Wall clock time and date at job start Fri Apr 10 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48495 * 109.46874 * 239.99790 * 3 2 1 5 5 H 1.48499 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47111 * 119.99868 * 3 2 1 7 7 C 1.38945 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00012 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00158 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00117 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47426 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00211 * 179.97438 * 13 12 10 15 15 O 1.21586 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99940 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47237 * 179.72043 * 17 16 14 19 19 C 1.52996 * 109.46929 * 179.97438 * 18 17 16 20 20 N 1.46907 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.46845 * 110.99902 * 294.21019 * 20 19 18 22 22 C 1.53034 * 109.52134 * 174.15869 * 21 20 19 23 23 C 1.53114 * 109.27961 * 59.18255 * 22 21 20 24 24 C 1.53117 * 109.15939 * 302.34259 * 23 22 21 25 25 C 1.46847 * 110.99954 * 169.99824 * 20 19 18 26 26 H 0.97007 * 119.99673 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99877 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.47083 * 59.99535 * 12 10 9 29 29 H 1.09001 * 109.46875 * 299.99798 * 12 10 9 30 30 H 0.97004 * 119.99747 * 0.02562 * 13 12 10 31 31 H 0.97005 * 120.00161 * 359.72198 * 16 14 13 32 32 H 1.09001 * 109.46512 * 299.72412 * 17 16 14 33 33 H 1.08998 * 109.47174 * 59.71534 * 17 16 14 34 34 H 1.09000 * 109.46986 * 299.99958 * 18 17 16 35 35 H 1.09002 * 109.46857 * 60.00093 * 18 17 16 36 36 H 1.09000 * 109.47441 * 299.99910 * 19 18 17 37 37 H 1.08994 * 109.47235 * 60.00181 * 19 18 17 38 38 H 1.08995 * 109.46328 * 294.17581 * 21 20 19 39 39 H 1.08999 * 109.46052 * 54.14611 * 21 20 19 40 40 H 1.08993 * 109.50484 * 299.23732 * 22 21 20 41 41 H 1.09001 * 109.49882 * 179.12233 * 22 21 20 42 42 H 1.08998 * 109.52643 * 182.43658 * 23 22 21 43 43 H 1.09005 * 109.52651 * 62.24873 * 23 22 21 44 44 H 1.08996 * 109.50405 * 297.71348 * 24 23 22 45 45 H 1.09005 * 109.50670 * 177.59452 * 24 23 22 46 46 H 1.08995 * 109.46281 * 305.85431 * 25 20 19 47 47 H 1.09000 * 109.46112 * 65.82614 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0022 12 6 1.2435 -4.8630 0.0032 13 7 2.1955 -5.9766 0.0037 14 6 1.7462 -7.2472 0.0048 15 8 0.5508 -7.4693 0.0049 16 7 2.6219 -8.2716 0.0058 17 6 2.1335 -9.6529 0.0064 18 6 3.3235 -10.6146 0.0005 19 6 2.8134 -12.0570 0.0017 20 7 3.9559 -12.9804 -0.0034 21 6 4.7135 -12.8733 -1.2567 22 6 5.9729 -13.7382 -1.1685 23 6 5.5700 -15.1938 -0.9168 24 6 4.7413 -15.2707 0.3684 25 6 3.5175 -14.3614 0.2358 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 0.0016 28 1 0.6172 -4.9213 -0.8869 29 1 0.6166 -4.9201 0.8930 30 1 3.1492 -5.7993 0.0040 31 1 3.5757 -8.0944 0.0016 32 1 1.5317 -9.8249 0.8987 33 1 1.5242 -9.8232 -0.8811 34 1 3.9253 -10.4424 -0.8919 35 1 3.9327 -10.4442 0.8881 36 1 2.2118 -12.2289 0.8943 37 1 2.2039 -12.2276 -0.8856 38 1 4.0946 -13.2165 -2.0857 39 1 4.9975 -11.8340 -1.4217 40 1 6.5990 -13.3868 -0.3484 41 1 6.5270 -13.6707 -2.1048 42 1 6.4652 -15.8064 -0.8102 43 1 4.9763 -15.5577 -1.7554 44 1 5.3479 -14.9435 1.2127 45 1 4.4153 -16.2982 0.5303 46 1 2.9329 -14.4028 1.1547 47 1 2.9042 -14.6976 -0.6002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358311892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:39 Heat of formation + Delta-G solvation = -82.008309 kcal Electronic energy + Delta-G solvation = -24832.480706 eV Core-core repulsion = 21049.330289 eV Total energy + Delta-G solvation = -3783.150417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.86821 -39.41291 -38.19565 -35.97128 -34.38871 -33.99401 -33.60518 -31.42479 -31.32561 -30.80108 -27.66643 -25.84911 -24.43079 -23.65267 -23.12452 -21.41318 -20.58498 -20.10483 -19.56124 -18.32276 -17.89992 -16.78377 -16.12608 -15.87660 -15.55908 -15.41862 -15.05259 -14.86868 -14.61724 -14.43907 -14.30214 -13.96256 -13.93101 -13.75716 -13.44120 -13.39230 -12.78206 -12.50939 -12.15770 -12.03890 -11.86899 -11.74788 -11.61501 -11.59853 -11.28610 -11.09422 -11.06696 -10.78044 -10.63735 -10.49615 -10.30176 -10.01499 -9.61029 -9.13749 -8.72242 -8.60575 -8.56732 -8.08225 -6.49685 -3.91786 2.81503 3.14958 3.22595 3.26569 3.43477 3.48008 3.77273 4.10489 4.35531 4.37925 4.47010 4.50444 4.65657 4.76142 4.83861 4.90112 4.93105 5.01897 5.08196 5.17376 5.18973 5.22591 5.29782 5.34644 5.43398 5.50411 5.52427 5.56813 5.70663 5.76529 5.85716 5.87769 5.95321 5.98194 6.03359 6.10531 6.52021 6.69041 6.70483 6.78422 7.12771 7.47313 7.93976 8.26832 8.47142 8.82653 9.06235 9.41362 9.89416 10.67115 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.040623 B = 0.001644 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.097770 B =17032.705155 C =17554.450729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.749 5.749 17 C 0.142 3.858 18 C -0.129 4.129 19 C 0.059 3.941 20 N -0.538 5.538 21 C 0.051 3.949 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.117 4.117 25 C 0.055 3.945 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.407 0.593 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -28.216 -1.075 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.406 5.406 17 C 0.017 3.983 18 C -0.167 4.167 19 C -0.069 4.069 20 N -0.263 5.263 21 C -0.077 4.077 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.244 0.756 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.224 -28.086 -0.691 29.008 hybrid contribution 0.074 0.810 -0.695 1.070 sum 7.298 -27.276 -1.386 28.269 Atomic orbital electron populations 1.69613 1.05995 1.28595 1.49275 1.25321 0.95665 0.99904 0.96798 0.85867 0.78761 0.80169 0.79121 1.19815 1.20864 1.19798 1.19683 0.93435 0.82041 1.48384 0.87745 1.41779 1.09487 1.04433 1.62688 1.19774 0.88296 0.85026 0.85474 1.90489 1.13764 1.86880 1.57367 1.20775 0.91232 0.84855 1.03116 1.44773 1.11220 1.03347 1.78877 1.15853 0.85202 0.80583 0.77999 1.90902 1.14104 1.84319 1.58493 1.45017 1.09070 1.05160 1.81343 1.21050 0.95855 0.79134 1.02269 1.21798 0.97953 0.93366 1.03559 1.21972 0.91871 0.91632 1.01431 1.61897 1.23576 1.05876 1.34955 1.22169 0.94956 1.00708 0.89883 1.21588 0.97145 0.94760 1.02061 1.21587 0.99863 0.96826 0.97742 1.21587 0.96737 0.98692 0.98482 1.22084 0.96642 0.87889 1.00651 0.91557 0.77007 0.90054 0.90031 0.75606 0.76948 0.91636 0.91888 0.91190 0.90222 0.90256 0.94453 0.94983 0.90278 0.91005 0.91583 0.91835 0.92392 0.91014 0.91620 0.90665 0.94982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.43 9.93 7.85 -10.99 -0.09 9.84 16 11 O -0.60 -15.37 15.24 5.54 0.08 -15.29 16 12 C 0.13 2.44 6.15 -5.20 -0.03 2.40 16 13 N -0.72 -12.39 5.53 -66.42 -0.37 -12.76 16 14 C 0.70 11.66 8.57 -86.92 -0.74 10.91 16 15 O -0.60 -11.98 16.34 5.29 0.09 -11.89 16 16 N -0.75 -9.03 5.56 -65.22 -0.36 -9.39 16 17 C 0.14 1.44 5.67 -4.04 -0.02 1.42 16 18 C -0.13 -0.96 5.26 -26.73 -0.14 -1.10 16 19 C 0.06 0.42 4.96 -3.82 -0.02 0.41 16 20 N -0.54 -3.95 4.66 -234.68 -1.09 -5.04 16 21 C 0.05 0.35 5.29 -3.84 -0.02 0.32 16 22 C -0.12 -0.71 6.09 -26.65 -0.16 -0.87 16 23 C -0.12 -0.68 6.00 -26.61 -0.16 -0.84 16 24 C -0.12 -0.67 6.09 -26.65 -0.16 -0.83 16 25 C 0.06 0.36 5.46 -3.83 -0.02 0.34 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.41 6.71 7.45 -40.82 -0.30 6.41 16 31 H 0.40 3.84 8.49 -40.82 -0.35 3.49 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.55 7.99 -51.93 -0.41 0.13 16 37 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.08 0.53 6.21 -51.93 -0.32 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.46 8.01 -51.93 -0.42 0.04 16 47 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -32.00 381.04 -9.97 -41.97 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.89 Total: 14.01 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -1.81 Total: 14.09 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.16 Total: -64.20 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.17 Total: -27.18 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.00 -9.97 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358311892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.041 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds