Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47368 * 2 1 4 4 C 1.46898 * 110.99718 * 293.95432 * 3 2 1 5 5 C 1.46897 * 111.00437 * 169.99804 * 3 2 1 6 6 C 1.52997 * 109.47104 * 287.88477 * 5 3 2 7 7 H 1.08994 * 110.89220 * 53.39452 * 6 5 3 8 8 C 1.55155 * 111.00450 * 177.27786 * 6 5 3 9 9 C 1.54320 * 103.10686 * 153.52283 * 8 6 5 10 10 N 1.47322 * 107.11488 * 338.02277 * 9 8 6 11 11 C 1.34784 * 125.61279 * 178.89309 * 10 9 8 12 12 O 1.21588 * 119.99596 * 179.77361 * 11 10 9 13 13 N 1.34776 * 119.99869 * 359.77339 * 11 10 9 14 14 C 1.46500 * 119.99719 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47083 * 180.02562 * 14 13 11 16 16 O 1.21298 * 120.00270 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00166 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99897 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99757 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99908 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47291 * 90.00620 * 22 20 18 24 24 H 1.48508 * 109.47168 * 210.00309 * 22 20 18 25 25 H 1.48503 * 109.47153 * 330.00290 * 22 20 18 26 26 C 1.47419 * 108.73871 * 358.69992 * 10 9 8 27 27 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47220 * 299.99857 * 1 2 3 29 29 H 1.09001 * 109.47017 * 60.00239 * 1 2 3 30 30 H 1.08998 * 109.47220 * 240.00143 * 2 1 3 31 31 H 1.09001 * 109.47017 * 119.99761 * 2 1 3 32 32 H 1.08996 * 109.47487 * 302.02314 * 4 3 2 33 33 H 1.09005 * 109.47456 * 62.02628 * 4 3 2 34 34 H 1.08997 * 109.47152 * 182.02151 * 4 3 2 35 35 H 1.09000 * 109.46918 * 167.87801 * 5 3 2 36 36 H 1.09005 * 109.46517 * 47.87921 * 5 3 2 37 37 H 1.09004 * 110.72173 * 271.97525 * 8 6 5 38 38 H 1.09006 * 110.72150 * 35.06753 * 8 6 5 39 39 H 1.09000 * 109.88680 * 97.30785 * 9 8 6 40 40 H 1.09000 * 109.88230 * 218.48175 * 9 8 6 41 41 H 0.96994 * 120.00084 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.46903 * 299.99710 * 14 13 11 43 43 H 1.08992 * 109.47627 * 59.99700 * 14 13 11 44 44 H 0.97000 * 119.99558 * 359.97438 * 17 15 14 45 45 H 0.97006 * 119.99791 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.36363 * 265.44718 * 26 10 9 47 47 H 1.09001 * 110.46461 * 143.17391 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4312 0.2382 6 6 3.7563 1.0847 1.7003 7 1 3.2925 0.1370 1.9738 8 6 5.2831 1.0563 1.9751 9 6 5.3739 1.3841 3.4803 10 7 4.1282 2.0789 3.8487 11 6 3.8083 2.5149 5.0833 12 8 2.7495 3.0821 5.2723 13 7 4.6619 2.3220 6.1083 14 6 4.3139 2.7954 7.4503 15 6 5.4288 2.4585 8.4066 16 8 6.4168 1.8795 8.0066 17 7 5.3278 2.7997 9.7066 18 6 6.3419 2.4927 10.5766 19 1 7.2215 1.9771 10.2204 20 6 6.2379 2.8449 11.9167 21 7 5.1674 3.4718 12.3502 22 14 7.6199 2.4273 13.1021 23 1 8.5946 3.5469 13.1402 24 1 7.0591 2.2128 14.4604 25 1 8.3045 1.1901 12.6481 26 6 3.2918 2.2226 2.6433 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0901 1.5169 -2.0955 33 1 0.5857 2.1112 -1.3527 34 1 2.0756 3.0786 -1.2417 35 1 3.8405 2.4327 0.0220 36 1 3.9665 0.7107 -0.4107 37 1 5.6935 0.0674 1.7703 38 1 5.7956 1.8150 1.3835 39 1 5.4678 0.4629 4.0554 40 1 6.2318 2.0298 3.6680 41 1 5.5067 1.8698 5.9574 42 1 4.1686 3.8755 7.4282 43 1 3.3942 2.3118 7.7791 44 1 4.5376 3.2624 10.0265 45 1 5.0947 3.7173 13.2858 46 1 3.4609 3.1937 2.1778 47 1 2.2380 2.1012 2.8939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358310125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = -85.395972 kcal Electronic energy + Delta-G solvation = -25812.451030 eV Core-core repulsion = 22029.153713 eV Total energy + Delta-G solvation = -3783.297317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44420 -40.23811 -39.35387 -37.83486 -36.24948 -35.31146 -33.49887 -33.27161 -31.49442 -30.21134 -29.35597 -27.49277 -26.38729 -25.21390 -23.92661 -22.15987 -21.40716 -21.10721 -20.81633 -20.10488 -19.25442 -17.65489 -17.48432 -17.00452 -16.66845 -16.57609 -16.35571 -16.08015 -15.91360 -15.71539 -15.21296 -15.12654 -14.49107 -14.24012 -14.15502 -14.07505 -13.82002 -13.55431 -13.51179 -13.27925 -13.10654 -12.90231 -12.78503 -12.64964 -12.45576 -12.21621 -12.12221 -11.99771 -11.92038 -11.74850 -11.57147 -11.41321 -11.32110 -10.56642 -10.32663 -10.09841 -9.52694 -9.20240 -8.50787 -6.01211 1.36632 1.42091 1.49831 1.57634 1.88627 2.07048 2.28282 2.86321 2.98283 3.16155 3.18117 3.64932 3.68705 3.85929 4.14261 4.19744 4.24869 4.30629 4.38634 4.40666 4.43786 4.49921 4.55492 4.65310 4.68563 4.70500 4.78363 4.83337 4.92886 4.94777 4.98822 5.09170 5.10542 5.16626 5.26816 5.30149 5.38526 5.38775 5.40095 5.91904 6.00809 6.18000 6.19102 6.47632 6.90238 7.03054 7.40606 7.49164 7.93598 8.66144 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.034372 B = 0.002102 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.409658 B =13315.472079 C =13685.265782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.561 5.561 4 C 0.025 3.975 5 C 0.072 3.928 6 C -0.085 4.085 7 H 0.082 0.918 8 C -0.111 4.111 9 C 0.090 3.910 10 N -0.639 5.639 11 C 0.717 3.283 12 O -0.633 6.633 13 N -0.723 5.723 14 C 0.141 3.859 15 C 0.435 3.565 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.999 3.001 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.142 3.858 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.064 0.936 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -5.816 -27.135 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.286 5.286 4 C -0.123 4.123 5 C -0.056 4.056 6 C -0.105 4.105 7 H 0.101 0.899 8 C -0.149 4.149 9 C -0.033 4.033 10 N -0.377 5.377 11 C 0.419 3.581 12 O -0.515 6.515 13 N -0.380 5.380 14 C 0.012 3.988 15 C 0.222 3.778 16 O -0.511 6.511 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.213 4.213 21 N -0.556 5.556 22 Si 0.822 3.178 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.194 1.194 26 C 0.020 3.980 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.577 -5.438 -26.585 27.519 hybrid contribution 0.689 -0.318 0.515 0.917 sum -3.888 -5.756 -26.069 26.979 Atomic orbital electron populations 1.21776 0.94847 1.01945 1.01967 1.22152 0.96263 0.88629 1.00890 1.61961 1.14246 1.16568 1.35817 1.22411 1.01951 0.98888 0.89074 1.22021 0.87507 1.02311 0.93788 1.22316 0.95877 0.97838 0.94460 0.89930 1.22641 0.95267 1.04540 0.92452 1.22316 0.85973 0.96800 0.98183 1.47717 1.22298 1.61375 1.06266 1.15510 0.82998 0.79443 0.80185 1.90871 1.26078 1.50583 1.83980 1.44698 1.22941 1.63659 1.06741 1.20594 0.96115 1.00926 0.81116 1.20346 0.89263 0.84566 0.83672 1.90460 1.34720 1.48237 1.77721 1.41835 1.19864 1.51117 1.06580 1.19746 0.99677 1.37372 0.89800 0.89480 1.26167 1.00361 0.95896 0.98865 1.69690 1.28796 1.39366 1.17751 0.84840 0.77295 0.78805 0.76858 1.19529 1.19660 1.19386 1.22046 0.94311 0.98983 0.82708 0.91539 0.93304 0.92272 0.94165 0.91049 0.95005 0.91164 0.91120 0.89760 0.92540 0.87677 0.88759 0.91412 0.91082 0.75335 0.89132 0.89163 0.76696 0.91058 0.91783 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.84 71.98 0.71 -1.14 16 2 C 0.05 0.61 5.53 86.30 0.48 1.08 16 3 N -0.56 -7.69 4.62 -922.46 -4.27 -11.96 16 4 C 0.02 0.27 9.27 127.69 1.18 1.45 16 5 C 0.07 0.81 4.43 86.30 0.38 1.19 16 6 C -0.09 -1.23 3.05 -9.40 -0.03 -1.26 16 7 H 0.08 1.29 6.52 -2.39 -0.02 1.27 16 8 C -0.11 -1.31 6.41 31.78 0.20 -1.10 16 9 C 0.09 1.76 6.17 86.67 0.53 2.29 16 10 N -0.64 -17.48 3.33 -828.99 -2.76 -20.24 16 11 C 0.72 25.91 8.49 179.05 1.52 27.43 16 12 O -0.63 -27.30 16.60 -3.99 -0.07 -27.37 16 13 N -0.72 -26.33 5.49 -482.30 -2.65 -28.97 16 14 C 0.14 5.54 6.15 85.63 0.53 6.06 16 15 C 0.43 20.68 7.85 87.66 0.69 21.36 16 16 O -0.62 -32.80 15.24 -3.09 -0.05 -32.84 16 17 N -0.56 -28.64 5.29 -306.98 -1.62 -30.26 16 18 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 19 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 20 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 21 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 22 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 C 0.14 3.24 6.29 86.86 0.55 3.79 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.67 6.60 -2.39 -0.02 0.65 16 30 H 0.04 0.43 8.11 -2.39 -0.02 0.41 16 31 H 0.07 0.96 6.37 -2.39 -0.02 0.94 16 32 H 0.03 0.29 8.12 -2.39 -0.02 0.27 16 33 H 0.07 0.76 6.57 -2.38 -0.02 0.75 16 34 H 0.07 0.72 7.95 -2.39 -0.02 0.70 16 35 H 0.08 0.88 7.74 -2.39 -0.02 0.86 16 36 H 0.06 0.49 8.05 -2.38 -0.02 0.47 16 37 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 0.86 8.04 -2.38 -0.02 0.84 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.41 14.50 6.42 -92.71 -0.60 13.91 16 42 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 45 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 46 H 0.06 1.43 7.94 -2.38 -0.02 1.41 16 47 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -69.96 379.98 -1.43 -71.39 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.35 Total: 42.07 kcal Atomic # 6 Polarization: 35.02 SS G_CDS: 8.02 Total: 43.04 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -11.02 Total: -140.34 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.11 Total: -60.21 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.96 -1.43 -71.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358310125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.005 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds