57 6.38 -2.39 -0.02 0.56 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 1.05 5.63 -2.39 -0.01 1.04 16 32 H 0.03 0.38 8.13 -2.39 -0.02 0.36 16 33 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.11 1.55 6.14 -2.39 -0.01 1.54 16 35 H 0.05 1.63 6.73 -2.39 -0.02 1.62 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 1.36 6.81 -2.39 -0.02 1.35 16 38 H 0.41 14.08 4.96 -92.71 -0.46 13.62 16 39 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.40 19.48 7.90 -92.70 -0.73 18.75 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.88 5.71 -2.39 -0.01 1.86 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 47 H 0.07 0.88 6.03 -2.39 -0.01 0.87 16 Total: -1.00 -65.35 364.58 -1.04 -66.39 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.20 Total: 44.37 kcal Atomic # 6 Polarization: 32.70 SS G_CDS: 7.52 Total: 40.22 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -10.29 Total: -138.96 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.09 Total: -55.88 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -65.35 -1.04 -66.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358277669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.400 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds