Wall clock time and date at job start Fri Apr 10 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47368 * 2 1 4 4 C 1.46898 * 110.99718 * 293.95432 * 3 2 1 5 5 C 1.46897 * 111.00437 * 169.99804 * 3 2 1 6 6 C 1.52997 * 109.47104 * 287.88477 * 5 3 2 7 7 H 1.08994 * 110.89220 * 53.39452 * 6 5 3 8 8 C 1.55155 * 111.00450 * 177.27786 * 6 5 3 9 9 C 1.54320 * 103.10686 * 153.52283 * 8 6 5 10 10 N 1.47322 * 107.11488 * 338.02277 * 9 8 6 11 11 C 1.34784 * 125.61279 * 178.89309 * 10 9 8 12 12 O 1.21588 * 119.99596 * 179.77361 * 11 10 9 13 13 N 1.34776 * 119.99869 * 359.77339 * 11 10 9 14 14 C 1.46500 * 119.99719 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47083 * 180.02562 * 14 13 11 16 16 O 1.21298 * 120.00270 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00166 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99897 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99757 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99908 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47291 * 90.00620 * 22 20 18 24 24 H 1.48508 * 109.47168 * 210.00309 * 22 20 18 25 25 H 1.48503 * 109.47153 * 330.00290 * 22 20 18 26 26 C 1.47419 * 108.73871 * 358.69992 * 10 9 8 27 27 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47220 * 299.99857 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00239 * 1 2 3 30 30 H 1.08998 * 109.47220 * 240.00143 * 2 1 3 31 31 H 1.09001 * 109.47017 * 119.99761 * 2 1 3 32 32 H 1.08996 * 109.47487 * 302.02314 * 4 3 2 33 33 H 1.09005 * 109.47456 * 62.02628 * 4 3 2 34 34 H 1.08997 * 109.47152 * 182.02151 * 4 3 2 35 35 H 1.09000 * 109.46918 * 167.87801 * 5 3 2 36 36 H 1.09005 * 109.46517 * 47.87921 * 5 3 2 37 37 H 1.09004 * 110.72173 * 271.97525 * 8 6 5 38 38 H 1.09006 * 110.72150 * 35.06753 * 8 6 5 39 39 H 1.09000 * 109.88680 * 97.30785 * 9 8 6 40 40 H 1.09000 * 109.88230 * 218.48175 * 9 8 6 41 41 H 0.96994 * 120.00084 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.46903 * 299.99710 * 14 13 11 43 43 H 1.08992 * 109.47627 * 59.99700 * 14 13 11 44 44 H 0.97000 * 119.99558 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99791 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.36363 * 265.44718 * 26 10 9 47 47 H 1.09001 * 110.46461 * 143.17391 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4312 0.2382 6 6 3.7563 1.0847 1.7003 7 1 3.2925 0.1370 1.9738 8 6 5.2831 1.0563 1.9751 9 6 5.3739 1.3841 3.4803 10 7 4.1282 2.0789 3.8487 11 6 3.8083 2.5149 5.0833 12 8 2.7495 3.0821 5.2723 13 7 4.6619 2.3220 6.1083 14 6 4.3139 2.7954 7.4503 15 6 5.4288 2.4585 8.4066 16 8 6.4168 1.8795 8.0066 17 7 5.3278 2.7997 9.7066 18 6 6.3419 2.4927 10.5766 19 1 7.2215 1.9771 10.2204 20 6 6.2379 2.8449 11.9167 21 7 5.1674 3.4718 12.3502 22 14 7.6199 2.4273 13.1021 23 1 8.5946 3.5469 13.1402 24 1 7.0591 2.2128 14.4604 25 1 8.3045 1.1901 12.6481 26 6 3.2918 2.2226 2.6433 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0901 1.5169 -2.0955 33 1 0.5857 2.1112 -1.3527 34 1 2.0756 3.0786 -1.2417 35 1 3.8405 2.4327 0.0220 36 1 3.9665 0.7107 -0.4107 37 1 5.6935 0.0674 1.7703 38 1 5.7956 1.8150 1.3835 39 1 5.4678 0.4629 4.0554 40 1 6.2318 2.0298 3.6680 41 1 5.5067 1.8698 5.9574 42 1 4.1686 3.8755 7.4282 43 1 3.3942 2.3118 7.7791 44 1 4.5376 3.2624 10.0265 45 1 5.0947 3.7173 13.2858 46 1 3.4609 3.1937 2.1778 47 1 2.2380 2.1012 2.8939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358310125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:31 Heat of formation + Delta-G solvation = -61.430800 kcal Electronic energy + Delta-G solvation = -25811.411822 eV Core-core repulsion = 22029.153713 eV Total energy + Delta-G solvation = -3782.258109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20568 -38.80509 -38.08932 -36.93098 -34.37924 -33.61884 -32.50600 -31.34151 -30.84637 -29.43049 -27.90015 -26.55827 -24.90861 -24.14040 -23.02152 -21.53326 -20.28836 -19.67453 -19.54465 -18.26240 -17.78511 -16.69218 -15.97542 -15.75789 -15.69777 -15.30328 -15.20788 -14.72242 -14.62442 -14.19491 -14.06611 -13.70264 -13.63424 -13.43599 -13.16083 -12.84175 -12.61922 -12.53967 -12.26836 -12.12741 -12.03537 -11.80795 -11.64516 -11.60672 -11.41822 -11.20164 -11.10558 -11.07087 -10.71999 -10.44185 -10.29564 -9.92963 -9.60993 -8.83844 -8.68874 -8.58974 -8.34591 -8.07005 -6.48704 -3.90620 2.77531 3.13481 3.23556 3.29019 3.46276 3.48135 3.78596 4.07248 4.21771 4.35678 4.44808 4.55201 4.66984 4.81324 4.93635 4.94192 5.02591 5.09905 5.12736 5.20045 5.20170 5.24602 5.37220 5.39490 5.45510 5.53956 5.58162 5.60641 5.67926 5.81171 5.88496 5.93184 5.99275 6.03414 6.06337 6.12166 6.33815 6.68708 6.69659 6.83244 7.27417 7.48491 7.95372 8.25948 8.48474 8.87492 9.07398 9.42738 9.90787 10.68239 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034372 B = 0.002102 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.409658 B =13315.472079 C =13685.265782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.023 3.977 5 C 0.067 3.933 6 C -0.098 4.098 7 H 0.086 0.914 8 C -0.124 4.124 9 C 0.099 3.901 10 N -0.642 5.642 11 C 0.722 3.278 12 O -0.595 6.595 13 N -0.723 5.723 14 C 0.128 3.872 15 C 0.430 3.570 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.145 3.855 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.061 0.939 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -5.172 -25.782 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.080 4.080 3 N -0.266 5.266 4 C -0.125 4.125 5 C -0.061 4.061 6 C -0.118 4.118 7 H 0.104 0.896 8 C -0.163 4.163 9 C -0.025 4.025 10 N -0.381 5.381 11 C 0.424 3.576 12 O -0.474 6.474 13 N -0.381 5.381 14 C 0.000 4.000 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.185 5.185 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.194 1.194 26 C 0.022 3.978 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.244 0.756 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.505 -4.783 -25.184 26.218 hybrid contribution 1.016 -0.520 0.162 1.153 sum -4.489 -5.303 -25.021 25.968 Atomic orbital electron populations 1.21800 0.94780 1.01574 1.02605 1.22159 0.96289 0.88769 1.00771 1.61974 1.13664 1.16133 1.34858 1.22414 1.01900 0.98788 0.89374 1.22056 0.87667 1.01525 0.94880 1.22395 0.95369 0.99643 0.94374 0.89605 1.22636 0.95942 1.02658 0.95030 1.22033 0.87554 0.97174 0.95697 1.47605 1.20835 1.62502 1.07161 1.15363 0.83595 0.79468 0.79202 1.90906 1.24602 1.48777 1.83096 1.44785 1.22728 1.63445 1.07126 1.20783 0.97673 1.00297 0.81265 1.19773 0.88930 0.86005 0.83752 1.90485 1.33357 1.47396 1.77256 1.41789 1.20003 1.50587 1.06086 1.19721 0.99252 1.35775 0.88616 0.87709 1.25328 0.98041 0.96581 0.97856 1.69621 1.27539 1.39275 1.17050 0.85810 0.80189 0.79066 0.78926 1.20298 1.20819 1.19353 1.21902 0.95778 0.97207 0.82912 0.92379 0.91577 0.92781 0.95078 0.90509 0.95845 0.91059 0.91348 0.90319 0.94187 0.90040 0.90416 0.91399 0.91312 0.75628 0.90028 0.90023 0.76998 0.91616 0.92046 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.84 37.16 0.37 -0.63 16 2 C 0.05 0.33 5.53 -3.82 -0.02 0.31 16 3 N -0.54 -4.11 4.62 -242.92 -1.12 -5.24 16 4 C 0.02 0.15 9.27 60.06 0.56 0.70 16 5 C 0.07 0.46 4.43 -3.83 -0.02 0.44 16 6 C -0.10 -0.80 3.05 -88.47 -0.27 -1.07 16 7 H 0.09 0.74 6.52 -51.93 -0.34 0.40 16 8 C -0.12 -0.92 6.41 -24.90 -0.16 -1.07 16 9 C 0.10 1.04 6.17 -2.90 -0.02 1.03 16 10 N -0.64 -8.93 3.33 -176.00 -0.59 -9.51 16 11 C 0.72 12.98 8.49 -86.91 -0.74 12.24 16 12 O -0.60 -12.62 16.60 5.29 0.09 -12.53 16 13 N -0.72 -13.17 5.49 -66.42 -0.36 -13.53 16 14 C 0.13 2.51 6.15 -5.20 -0.03 2.48 16 15 C 0.43 10.11 7.85 -10.99 -0.09 10.03 16 16 O -0.60 -15.57 15.24 5.54 0.08 -15.49 16 17 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 19 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.89 -24.14 13.05 55.50 0.72 -23.42 16 22 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C 0.15 1.69 6.29 -2.53 -0.02 1.68 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.33 6.60 -51.93 -0.34 -0.01 16 30 H 0.03 0.20 8.11 -51.93 -0.42 -0.22 16 31 H 0.08 0.56 6.37 -51.93 -0.33 0.23 16 32 H 0.02 0.13 8.12 -51.93 -0.42 -0.29 16 33 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 34 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 35 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 36 H 0.04 0.25 8.05 -51.93 -0.42 -0.17 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 7.22 6.42 -40.82 -0.26 6.96 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.40 9.64 7.90 -40.82 -0.32 9.31 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 0.71 7.94 -51.93 -0.41 0.29 16 47 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -32.47 379.98 -8.94 -41.40 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.73 Total: 12.65 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -0.68 Total: 18.19 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.41 Total: -65.63 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: 0.17 Total: -28.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.47 -8.94 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358310125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.026 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds